BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0023.p (279 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004303798.1| methyltransferase FkbM [Polymorphum gilvum S... 187 2e-45 ref|YP_001206159.1| hypothetical protein BRADO4182 [Bradyrhizobi... 150 2e-34 ref|YP_577469.1| methyltransferase FkbM [Nitrobacter hamburgensi... 149 4e-34 ref|YP_781442.1| FkbM family methyltransferase [Rhodopseudomonas... 148 7e-34 ref|ZP_01048548.1| possible methyltransferase, FkbM family prote... 147 1e-33 >ref|YP_004303798.1| methyltransferase FkbM [Polymorphum gilvum SL003B-26A1] gb|ADZ70496.1| Methyltransferase FkbM [Polymorphum gilvum SL003B-26A1] Length = 326 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 109/264 (41%), Positives = 153/264 (57%), Gaps = 8/264 (3%) Query: 3 LAMRAVKPLLHSQ-LSCVHFADGSRLYFELNDVYWNAFFIGQPGMTYEPDIATLLLRLKD 61 +A + V+ +L S+ + V FAD +R F D YW+ P YE ++ +L ++D Sbjct: 45 IASKLVRSVLPSRRMVTVDFADDARFSFPYGDGYWSLLL--DPRDVYEEEVEAILRAIRD 102 Query: 62 IDYTFFDCGANIGYWSVLVTSEMLGRKRAIAVEASRETLAILEQNRDANDHRFEICRRAL 121 +DY F DCGAN GYWSVLVTS GR +A+A+E E+ AILE+N AN +RF RA+ Sbjct: 103 VDYAFVDCGANFGYWSVLVTSAGFGRHKAVAIELDPESFAILERNAAANGNRFTCLHRAI 162 Query: 122 FEYDGRSLFFSDDGPHSARHIVTSQSSRPSHTEPVMSITIDALARDQQLTDSDRLVVKLD 181 + D L F H AR +V + V+SIT+D L D + D +V+KLD Sbjct: 163 SDSDDDVLKFY-GAKHEARSVVPDATG--GVRGEVLSITLDRLVEDGHVPDEGPVVLKLD 219 Query: 182 VEGQEVAALKGARQVLKRDTLIIYEDHGQDRNHATTRYVFEALGLPVFALAADGSVTKVE 241 VEG EV ALKG +L RD LI+YE+HG DR H+ +RY+ + G+ +F D + ++ Sbjct: 220 VEGVEVQALKGGTALLMRDVLIVYEEHGSDRAHSVSRYLRDDCGMRLFG-HVDKTFFELG 278 Query: 242 DLATLDRLKVNPKIGYN-FATCPP 264 + L RLK NP+ GY+ FAT P Sbjct: 279 SVDQLTRLKTNPRRGYDFFATRSP 302 >ref|YP_001206159.1| hypothetical protein BRADO4182 [Bradyrhizobium sp. ORS 278] emb|CAL77934.1| Conserved Hypothetical protein; putative methyltransferase, FkbM family [Bradyrhizobium sp. ORS 278] Length = 319 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 126/236 (53%), Gaps = 10/236 (4%) Query: 29 FELNDVYWNAFFIGQPGMTYEPDIATLLLRLKDIDYTFFDCGANIGYWSVLVTSEMLGRK 88 F D YW+ YE ++ L L D+DYTF D GAN GYWSVLV+S G Sbjct: 72 FPYGDGYWSKLL--NRAYHYEDELELLFLGTVDVDYTFIDGGANYGYWSVLVSSAPYGAH 129 Query: 89 RAIAVEASRETLAILEQNRDANDHRFEICRRALFEYDGRSLFFSDDGPHSARHIVTSQSS 148 +AIA+E S A L N D N RFE+ + A+ E G + +H S + Sbjct: 130 KAIAIEPSSANFAKLANNADINGGRFEVMKCAIGERRGVAHL------TGTKHEAFSIAG 183 Query: 149 RPSHTEPVMSITIDALARDQQLTDSDRLVVKLDVEGQEVAALKGARQVLKRDTLIIYEDH 208 + E V + +D L D ++ S + ++KLDVEG E+ A+KG ++L D++I+ E+H Sbjct: 184 DGAGGEQVPVMALDDLIDDGKVAASGKYLIKLDVEGVEIEAIKGGARLLATDSMILCEEH 243 Query: 209 GQDRNHATTRYVFEALGLPVFAL-AADGSVTKVEDLATLDRLKVNPKIGYN-FATC 262 GQDRNH +RY+ + + + A G V +L+ LDR+KV+ +GYN F T Sbjct: 244 GQDRNHTVSRYILDQTPMQLMVYDPASGRFETVTELSILDRIKVSAHVGYNVFGTA 299 >ref|YP_577469.1| methyltransferase FkbM [Nitrobacter hamburgensis X14] gb|ABE63009.1| Methyltransferase FkbM [Nitrobacter hamburgensis X14] Length = 321 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 125/233 (53%), Gaps = 12/233 (5%) Query: 29 FELNDVYWNAFFIGQPGMTYEPDIATLLLRLKDIDYTFFDCGANIGYWSVLVTSEMLGRK 88 F D YW+ YE ++ L D+DYT DCGAN GYWSVLV+S G + Sbjct: 73 FPYGDGYWSKLL--NRSFKYEEELELLFRGSADVDYTLLDCGANYGYWSVLVSSRPFGSR 130 Query: 89 RAIAVEASRETLAILEQNRDANDHRFEICRRALFEYDGRSLFFSDDGPHSARHIVTSQSS 148 RAIA+E S + A L N D N +RFE+ + A+ G + H A I + Sbjct: 131 RAIAIEPSSKNFAKLLNNADINGNRFEVVQSAIGATRGTARL--SGTKHEAFSIAGGAN- 187 Query: 149 RPSHTEPVMSITIDALARDQQLTDSDRLVVKLDVEGQEVAALKGARQVLKRDTLIIYEDH 208 + E V +T+D L D +++ + ++KLDVEG E+ A+KG +VL+ D +I+ EDH Sbjct: 188 --ADGENVPVLTLDNLLDDGRISPDGKYLIKLDVEGVEIEAIKGGTRVLQGDAVILCEDH 245 Query: 209 GQDRNHATTRYVFEALGLPVFALAADGSVTKVE---DLATLDRLKVNPKIGYN 258 G DRNH +RY+ E P+ + D + E +L+ LDR+KV +GYN Sbjct: 246 GNDRNHTVSRYILEQ--TPLELIVHDPVSNRFETLTELSILDRIKVASHVGYN 296 >ref|YP_781442.1| FkbM family methyltransferase [Rhodopseudomonas palustris BisA53] gb|ABJ06462.1| methyltransferase FkbM family [Rhodopseudomonas palustris BisA53] Length = 321 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 124/236 (52%), Gaps = 9/236 (3%) Query: 29 FELNDVYWNAFFIGQPGMTYEPDIATLLLRLKDIDYTFFDCGANIGYWSVLVTSEMLGRK 88 F D YW+ P YE +I L+ ++DY D GAN GYWS+L +S G Sbjct: 73 FPYGDGYWSKLL--DPSFRYEQEIELLMRGCAEVDYLLIDGGANYGYWSILASSAPFGSH 130 Query: 89 RAIAVEASRETLAILEQNRDANDHRFEICRRALFEYDGRSLFFSDDGPHSARHIVTSQSS 148 R IA+E S L L+ N N RF I +RAL G ++ H A IV S + Sbjct: 131 RVIAIEPSSRNLVQLKNNAHINGDRFTILKRALGAARGTAIL--SGSKHEALSIVASAA- 187 Query: 149 RPSHTEPVMSITIDALARDQQLTDSDRLVVKLDVEGQEVAALKGARQVLKRDTLIIYEDH 208 + E V I +D+L + + + ++KLDVEG E+ A+KG++++L+ D +I+ E+H Sbjct: 188 --TGGEGVEVIPLDSLLDEGMVEPGGKYLIKLDVEGVEIEAIKGSKKLLEGDAMILCEEH 245 Query: 209 GQDRNHATTRYVFEALGLPVFAL-AADGSVTKVEDLATLDRLKVNPKIGYN-FATC 262 G DRNH +R++ L +F A G V+ LA LDR+KV +GYN F T Sbjct: 246 GHDRNHTVSRFILTHTPLKLFVYDPASGRYEAVDSLAILDRIKVATNVGYNVFGTA 301 >ref|ZP_01048548.1| possible methyltransferase, FkbM family protein [Nitrobacter sp. Nb-311A] gb|EAQ33489.1| possible methyltransferase, FkbM family protein [Nitrobacter sp. Nb-311A] Length = 316 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/266 (34%), Positives = 133/266 (50%), Gaps = 11/266 (4%) Query: 1 MGLAMRAVKPLLHSQLSCVHFADGSRLYFELNDVYWNAFFIGQPGMTYEPDIATLLLRLK 60 GL+ RA++P++ ++ V + F D YW+ YE DI L R+ Sbjct: 49 FGLSCRALRPIVPNRDILVRLNQDAVFAFPFGDEYWSTIL--DRKYVYERDIDLFLRRIS 106 Query: 61 DIDYTFFDCGANIGYWSVLVTSEMLGRKRAIAVEASRETLAILEQNRDANDHRFEICRRA 120 D DY DCGAN GYWS LV+S G RAIA+E S A+L +N N +RFE R A Sbjct: 107 DTDYVLLDCGANYGYWSTLVSSGPYGSHRAIAIEPSSSNYAVLRRNAVINGNRFETIRSA 166 Query: 121 LFEYDGRSLFFSDDGPHSARHIVTSQSSRPSHTEPVMSITIDALARDQQLTDSDRLVVKL 180 + E G + +H + + E V +++D L D + RLV+KL Sbjct: 167 IGETSGTAYL------SGRKHESMTIADHDEGGEAVNLVSLDDLM-DHIALSAKRLVLKL 219 Query: 181 DVEGQEVAALKGARQVLKRDTLIIYEDHGQDRNHATTRYVFEALGLPVFALAAD-GSVTK 239 DVEG E+ A+ G ++LK D ++I EDHG D H ++++ + +F D G + Sbjct: 220 DVEGVEIGAMVGGGRLLKTDCIVICEDHGNDPLHTVSKHILNHTEMRLFCYDPDAGHYIR 279 Query: 240 VEDLATLDRLKVNPKIGYN-FATCPP 264 ++D+ LDR+K GYN AT P Sbjct: 280 LKDVLPLDRIKKAVNRGYNVLATASP 305