BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0022.p (316 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772945.1| hypothetical protein bll6305 [Bradyrhizobium ja... 363 2e-98 ref|ZP_07658367.1| polysaccharide deacetylase [Roseibium sp. Tri... 228 1e-57 ref|YP_001922970.1| polysaccharide deacetylase [Methylobacterium... 223 3e-56 ref|YP_004305638.1| polysaccharide deacetylase [Polymorphum gilv... 211 1e-52 ref|YP_001771738.1| polysaccharide deacetylase [Methylobacterium... 193 3e-47 >ref|NP_772945.1| hypothetical protein bll6305 [Bradyrhizobium japonicum USDA 110] dbj|BAC51570.1| bll6305 [Bradyrhizobium japonicum USDA 110] Length = 371 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 174/306 (56%), Positives = 219/306 (71%), Gaps = 3/306 (0%) Query: 1 LRRAFAGRAAILMFHEIQQDWRSELKTGAPPDFLEYCLKWLRQQGWEIVSLDACLERLAA 60 R A RAAI++FHEIQ+D R+EL TG P EY L WLRQ+GW IVS+D C+ERLA Sbjct: 55 FRAHLAARAAIILFHEIQRDARAELMTGTPVALFEYSLNWLRQEGWVIVSVDECIERLAR 114 Query: 61 DPEPRRYAVLTFDDGYKDNVTTALPILERNSAPFTVYVPTGAVKRTMQPWWLGLRDLFRS 120 + RYAVLTFDDGY+DN + LPILER++APF +YVPTGA R+MQ WWLGLR +F S Sbjct: 115 NDRSERYAVLTFDDGYRDNASVGLPILERHNAPFMMYVPTGAPTRSMQSWWLGLRRVFLS 174 Query: 121 RDSLAIDAMNLRFSCRDFDEKASALEKVSNWVHEDYQRVGMLAPTFSKADLSLEALNDTY 180 RD ++IDA+ +F C D K SAL +V+ WVH+DY+R ML+ F ++ +SL LND Y Sbjct: 175 RDRVSIDALGRQFQCSDLRSKTSALAEVTRWVHQDYRRGAMLSSVFEESGISLAELNDEY 234 Query: 181 FINERELQVLARHPLASIGGHTESHPALAYLNAASARAEMVDNRAYLEGLLQRPVRHVAF 240 F++EREL LARHPLASIGGH+ SH AL+ L++ SARAE+ DNR+YLE +LQ PVRHVA+ Sbjct: 235 FLDERELCTLARHPLASIGGHSTSHQALSTLDSDSARAELADNRSYLENMLQLPVRHVAY 294 Query: 241 PYGNSRACGSREQHLAAEVGFSTAVTTRHGHISDRKPHLFGLPRIAVGGPSDGRIPFEGR 300 PYG CG RE+ LA + GF TA TTR G + D K + F LPRI + PS R G Sbjct: 295 PYG---VCGPREEDLARQAGFQTATTTRQGRLYDDKLNRFALPRIGISSPSGLRARMSGI 351 Query: 301 MNGVQS 306 + G+Q+ Sbjct: 352 IEGMQA 357 >ref|ZP_07658367.1| polysaccharide deacetylase [Roseibium sp. TrichSKD4] gb|EFO33034.1| polysaccharide deacetylase [Roseibium sp. TrichSKD4] Length = 371 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 123/311 (39%), Positives = 177/311 (56%), Gaps = 6/311 (1%) Query: 1 LRRAFAGRAAILMFHEIQQDWRSELKTGAPPDFLEYCLKWLRQQGWEIVSLDACLERLAA 60 L F G LMFHEIQ D SEL TG PP+ L L+ ++ G ++V+++ L +L Sbjct: 52 LSSRFRGPGIALMFHEIQTDVESELLTGCPPEQLREILRAIKSDGRDVVTIEEGLAQLGQ 111 Query: 61 DPEPRRYAVLTFDDGYKDNVTTALPILERNSAPFTVYVPTGAVKRTMQPWWLGLRDLFRS 120 P+ +A+LT DD Y+DN+ ALPILE +AP T++VPTG + R + WWL LR + + Sbjct: 112 Q-NPKPFALLTLDDAYRDNLEIALPILEEFAAPTTLFVPTGMINRQLDVWWLELRAVLKH 170 Query: 121 RDSLAIDAMNLRFSCRDFDEKASALEKVSNWVHEDYQRVGMLAPTFSKADLSLEALNDTY 180 ++ A M+ F C D KA+AL KV+ WV D RV L + ++ +L D+Y Sbjct: 171 HETFAFPPMDRVFVCADTASKAAALRKVTAWVGTDQGRVNELTAALAPYGMNKASLIDSY 230 Query: 181 FINERELQVLARHPLASIGGHTESHPALAYLNAASARAEMVDNRAYLEGLLQRPVRHVAF 240 +++ L+ A HPL +IG HT +H ++ L+ E DN+ +LE L+ + V +A+ Sbjct: 231 AMDDATLKQFAAHPLVTIGAHTTTHRFMSQLSDDEVMREFKDNKEFLENLIGQRVEFLAY 290 Query: 241 PYGNSRACGSREQHLAAEVGFSTAVTTRHGHISD---RKPHLFGLPRIAVGGPSDGRIPF 297 PYG ACG RE +LA E GF A TTR GH+ + PHL LPRI VG + Sbjct: 291 PYGTEGACGEREANLAKEAGFKAAFTTRPGHVFAEHLKLPHL--LPRIDVGYFPQRKAAL 348 Query: 298 EGRMNGVQSAV 308 R++G Q A+ Sbjct: 349 ASRLSGFQRAM 359 >ref|YP_001922970.1| polysaccharide deacetylase [Methylobacterium populi BJ001] gb|ACB78435.1| polysaccharide deacetylase [Methylobacterium populi BJ001] Length = 349 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 123/287 (42%), Positives = 164/287 (57%), Gaps = 5/287 (1%) Query: 1 LRRAFAGRAAILMFHEIQQDWRSELKTG--APPDFLEYCLKWLRQQGWEIVSLDACLERL 58 L R + G I M H + ++ G P L+ L LR++G +VSLD + RL Sbjct: 22 LSRRYGGAGTIFMLHSVVENGAFYPDRGLRCPTAQLDAILTMLRRRGIALVSLDEAVSRL 81 Query: 59 AADPEPRRYAVLTFDDGYKDNVTTALPILERNSAPFTVYVPTGAVKRTMQPWWLGLRDLF 118 DP P R+A TFDDG+ DN++ ALP++ER+ APFTVYV TG + + WWLGL L Sbjct: 82 R-DPRPGRFASFTFDDGFDDNLSRALPVMERHGAPFTVYVATGMITGDLDAWWLGLAALI 140 Query: 119 RSRDSLAIDAMNLRFSCRDFDEKASALEKVSNWVHEDYQRVGMLAPTFSKADLSLEALND 178 RSRD +A+ F+C D K +A + + +H Y+ + + + A L L L Sbjct: 141 RSRDVIALPD-GTAFACNDAPSKVAAFDAIERAIHRRYELLPAIRDMIAAAGLDLPGLVR 199 Query: 179 TYFINERELQVLARHPLASIGGHTESHPALAYLNAASARAEMVDNRAYLEGLLQRPVRHV 238 + L+ LA HPLA+IG H +H LA AR EM NRA+LE + RPVRH Sbjct: 200 AEGLTLERLRRLAEHPLATIGAHGTTHINLARAPEDVAREEMAANRAFLEAAIGRPVRHF 259 Query: 239 AFPYGNSRACGSREQHLAAEVGFSTAVTTRHGHI-SDRKPHLFGLPR 284 A+P+GN+RACG RE+ LA VGF TAVTTRHG + D HL+ LPR Sbjct: 260 AYPFGNARACGPREERLAEAVGFETAVTTRHGAVFPDHLHHLYALPR 306 >ref|YP_004305638.1| polysaccharide deacetylase [Polymorphum gilvum SL003B-26A1] gb|ADZ72332.1| Polysaccharide deacetylase [Polymorphum gilvum SL003B-26A1] Length = 347 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/317 (37%), Positives = 171/317 (53%), Gaps = 9/317 (2%) Query: 3 RAFAGRAAILMFHEIQQDWRSELKTGAPPDFLEYCLKWLRQQGWEIVSLDACLERLAADP 62 R + GR ILMFHE S L G D E L +R G +IV L+RLA DP Sbjct: 27 RIYGGRGVILMFHEFTHCPHSMLDQGCRIDDFEAVLAAVRADGRDIVGFGEALQRLA-DP 85 Query: 63 EPRRYAVLTFDDGYKDNVTTALPILERNSAPFTVYVPTGAVKRTMQPWWLGLRDLFRSRD 122 + + VLTFDDGY+ N+ ALP++ER AP ++VPTG V RT+ WWLGLRD+ S + Sbjct: 86 DSPPFVVLTFDDGYRSNLELALPVMERYEAPAIIFVPTGMVTRTVNAWWLGLRDMIVSNE 145 Query: 123 SLAIDAMNLRFSCRDFDEKASALEKVSNWVHEDYQRVGMLAPTFSKADLSLEALNDTYFI 182 ++ ++ + +R C D D K +AL +++ WV +D++RV +L F+ + + L + + Sbjct: 146 AIDVEPLGMRLDCADLDAKIAALRRLTAWVWDDFRRVDLLDDAFAAHGVRMPDLVERLAM 205 Query: 183 NERELQVLARHPLASIGGHTESHPALAYLNAASARAEMVDNRAYLEGLLQRPVRHVAFPY 242 +ERE+ RHPL IG HT +H AL L+A ++ DN+ +LE LQR V + A+PY Sbjct: 206 SEREMIQADRHPLIEIGAHTTTHRALGLLSADEVATDIGDNKRFLEERLQREVPYFAYPY 265 Query: 243 GNSRACGSREQHLAAEVGFSTAVTTRHGHI---SDRKPHLFGLPRIAVGGPSDGRIPFEG 299 G G RE + +GF A+TT G + P+L +PR DG Sbjct: 266 GPPSITGRREADIVKALGFRAAMTTEPGCLFPEHGEDPYL--IPRQDAEYTEDG---LAQ 320 Query: 300 RMNGVQSAVQMLFGRGN 316 M G+ + L RG Sbjct: 321 AMCGLHGVFRALASRGG 337 >ref|YP_001771738.1| polysaccharide deacetylase [Methylobacterium sp. 4-46] gb|ACA19304.1| polysaccharide deacetylase [Methylobacterium sp. 4-46] Length = 368 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 116/290 (40%), Positives = 161/290 (55%), Gaps = 9/290 (3%) Query: 3 RAFAGRAAILMFHEIQQDWRSELKTG--APPDFLEYCLKWLRQQGWEIVSLDACLERLAA 60 R FAGR A+ MFH + D L G A P F++ L LR++ +I+ ++ +RL + Sbjct: 30 RNFAGRGAVYMFHSVVPDRARFLTPGLRASPRFVDRFLADLRRRDIDIIRIEDLEDRLRS 89 Query: 61 DPEPRRYAVLTFDDGYKDNVTTALPILERNSAPFTVYVPTGAVKRTMQPWWLGLRDLFRS 120 P RR+ V TFDDGY DN+ ALP+ E++ AP T+YV T + + WWL L L Sbjct: 90 -PNSRRFIVFTFDDGYVDNLQYALPVFEKHRAPMTIYVTTSMITGELYCWWLALERLILE 148 Query: 121 RDSLAIDAMNLRFSCRDFDEKASALEKVSNWVHEDYQ-RVGMLAPTFSKADLSLEALNDT 179 + I M RF C +K A ++S WV +D R +L P F + +S + + Sbjct: 149 TSRVDIAPMGRRFVCATMGDKLRAYREISTWVSDDITGRAPLLQPLFLVSGVSTRQIVEN 208 Query: 180 YFINERELQVLARHPLASIGGHTESHPALAYLNAASARAEMVDNRAYLEGLLQRPVRHVA 239 ++ +L+ L R+ L +IGGHT+ H L+ L + ARAE+V N+ YLE LQ V H A Sbjct: 209 VGLSVEQLKYLGRNDLVTIGGHTDRHAELSRLGESEARAEIVANKRYLEDTLQNEVSHFA 268 Query: 240 FPYGNSRACGSREQHLAAEVGFSTAVTTRHGHISDR---KPHLFGLPRIA 286 FP+G ACG RE L E G+ TAVTT HG + DR + HL LPRI Sbjct: 269 FPFGGRTACGEREARLVREAGYRTAVTTEHGCVFDRHLGRLHL--LPRIG 316