BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0009.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772958.1| hypothetical protein blr6318 [Bradyrhizobium ja... 273 1e-71 ref|YP_571382.1| hypothetical protein RPD_4264 [Rhodopseudomonas... 152 2e-35 ref|YP_002288187.1| hypothetical protein OCAR_5189 [Oligotropha ... 152 4e-35 ref|YP_001242708.1| YchN-like domain-containing protein [Bradyrh... 149 2e-34 ref|YP_487978.1| hypothetical protein RPB_4380 [Rhodopseudomonas... 149 2e-34 >ref|NP_772958.1| hypothetical protein blr6318 [Bradyrhizobium japonicum USDA 110] dbj|BAC51583.1| blr6318 [Bradyrhizobium japonicum USDA 110] Length = 201 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 145/208 (69%), Positives = 164/208 (78%), Gaps = 17/208 (8%) Query: 4 FQQIAKVTIIGAATVLLSASYAAAEQGGGRYWTPTTTNPTADYRHVSEKV--QRVHVSRK 61 FQ IAK ++ A VL+SAS++AAEQGG +YWTP AD + V K R HV++ Sbjct: 4 FQHIAKSVVMAAIAVLVSASFSAAEQGG-KYWTP------ADGQPVPHKAGHARQHVAKP 56 Query: 62 AT-THKRERSPLNANARLPSNT----KSHNLILQVNTNDPAAMNLALNNAVNVAQYYKDL 116 T T R++S A AR+ + + H+LILQVNTNDPAAMNLALNNA NVAQYYKD Sbjct: 57 TTATATRKQS---AFARMEDSAAAKKREHHLILQVNTNDPAAMNLALNNATNVAQYYKDA 113 Query: 117 GEKVKIEVVTFGPGLHMLRDDTSPVKARLEEMALSTPEVSFKACGNTQEKMHKAENKDIP 176 GEKVKIEVVTFGPGLHMLR+DTSPVK R+EEMALSTPEVSFKACGNTQEKM KAE+KDIP Sbjct: 114 GEKVKIEVVTFGPGLHMLREDTSPVKTRIEEMALSTPEVSFKACGNTQEKMQKAESKDIP 173 Query: 177 IVRQAEVVKSGVVRVMELQEKGWSYVKP 204 IVRQAEVVKSGVVRVMELQE GW+YVKP Sbjct: 174 IVRQAEVVKSGVVRVMELQEMGWTYVKP 201 >ref|YP_571382.1| hypothetical protein RPD_4264 [Rhodopseudomonas palustris BisB5] gb|ABE41481.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 150 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 69/127 (54%), Positives = 94/127 (74%), Gaps = 2/127 (1%) Query: 80 SNTKSHNLILQVNTNDPAAMNLALNNAVNVAQYYKDLGEKVKIEVVTFGPGLHMLRDDTS 139 ++ KSH + +QVN NDPA MNLALNNA N+ + YK GE V++E+VTFGPGLHMLRDD+S Sbjct: 24 ADAKSHRVAIQVNQNDPAVMNLALNNATNIIEAYKAKGEDVQVEIVTFGPGLHMLRDDSS 83 Query: 140 PVKARLEEMALST--PEVSFKACGNTQEKMHKAENKDIPIVRQAEVVKSGVVRVMELQEK 197 PVK R++++A ++ + F AC NT++ M E + ++ QA +V SG VR+MELQE Sbjct: 84 PVKDRIKQIADASFPSSIKFTACDNTKQGMETREGRAFSVIPQATLVPSGAVRLMELQED 143 Query: 198 GWSYVKP 204 GWSY+KP Sbjct: 144 GWSYLKP 150 >ref|YP_002288187.1| hypothetical protein OCAR_5189 [Oligotropha carboxidovorans OM5] ref|YP_004633713.1| hypothetical protein OCA5_c27790 [Oligotropha carboxidovorans OM5] gb|ACI92322.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] gb|AEI03895.1| hypothetical protein OCA4_c27780 [Oligotropha carboxidovorans OM4] gb|AEI07472.1| hypothetical protein OCA5_c27790 [Oligotropha carboxidovorans OM5] Length = 150 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 72/128 (56%), Positives = 95/128 (74%), Gaps = 4/128 (3%) Query: 80 SNTKSHNLILQVNTNDPAAMNLALNNAVNVAQYYKDLGEKVKIEVVTFGPGLHMLRDDTS 139 ++ K H +++QV+ ND A MNLALNN N+ Q+Y+D GE V++EVV +GPGL+M R+DTS Sbjct: 24 ADAKPHRIVIQVDQNDAATMNLALNNVTNIMQFYRDKGETVQVEVVAYGPGLNMYREDTS 83 Query: 140 PVKARLE---EMALSTPEVSFKACGNTQEKMHKAENKDIPIVRQAEVVKSGVVRVMELQE 196 PVK RL+ EMA + +V+F AC NT++ M K E I IV QA +V SGVVR+ ELQE Sbjct: 84 PVKGRLKQISEMAFPS-KVAFSACNNTKQGMEKKEGHPIAIVSQASLVPSGVVRLSELQE 142 Query: 197 KGWSYVKP 204 +GWSYVKP Sbjct: 143 QGWSYVKP 150 >ref|YP_001242708.1| YchN-like domain-containing protein [Bradyrhizobium sp. BTAi1] gb|ABQ38802.1| putative exported protein of unknown function with YchN-like domain [Bradyrhizobium sp. BTAi1] Length = 151 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/134 (55%), Positives = 99/134 (73%), Gaps = 2/134 (1%) Query: 73 NANARLPSNTKSHNLILQVNTNDPAAMNLALNNAVNVAQYYKDLGEKVKIEVVTFGPGLH 132 +A A L + K H + +QV+ NDPA MNLALNNA N+ + +K+ GE+V+IE+VT+GPGL+ Sbjct: 18 SAGASLSAEVKIHRVAIQVDQNDPAIMNLALNNASNIMETFKEKGEEVEIELVTYGPGLN 77 Query: 133 MLRDDTSPVKARLEEMA-LSTP-EVSFKACGNTQEKMHKAENKDIPIVRQAEVVKSGVVR 190 MLR+DTSPVK RL+++A LS P ++ F AC T+ M K E I IV +A +V SG VR Sbjct: 78 MLREDTSPVKDRLKQIAELSFPAKIKFSACNITKRGMEKREGHPIAIVAEASLVPSGAVR 137 Query: 191 VMELQEKGWSYVKP 204 +MELQE GWSY+KP Sbjct: 138 LMELQESGWSYLKP 151 >ref|YP_487978.1| hypothetical protein RPB_4380 [Rhodopseudomonas palustris HaA2] gb|ABD09067.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 150 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 71/127 (55%), Positives = 94/127 (74%), Gaps = 2/127 (1%) Query: 80 SNTKSHNLILQVNTNDPAAMNLALNNAVNVAQYYKDLGEKVKIEVVTFGPGLHMLRDDTS 139 + KSH + +QV+ NDPA MNLALNNA N+ + YK GE V++EVVT+GPGLHMLR+DTS Sbjct: 24 AGAKSHRVAIQVDQNDPAVMNLALNNAANIMEAYKAKGEDVEVEVVTYGPGLHMLRNDTS 83 Query: 140 PVKARLEEMA-LSTPE-VSFKACGNTQEKMHKAENKDIPIVRQAEVVKSGVVRVMELQEK 197 PVK R++++A S P + F AC NT+ M K E + + ++ QA VV SG VR+MELQE Sbjct: 84 PVKDRIKQIADASFPATIKFTACDNTRLGMEKHEGRAVGVIPQASVVPSGAVRLMELQED 143 Query: 198 GWSYVKP 204 GWSY++P Sbjct: 144 GWSYLRP 150