BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0024.p (442 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004304767.1| polysaccharide biosynthesis protein [Polymor... 97 8e-18 ref|NP_770003.1| hypothetical protein bll3363 [Bradyrhizobium ja... 77 5e-12 ref|YP_004368672.1| polysaccharide biosynthesis protein [Marinit... 76 1e-11 ref|YP_001414260.1| polysaccharide biosynthesis protein [Parviba... 74 4e-11 ref|ZP_05079985.1| Polysaccharide biosynthesis protein [Rhodobac... 73 1e-10 >ref|YP_004304767.1| polysaccharide biosynthesis protein [Polymorphum gilvum SL003B-26A1] gb|ADZ71463.1| Polysaccharide biosynthesis protein [Polymorphum gilvum SL003B-26A1] Length = 449 Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 98/353 (27%), Positives = 158/353 (44%), Gaps = 22/353 (6%) Query: 2 MNIEEYGALMSLMTFALVASTVGLVGQQFRVLREIPSIAARKNYPEIGAIVAKRLRVACL 61 M+ E++G + A + + G GQ+ VLR P + ++ +V R+ L Sbjct: 54 MSAEDFGRFGFGFSLATLLAVAGSFGQRMLVLRFAPVYDHDGDRQKLAGVVRDGYRLVAL 113 Query: 62 G----SVAVTVIALL-PFVAAHGR---NGIFGSWQYATSVLLILPLSLIEMQSSLGRTLG 113 G +A V LL P +AA G G+F L L L E Q+ + R G Sbjct: 114 GCGLLGLATVVTGLLWPGLAARGYLVAAGVF-----------TLVLGLAEYQAHVLRAFG 162 Query: 114 SVNLALVSKDVLWRFLIILLGAVLFTTYGHPLPAQDVLLIATAILVVLIAAQNIYLRHLA 173 + L+L +D+LWR +ILL L A L + +L ++A Q L H Sbjct: 163 GMLLSLGPRDILWRAGVILLALGAALGLLPKLDAAGGLWLTAGVLAAVVAGQA--LAHPV 220 Query: 174 EGCKVFTMAVRRSNDRLGEVLSTSGPFWVTSVTSIMGGTVDLVVISVMVGPEAAGYYYAA 233 ++DR + G W +S + +VV+ +++ PEA G ++AA Sbjct: 221 TRPAALFAGPADTSDRPTWRHAMWG-LWASSFIRTAAPNLAVVVLGLVLTPEATGPFFAA 279 Query: 234 SRIALLLDFFLATFCIPAAPLIARLFDENRHAEITRITSGASLGAFVAVLGCVATLALGG 293 R+++LL+ FL + AAP+IAR + ++ R+ + S+G + L L G Sbjct: 280 LRLSMLLNLFLMAANMIAAPMIARTYHRGDRDDLQRLCAHVSVGLTLPTLAVFLVFVLAG 339 Query: 294 DLALMAFGETFTRAYSVLMVLAIGMLVSTYFGIGPIALNMTGHQRAAMHIVVI 346 D L FG + Y VL+VL++G LV+ G + MTG +R + IV + Sbjct: 340 DRLLELFGTGYAAYYWVLIVLSVGYLVNALSGSTSQLMEMTGDERYYLRIVTV 392 >ref|NP_770003.1| hypothetical protein bll3363 [Bradyrhizobium japonicum USDA 110] dbj|BAC48628.1| bll3363 [Bradyrhizobium japonicum USDA 110] Length = 541 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 106/390 (27%), Positives = 180/390 (46%), Gaps = 45/390 (11%) Query: 2 MNIEEYGALMSLMTFALVASTVGLVGQQFRVLREIPSIAARKNYPEIGAIVAKRLRVACL 61 M+ + +G + ++ A +A+ VGLVGQ+ ++R + ++ P++ V L Sbjct: 135 MSPDGFGIFATWLSVAQIAAVVGLVGQESLLVRFLNEYQV-EDRPDLTKGV-------LL 186 Query: 62 GSVAVTVIALLPFVAAHGRN-GIFGSWQYATSVLLILPLSL-------IEMQSSLGRTLG 113 S +T +A+L +AA + G W LLIL LS + + S + R+L Sbjct: 187 SSFKMTSVAMLIAIAAVALAASLRGDWW-----LLILALSAYTAVNAGLMLGSQIARSLV 241 Query: 114 SVNLALVSKDVLWRFLIILLGAVLFTTYGHPL--PAQDVLLIATAILVVLIAAQNIYLRH 171 S+ + ++++ WR +++L +L +GH PA+ ++ A+ V L+A R Sbjct: 242 SILMGEGNRELFWRVIVVLF--LLAMLFGHRQLDPAELFAVMTIAMSVGLVAQVVAIARA 299 Query: 172 LAEGCKVFTMAVRRSNDRLGEVLSTSGPFWVTSVTSIMGGTVDLVVISVMVGPEAAGYYY 231 L + + + A R R +++ FWV S+ D++++ M+ P AG Y+ Sbjct: 300 LPD---LRSTAARYETSRWR---ASALHFWVASILEAANQYFDVILVYWMLDPATAGIYF 353 Query: 232 AASRIALLLDFFLATFCIPAAPLIARLFDENRHAEITRITSGASLGAFVAVLGCVAT--- 288 AASR+A + A A + L+ H E R L A V L CVA+ Sbjct: 354 AASRLANIFAMLSAALYSFGARRLPSLYFSKNHQEFGRTLR---LMAEVTAL-CVASGLL 409 Query: 289 -LALGGDLALMAFGETFTRAYSVLMVLAIGMLVSTYFGIGPIALNMTGHQRAAMHIV--- 344 + +GG L FG F + VL+VLAIG G L +TGH+R + +V Sbjct: 410 LIWIGGPHLLNLFGPHFAAQHWVLIVLAIGTAFQAAGGPSAAILQLTGHERIYVPVVAAN 469 Query: 345 VITWVAGILAMIGATWTFGTIGAAVAGSCA 374 V + G L +I W G +GAA++ + + Sbjct: 470 VALRLVGFLVLI--PW-LGVLGAAISATVS 496 >ref|YP_004368672.1| polysaccharide biosynthesis protein [Marinithermus hydrothermalis DSM 14884] gb|AEB12562.1| polysaccharide biosynthesis protein [Marinithermus hydrothermalis DSM 14884] Length = 441 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 105/223 (47%), Gaps = 19/223 (8%) Query: 180 TMAVRRSNDRLGEVLSTSGPFWVTSVTSIMGGTVDLVVISVMVGPEAAGYYYAASRIALL 239 +M R R V S P + S + I+ D+++I + +GP+ AG Y AA++ A L Sbjct: 224 SMPPRYETARWWRV---SFPLLLVSGSLIVLNQADILMIGIFLGPKEAGIYMAATKTAAL 280 Query: 240 LDFFLATFCIPAAPLIARLFDENRHAEITRITSGASLGAFVAVLGCVATLALGGDLALMA 299 + F L AP+I+ L + E+ R+ S A F L L L G + L Sbjct: 281 VSFVLVAVNAIVAPMISELHTKGDREELQRMVSAAVRWMFWPSLSVTLGLLLLGRVVLGL 340 Query: 300 FGETFTRAYSVLMVLAIGMLVSTYFGIGPIA--LNMTGHQRAAMHIVVITWVAGILAMIG 357 FG F YS L++LA+G LV+ +GP+ +++TGHQ + WV G+ A++ Sbjct: 341 FGTEFPMGYSALVLLALGQLVNA--SVGPVGYLMSLTGHQDLS------AWVYGLSALVN 392 Query: 358 ATWT------FGTIGAAVAGSCAGIATRVWTAAYIYSAEGIDI 394 +G IGAA+A A + W +Y G+D+ Sbjct: 393 IGLNALLIPIWGLIGAALATMAAMVLWNAWLYVLVYRFLGLDV 435 >ref|YP_001414260.1| polysaccharide biosynthesis protein [Parvibaculum lavamentivorans DS-1] gb|ABS64603.1| polysaccharide biosynthesis protein [Parvibaculum lavamentivorans DS-1] Length = 459 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 153/369 (41%), Gaps = 13/369 (3%) Query: 2 MNIEEYGALMSLMTFALVASTVGLVGQQFRVLREIPSIAARKNYPEI-GAIVAKRLRVAC 60 M EYG + + ++ V +G VLR +P ++ + + G + A V Sbjct: 58 MGAFEYGIFAYVWVWVVILGIVVPMGFGTSVLRFVPEYRTKERWRRLAGVLRASTFVVLA 117 Query: 61 LGSV-AVTVIALLPFVAAHGRNGIFGSWQYATSVLLILPLSLIEMQSSLGRTLGSVNLAL 119 LG V A+ +ALL V H + F ++L + +L + Q R G VNLA Sbjct: 118 LGLVTALLGVALLWAVRDHVESYYF--LPLVVALLCVPAFALTDWQEGAARAFGWVNLAY 175 Query: 120 VSKDVLWRFLIILL--GAVLFTTYGHPLPAQDVLLIATAILVVLIAAQNIYLRHLAEGCK 177 + ++ I+L+ G VLFT G Q L A L+ L+A + R +A Sbjct: 176 IPSYIIRPLGIVLIAGGIVLFT--GQATGLQVTLGALGATLLTLVAQRLFLSRRVAR--- 230 Query: 178 VFTMAVRRSNDRLGEVLSTSGPFWVTSVTSIMGGTVDLVVISVMVGPEAAGYYYAASRIA 237 T+ R L ++ S P + ++ D+V++ V P+ Y+AA+RIA Sbjct: 231 --TVPPARPVYHLRHWVAISAPLVLVEGLFLILVNTDIVLLGYFVEPDQIAVYFAATRIA 288 Query: 238 LLLDFFLATFCIPAAPLIARLFDENRHAEITRITSGASLGAFVAVLGCVATLALGGDLAL 297 L+ F + A P A L + E+ G F L L L G AL Sbjct: 289 NLMAFICFSLSALAVPKFAELHGAGKREELQTFMQGVIQWIFWPTLAAGVFLLLIGPFAL 348 Query: 298 MAFGETFTRAYSVLMVLAIGMLVSTYFGIGPIALNMTGHQRAAMHIVVITWVAGILAMIG 357 FGE F Y +L +L +G L G LNMTGHQ A + V I+ I Sbjct: 349 GLFGEGFEAGYPLLWLLTLGFLARASTGPTEYLLNMTGHQNAVAWVYGAAAVGNIVLNIA 408 Query: 358 ATWTFGTIG 366 +FG +G Sbjct: 409 LVPSFGLMG 417 >ref|ZP_05079985.1| Polysaccharide biosynthesis protein [Rhodobacterales bacterium Y4I] gb|EDZ47964.1| Polysaccharide biosynthesis protein [Rhodobacterales bacterium Y4I] Length = 454 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 116/262 (44%), Gaps = 11/262 (4%) Query: 110 RTLGSVNLALVSKDVLWRF--LIILLGAVLFTTYGHPLPAQDVLLIATAILVVLIAAQNI 167 R ++ +L+ +D+ WR L + LG F+ A +L + L++L A + Sbjct: 165 RGYRTIAFSLLPRDIFWRLAVLAVCLGLWAFSLSLSAAAAVWLLGLPLFALILLQAGSDP 224 Query: 168 YLRHLAEGCKVFTMAVRRSNDRLGEVLSTSGPFWVTSVTSIMGGTV-DLVVISVMVGPEA 226 +LR ++F A R + T P W TS+ +GG V V++ V++ P+ Sbjct: 225 HLRRPIALRELFAAAAAR--------VRTGLPLWGTSLIQTVGGPVLAPVILGVVLSPDE 276 Query: 227 AGYYYAASRIALLLDFFLATFCIPAAPLIARLFDENRHAEITRITSGASLGAFVAVLGCV 286 G ++AA RIAL+LD F + APL+AR AE + + L +A L Sbjct: 277 VGPFFAAFRIALVLDLFTLASAMVVAPLVARGHANGNFAETQAMLRYSVLLVSMATLVSF 336 Query: 287 ATLALGGDLALMAFGETFTRAYSVLMVLAIGMLVSTYFGIGPIALNMTGHQRAAMHIVVI 346 + GD L F A L VL G L+S G P L + G ++ + +V Sbjct: 337 LIIVFYGDWLLALMNPDFATAAPALTVLGAGFLISVCCGPVPNILELAGQEKTLLRRLVW 396 Query: 347 TWVAGILAMIGATWTFGTIGAA 368 + A++ AT FG GAA Sbjct: 397 FNFICLAALVPATEHFGMTGAA 418