BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0001.p (463 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001203585.1| hypothetical protein BRADO1457 [Bradyrhizobi... 510 e-142 ref|NP_766968.1| hypothetical protein blr0328 [Bradyrhizobium ja... 480 e-133 ref|YP_004612475.1| hypothetical protein Mesop_3943 [Mesorhizobi... 322 7e-86 ref|YP_004142634.1| hypothetical protein Mesci_3463 [Mesorhizobi... 322 7e-86 ref|ZP_00055072.2| COG3287: Uncharacterized conserved protein [M... 321 2e-85 >ref|YP_001203585.1| hypothetical protein BRADO1457 [Bradyrhizobium sp. ORS 278] emb|CAL75348.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 388 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 242/379 (63%), Positives = 307/379 (81%), Gaps = 4/379 (1%) Query: 85 IVVVQAKTDGPREAADEIARQLAAADLAMLVVFVSPFYEPQTFIAELSSRMPDVPIFGCT 144 ++ ++K AA +I QL A LAM+++F+SP Y+PQ FIA +++ +P+VP++GCT Sbjct: 14 VIATKSKAATVAAAAADIRGQLPADGLAMVLIFLSPHYDPQAFIAAITASLPNVPVYGCT 73 Query: 145 TAGELSPSGWDEDSVVAMGFNAADFVIAARPLFDLTTFRVDHGRSMCTELQNEFAQRTEH 204 TAGELSP GW+++SVVA+ F A DF + A+P+F L+ FRVD GR + EL+ + + + Sbjct: 74 TAGELSPDGWEDNSVVALAFAADDFTVVAQPIFGLSGFRVDEGRHLGNELRQDLLRDGD- 132 Query: 205 CDHTHDSFGLLFIDGMCQREETIMSAIYASLGDIPVVGGSAGDGLRFEKSWVFHGGEAFT 264 FGL+ IDG+CQREE IMSAIYASL +IP+VGGSAGDGLRFE++WVF+ G+A T Sbjct: 133 ---GEGVFGLVLIDGLCQREEAIMSAIYASLDNIPLVGGSAGDGLRFERTWVFYQGKAHT 189 Query: 265 DAAVLILIRTRLPFRLFKCDHFEPTSTKMVVTEADIEHRIVKELNAEPAALEYSRAVGLS 324 DAA+LILIRT LPFRLFKCD+FEPTSTKMVVTEAD+E RIVK+LNAEPAA EY RAVG++ Sbjct: 190 DAALLILIRTSLPFRLFKCDNFEPTSTKMVVTEADLEQRIVKQLNAEPAAEEYCRAVGIA 249 Query: 325 ESKLELFSFAAHPVLVRVGGAYYARSIQRTNPDGSLQFFCAIDEGMVLTVARERDPIDVT 384 +S+L+ F FAAHPVLVRVGG+Y+ARSIQR +PDGSL+FFCAIDEGMVLT AR R+ + Sbjct: 250 DSELDPFLFAAHPVLVRVGGSYFARSIQRVSPDGSLRFFCAIDEGMVLTAARSRNSVAAA 309 Query: 385 SRLLKELTEDLGEVSMFIGFECVLRRLDVEQRQLSREMSELYRRNKVIGFQTYGEQYRSM 444 +L E+ +DLGEVS+FIGFEC+LRRLD EQ Q +REMSELYR N+++GF TYGEQY SM Sbjct: 310 REMLAEVRDDLGEVSIFIGFECILRRLDAEQHQFAREMSELYRDNRIVGFHTYGEQYGSM 369 Query: 445 HVNQTLTGIAIGKRALAPQ 463 HVNQTLTG+AIG+RA AP+ Sbjct: 370 HVNQTLTGVAIGRRAGAPR 388 >ref|NP_766968.1| hypothetical protein blr0328 [Bradyrhizobium japonicum USDA 110] dbj|BAC45593.1| blr0328 [Bradyrhizobium japonicum USDA 110] Length = 388 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 229/377 (60%), Positives = 294/377 (77%), Gaps = 1/377 (0%) Query: 82 ADSIVVVQAKTDGPREAADEIARQLAAADLAMLVVFVSPFYEPQTFIAELSSRMPDVPIF 141 A + V ++K EA E+A QL + +LA+++VF+SP Y+P FIAE++ + + + Sbjct: 11 ASGVAVAKSKAASVDEAVAELAAQLPSDELALILVFLSPSYDPHHFIAEITRQFDETQVC 70 Query: 142 GCTTAGELSPSGWDEDSVVAMGFNAADFVIAARPLFDLTTFRVDHGRSMCTELQNEFAQR 201 GCTTAGEL+P GWDE+SVVA+ F+ ADF A RP+ +L +FRV+ GR + EL++E + Sbjct: 71 GCTTAGELAPDGWDENSVVALAFSRADFSAAVRPILNLDSFRVEDGRRIGGELRHELLRI 130 Query: 202 TEHCDHTHDSFGLLFIDGMCQREETIMSAIYASLGDIPVVGGSAGDGLRFEKSWVFHGGE 261 T D + FGL+ IDG+C+REE +MSAIYASL DIPVVGGSAGDG+RFEK+WVF G+ Sbjct: 131 TPQVDRG-NPFGLVLIDGLCRREEAVMSAIYASLDDIPVVGGSAGDGMRFEKTWVFCDGK 189 Query: 262 AFTDAAVLILIRTRLPFRLFKCDHFEPTSTKMVVTEADIEHRIVKELNAEPAALEYSRAV 321 A T+AA+LIL+ T LPFR FKCD+FEP+ KMVVTEADIE+R V+ELNAEPAA EYSR V Sbjct: 190 AHTNAALLILLNTSLPFRAFKCDNFEPSPQKMVVTEADIENRTVRELNAEPAAEEYSRMV 249 Query: 322 GLSESKLELFSFAAHPVLVRVGGAYYARSIQRTNPDGSLQFFCAIDEGMVLTVARERDPI 381 G+ ++KL+ FSFA+HPVLVRVGGAYYARSIQR PDGSL FFCAIDEGMVLT A R + Sbjct: 250 GILDAKLDPFSFASHPVLVRVGGAYYARSIQRVEPDGSLHFFCAIDEGMVLTAATSRSLV 309 Query: 382 DVTSRLLKELTEDLGEVSMFIGFECVLRRLDVEQRQLSREMSELYRRNKVIGFQTYGEQY 441 T E+ + +G+VS++IGFEC+LRRLD EQ QL+R+MS+LYR+N+V+GF TYGEQ+ Sbjct: 310 GSTRDTFAEIRDQIGDVSLYIGFECLLRRLDAEQHQLARDMSDLYRQNRVVGFHTYGEQF 369 Query: 442 RSMHVNQTLTGIAIGKR 458 SMHVNQT TG+AIG+R Sbjct: 370 GSMHVNQTFTGVAIGRR 386 >ref|YP_004612475.1| hypothetical protein Mesop_3943 [Mesorhizobium opportunistum WSM2075] gb|AEH88381.1| domain of unknown function DUF1745 [Mesorhizobium opportunistum WSM2075] Length = 368 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 162/348 (46%), Positives = 227/348 (65%), Gaps = 1/348 (0%) Query: 114 LVVFVSPFYEPQTFIAELSSRMPDVPIFGCTTAGELSPSGWDEDSVVAMGFNAADFVIAA 173 L+ F E L + P + GC+TAGE++P G ++ V+AM +A F + Sbjct: 21 LLFFSQSLVEADALSRALLTHAPGLHHAGCSTAGEITPQGLEDGHVLAMLLPSAAFTAVS 80 Query: 174 RPLFDLTTFRVDHGRSMCTELQNEFAQRTEHCDHTHDSFGLLFIDGMCQREETIMSAIYA 233 + DL++ +D S L+ R +HT ++F L FIDG+ EE + SAI+ Sbjct: 81 TMVDDLSSSGMDRITSEVEALRRNLRGRVG-GEHTRNTFALCFIDGLSYAEEAVSSAIHW 139 Query: 234 SLGDIPVVGGSAGDGLRFEKSWVFHGGEAFTDAAVLILIRTRLPFRLFKCDHFEPTSTKM 293 L DIP++GGSAGD L+FE + + G +D+A+++LI T +PF +FK D+F PT K+ Sbjct: 140 GLDDIPLLGGSAGDDLKFETTRLISNGRVSSDSAIIVLIATEIPFHVFKTDNFVPTDEKL 199 Query: 294 VVTEADIEHRIVKELNAEPAALEYSRAVGLSESKLELFSFAAHPVLVRVGGAYYARSIQR 353 VVT +D +HRIV+E NA AA EY+ +VG+ L SFA+HPV+V+VGG YY RSIQR Sbjct: 200 VVTASDADHRIVREFNATNAAEEYAASVGILPQALTPLSFASHPVVVKVGGEYYCRSIQR 259 Query: 354 TNPDGSLQFFCAIDEGMVLTVARERDPIDVTSRLLKELTEDLGEVSMFIGFECVLRRLDV 413 + DGSL FFCAID+G+VL++A+ +D ++ T L+E+ E LG + + +GF+CVLRRLD Sbjct: 260 MHADGSLSFFCAIDDGVVLSIAQPKDMVESTRAALREVEERLGGIDLILGFDCVLRRLDA 319 Query: 414 EQRQLSREMSELYRRNKVIGFQTYGEQYRSMHVNQTLTGIAIGKRALA 461 RQ+ R++SELYR N V+GF TYGEQYRSMH+NQT TGIA G R A Sbjct: 320 RNRQVFRDISELYRINNVVGFGTYGEQYRSMHLNQTFTGIAFGDRQAA 367 >ref|YP_004142634.1| hypothetical protein Mesci_3463 [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV12584.1| domain of unknown function DUF1745 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 416 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 161/348 (46%), Positives = 226/348 (64%), Gaps = 1/348 (0%) Query: 114 LVVFVSPFYEPQTFIAELSSRMPDVPIFGCTTAGELSPSGWDEDSVVAMGFNAADFVIAA 173 L+ F E L + P + GC+TAGE++P G ++ V+AM + F + Sbjct: 69 LLFFSQSLVEASALSQALMTHAPALHHAGCSTAGEITPQGLEDGHVLAMLLPSPAFTAVS 128 Query: 174 RPLFDLTTFRVDHGRSMCTELQNEFAQRTEHCDHTHDSFGLLFIDGMCQREETIMSAIYA 233 + +L++ +D L+ R CD T +F L FIDG+ EE + SAI+ Sbjct: 129 VMVENLSSSGMDRITGEVETLRRSLRARL-GCDRTKGTFALCFIDGLSYAEEAVSSAIHW 187 Query: 234 SLGDIPVVGGSAGDGLRFEKSWVFHGGEAFTDAAVLILIRTRLPFRLFKCDHFEPTSTKM 293 L DIP++GGSAGD L+FE + + G+ +D+A+++LI T +PF +FK D+F PT K+ Sbjct: 188 GLDDIPLLGGSAGDDLKFETTRLISNGKVTSDSAIIVLISTEIPFHVFKTDNFVPTDEKL 247 Query: 294 VVTEADIEHRIVKELNAEPAALEYSRAVGLSESKLELFSFAAHPVLVRVGGAYYARSIQR 353 VVT +D +HRIV+E NA AA EY+ +VG+ L SFA+HPV+V+VGG YY RSIQ+ Sbjct: 248 VVTASDPDHRIVREFNATNAAQEYAASVGIVAQMLTPLSFASHPVVVKVGGQYYCRSIQK 307 Query: 354 TNPDGSLQFFCAIDEGMVLTVARERDPIDVTSRLLKELTEDLGEVSMFIGFECVLRRLDV 413 + DGSL FFCAID+G+VL++A+ +D ++ T L+++ E LG + M +GF+CVLRRLD Sbjct: 308 MHADGSLSFFCAIDDGVVLSIAQPKDMVESTRAALRDVEERLGGIDMILGFDCVLRRLDA 367 Query: 414 EQRQLSREMSELYRRNKVIGFQTYGEQYRSMHVNQTLTGIAIGKRALA 461 RQ+ RE+SELYR N VIGF TYGEQYRSMH+NQT TGIA G+R A Sbjct: 368 RNRQVFREISELYRVNNVIGFGTYGEQYRSMHLNQTFTGIAFGERQAA 415 >ref|ZP_00055072.2| COG3287: Uncharacterized conserved protein [Magnetospirillum magnetotacticum MS-1] Length = 382 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 160/362 (44%), Positives = 228/362 (62%), Gaps = 1/362 (0%) Query: 96 REAADEIARQLAAADLAMLVVFVSPFYEPQTFIAELSSRMPDVPIFGCTTAGELSPSGWD 155 +A E+ Q+ D A++++F SP Y+ + ++ D GCTTAGE++P G+ Sbjct: 19 HQAVTELRAQIDQPDTALVLLFCSPAYDLEQLGPAIAEAFGDTLTLGCTTAGEITPQGYC 78 Query: 156 EDSVVAMGFNAADFVIAARPLFDLTTFRVDHGRSMCTELQNEFAQRTEHCDHTHDSFGLL 215 S+ + N A + L+ F HG E+ AQ TE D +F +L Sbjct: 79 TGSLTGLSLNRDACHADAVHIDRLSEFAFSHGLDSVREVLARMAQ-TEGPDFASGTFAML 137 Query: 216 FIDGMCQREETIMSAIYASLGDIPVVGGSAGDGLRFEKSWVFHGGEAFTDAAVLILIRTR 275 IDGM E++++SA++A LG+IP+ GGSAGD L F ++WV+ G +D A L+L+ T Sbjct: 138 MIDGMSSAEDSVLSALHAGLGEIPLFGGSAGDDLEFRRTWVYKDGCFHSDMAALVLVHTP 197 Query: 276 LPFRLFKCDHFEPTSTKMVVTEADIEHRIVKELNAEPAALEYSRAVGLSESKLELFSFAA 335 PFR+FK HF + TKMV+T AD HRIV E+NAEPA E++R +G+ +L FA Sbjct: 198 YPFRVFKTQHFVGSDTKMVITGADPLHRIVTEINAEPAGREFARMLGMEVEELTPMIFAT 257 Query: 336 HPVLVRVGGAYYARSIQRTNPDGSLQFFCAIDEGMVLTVARERDPIDVTSRLLKELTEDL 395 HPV+VRVGGA Y RSIQ+ NPDGSL FFCAIDEG+VL+VA+ +P D +++ +L ++ Sbjct: 258 HPVVVRVGGADYVRSIQKVNPDGSLSFFCAIDEGLVLSVAQTVEPYDNLAQVFDDLQAEI 317 Query: 396 GEVSMFIGFECVLRRLDVEQRQLSREMSELYRRNKVIGFQTYGEQYRSMHVNQTLTGIAI 455 G + IG ECVLR L++E+ Q+ + M EL N V+GF TYGEQ+ +MHVNQT TG+A+ Sbjct: 318 GPPQLIIGCECVLRSLEMERTQMKKRMGELLIANNVVGFNTYGEQFNAMHVNQTFTGVAL 377 Query: 456 GK 457 G+ Sbjct: 378 GR 379