BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0008.p (347 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772956.1| hypothetical protein blr6316 [Bradyrhizobium ja... 513 e-143 ref|YP_001242338.1| TRAP-type transporter domain-containing prot... 310 2e-82 ref|YP_001242709.1| hypothetical protein BBta_6916 [Bradyrhizobi... 266 5e-69 ref|YP_001203280.1| putative TRAP-type transport system protein,... 265 6e-69 ref|YP_001772433.1| hypothetical protein M446_5709 [Methylobacte... 226 4e-57 >ref|NP_772956.1| hypothetical protein blr6316 [Bradyrhizobium japonicum USDA 110] dbj|BAC51581.1| blr6316 [Bradyrhizobium japonicum USDA 110] Length = 347 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 244/290 (84%), Positives = 273/290 (94%) Query: 53 VTMNAWTVGLAGGLLEGAPIRLAAEIARVVDDGDKLHVLPVVTRGPTENVNSLLYLRGID 112 ++MNAWT+GLAGGLLEGAPIRLAAEIARVVDDGD LHVLPVVTRG EN+NSLLYLRGID Sbjct: 54 ISMNAWTIGLAGGLLEGAPIRLAAEIARVVDDGDNLHVLPVVTRGAAENLNSLLYLRGID 113 Query: 113 AAIINSDVLEEYRSQVPDIQQRLAFVLNLFPSELHIFVRPEIQSLSDLAGKKVNFNNLGT 172 AAIINSD LEEY+ QVPDIQ+R+A+VLNLFPSELHIFVRPEI++L+DLAGKKVNFN LGT Sbjct: 114 AAIINSDALEEYKIQVPDIQRRIAYVLNLFPSELHIFVRPEIRTLNDLAGKKVNFNTLGT 173 Query: 173 AAAYSGPLIFSRLGVDVEKTFIPHQVALEQMRKGEMAAVVFITSKPVDAFVRARWEPGFK 232 AAAYSGPLIFSRL ++VEKTFIPHQVALEQMRKGEMAAVVFITSKPVDAFVR RWEPGFK Sbjct: 174 AAAYSGPLIFSRLNLEVEKTFIPHQVALEQMRKGEMAAVVFITSKPVDAFVRGRWEPGFK 233 Query: 233 FLPVPYDKRFEDFYLPASLEATEYPNLIKQGERVTTIAVPTALVAFNFPAKSNRYERLAR 292 FLP+PY+ +FED+YLPA+L+ T+YPNLIK GERV+TIAVPTALVAFN+PA SNR ER+AR Sbjct: 234 FLPLPYESKFEDYYLPAALDGTDYPNLIKPGERVSTIAVPTALVAFNWPANSNRSERVAR 293 Query: 293 FVEYLFSRIDKLQQPGFDQKWKTINLAATVPGLTRFPAAQAWLDREPRAT 342 F+++LFSRID+LQ PGFD KWK+INLAATVPGLTR PAAQ WLDR+PRAT Sbjct: 294 FIDHLFSRIDRLQGPGFDPKWKSINLAATVPGLTRVPAAQLWLDRQPRAT 343 >ref|YP_001242338.1| TRAP-type transporter domain-containing protein [Bradyrhizobium sp. BTAi1] gb|ABQ38432.1| putative exported protein of unknown function with TRAP-type uncharacterized transport system domain [Bradyrhizobium sp. BTAi1] Length = 387 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 146/292 (50%), Positives = 206/292 (70%), Gaps = 4/292 (1%) Query: 56 NAWTVGLAGGLLEGAPIRLAAEIARVVDDGDKLHVLPVVTRGPTENVNSLLYLRGIDAAI 115 N WTVG+AGGLLEG IR AAE+A+V+DD L VLP+VT G N+ LLYLRG+D I Sbjct: 49 NEWTVGIAGGLLEGTNIRFAAEMAKVLDDRPNLRVLPMVTYGALGNIEDLLYLRGVDVTI 108 Query: 116 INSDVLEEY--RSQVPDIQQRLAFVLNLFPSELHIFVRPEIQSLSDLAGKKVNFNNLGTA 173 ++DVL+E+ + +I+ R+ ++ + + +E+H++VRPEI++L DLAGKKV+FN +G+A Sbjct: 109 TSADVLDEFVRNGTLANIKNRIRYICSFYINEMHVYVRPEIKTLEDLAGKKVSFNTVGSA 168 Query: 174 AAYSGPLIFSRLGVDVEKTFIPHQVALEQMRKGEMAAVVFITSKPVDAFVRARWEPGFKF 233 A +G ++F RL ++ EK FI + VALE+MR GE+A VV +T KP D F + + EPGF F Sbjct: 169 ANLTGGIVFDRLKINAEKVFINNSVALEKMRSGEIAGVVHVTGKPTDLFAKFKPEPGFHF 228 Query: 234 LPVPYDKRFEDFYLPASLEATEYPNLIKQGERVTTIAVPTALVAFNFPAKSNRYERLARF 293 LP+P+ + +D+Y+P L + +YPNL+K GE V TI VP L +N+ ++ RY R++RF Sbjct: 229 LPIPFARSLQDYYVPTKLTSQDYPNLLKPGETVETIGVPQVLAVYNWSPETERYRRVSRF 288 Query: 294 VEYLFSRIDKLQQPGFDQKWKTINLAATVPGLTRFPAAQAWL--DREPRATA 343 VEYLF R D+ +QP F KW INLA+++PG TRF AA+ L R P A A Sbjct: 289 VEYLFKRFDQFKQPPFHPKWNEINLASSLPGWTRFRAAEELLASSRPPEAEA 340 >ref|YP_001242709.1| hypothetical protein BBta_6916 [Bradyrhizobium sp. BTAi1] gb|ABQ38803.1| hypothetical protein BBta_6916 [Bradyrhizobium sp. BTAi1] Length = 420 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 132/289 (45%), Positives = 191/289 (66%), Gaps = 3/289 (1%) Query: 52 QVTMNAWTVGLAGGLLEGAPIRLAAEIARVVDDGDKLHVLPVVTRGPTENVNSLLYLRGI 111 + MN WTVGLA GL +G +R A+E+AR +DDGD + ++P+VTRG T N+ LLYLRG+ Sbjct: 76 KTRMNQWTVGLAAGLPDGGFVRFASEMARTMDDGDNMRLIPMVTRGTTSNIADLLYLRGV 135 Query: 112 DAAIINSDVLEEYRSQ--VPDIQQRLAFVLNLFPSELHIFVRPEIQSLSDLAGKKVNFNN 169 D AI +D + Y Q + +I R+ +VL F S++HI+ R E +SL DL G+K+ Sbjct: 136 DVAITYADAFDFYVRQAGLANINDRIRYVLRFFISDVHIYARNEFKSLQDLRGQKIAVGT 195 Query: 170 LGTAAAYSGPLIFSRLGVDVEKTFIPHQVALEQMRKGEMAAVVFITSKPVDAFVRARW-E 228 G AAA++GPLIF RLG+D+E + VALE++ KGE+AA+V++ SKP + F + + Sbjct: 196 AGVAAAHTGPLIFRRLGIDIEPVAVGGPVALEKLHKGEIAAMVYVASKPGEVFSSMKAAD 255 Query: 229 PGFKFLPVPYDKRFEDFYLPASLEATEYPNLIKQGERVTTIAVPTALVAFNFPAKSNRYE 288 PGF F+P+PY +F DFY P +++A YP L+ + TIAVP+ L +N+ S+R + Sbjct: 256 PGFHFVPIPYTSQFSDFYYPTAIKAETYPALLAPDTSIETIAVPSVLAVYNWKPGSDRAD 315 Query: 289 RLARFVEYLFSRIDKLQQPGFDQKWKTINLAATVPGLTRFPAAQAWLDR 337 R+ RFVE LF+ + +LQQP F WK +NL A VPG R+P + L+R Sbjct: 316 RVNRFVETLFTNLARLQQPPFHPGWKDLNLDAQVPGWQRYPYVETVLER 364 >ref|YP_001203280.1| putative TRAP-type transport system protein, periplasmic component [Bradyrhizobium sp. ORS 278] emb|CAL75043.1| conserved hypothetical protein; putative TRAP-type uncharacterized transport system protein, periplasmic component [Bradyrhizobium sp. ORS 278] Length = 351 Score = 265 bits (678), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 131/286 (45%), Positives = 191/286 (66%), Gaps = 3/286 (1%) Query: 55 MNAWTVGLAGGLLEGAPIRLAAEIARVVDDGDKLHVLPVVTRGPTENVNSLLYLRGIDAA 114 MN WTVGLA GL +G +R A+E+AR +DDGD + ++P+VTRG T N+ LLYLRG+D A Sbjct: 11 MNQWTVGLAAGLPDGGFVRFASEMARTMDDGDNMRLIPMVTRGTTSNIADLLYLRGVDVA 70 Query: 115 IINSDVLEEYRSQ--VPDIQQRLAFVLNLFPSELHIFVRPEIQSLSDLAGKKVNFNNLGT 172 I +D + Y Q + +I R+ +VL F S++HI+ R E ++L DL G+K+ G Sbjct: 71 ITYADAFDFYAKQAGLANINDRIRYVLRFFISDVHIYAREEFKTLQDLKGQKIAVGTAGV 130 Query: 173 AAAYSGPLIFSRLGVDVEKTFIPHQVALEQMRKGEMAAVVFITSKPVDAFVRARW-EPGF 231 AAA++GPLIF RLG+D++ + VALE++ KGE+AA+V++ SKP + F + +PGF Sbjct: 131 AAAHTGPLIFRRLGIDIQPVAVGGPVALEKLHKGEIAAMVYVASKPGEVFSGMKTADPGF 190 Query: 232 KFLPVPYDKRFEDFYLPASLEATEYPNLIKQGERVTTIAVPTALVAFNFPAKSNRYERLA 291 F+P+PY K+F DFY P +++A YP L+ + TIAVP+ L +N+ S+R +R+ Sbjct: 191 HFVPIPYTKQFADFYYPTAIKAETYPALLAPDTSIETIAVPSVLAVYNWKPGSDRADRVN 250 Query: 292 RFVEYLFSRIDKLQQPGFDQKWKTINLAATVPGLTRFPAAQAWLDR 337 RFV+ LFS + +LQQP F WK +NL A VPG R+P + L+R Sbjct: 251 RFVDTLFSNLGRLQQPPFHPGWKDLNLEAQVPGWQRYPYVETVLER 296 >ref|YP_001772433.1| hypothetical protein M446_5709 [Methylobacterium sp. 4-46] gb|ACA19999.1| conserved hypothetical protein [Methylobacterium sp. 4-46] Length = 381 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 118/293 (40%), Positives = 172/293 (58%), Gaps = 4/293 (1%) Query: 56 NAWTVGLAGGLLEGAPIRLAAEIARVVDDGDKLHVLPVVTRGPTENVNSLLYLRGIDAAI 115 N+ V + G + G I++A +++ V+DDGD L +LPV+ +G +N+ +L LRGID I Sbjct: 41 NSGVVTVISGTVSGTFIQIANDLSFVLDDGDALRILPVIGKGADQNLRDILMLRGIDLGI 100 Query: 116 INSDVLEEYR--SQVPDIQQRLAFVLNLFPSELHIFVRPEIQSLSDLAGKKVNFNNLGTA 173 + SD LE R +Q+ + L ++ LF E H+ P+I ++ LAGK VNF+ G+ Sbjct: 101 VRSDGLEALRRDAQLGGAAKSLTYIARLFTDEAHLIAGPDITNIRQLAGKTVNFDLQGSG 160 Query: 174 AAYSGPLIFSRLGVDVEKTFIPHQVALEQMRKGEMAAVVFITSKPVDAFVRARWEPGFKF 233 A Y+G LIF LG+ V T + E ++ GE+AA ++ KP+ A + F Sbjct: 161 ANYTGRLIFELLGIPVVATNYDQLTSYEMLKSGEIAATFQMSGKPIPAVAKLDAANRFHL 220 Query: 234 LPVPYDKRFEDFYLPASLEATEYPNLIKQGERVTTIAVPTALVAFNFPAKSNRYERLARF 293 L VP+D++ + YLP +YPNL+ G V T+ V + L A+N+P KS+RY+++ARF Sbjct: 221 LEVPFDQKIAELYLPGEFTHEDYPNLVPGGP-VKTVTVSSILAAYNWPEKSDRYQKIARF 279 Query: 294 VEYLFSRIDKLQQPGFDQKWKTINLAATVPGLTRFPAAQAWLDRE-PRATANP 345 E FS+I QQP KW +NLAA +PG TRF AAQ WLDR P A P Sbjct: 280 TEAFFSKIAAFQQPARHPKWAEVNLAAEIPGWTRFKAAQQWLDRNRPSEAAGP 332