BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0108.0009.p         (76 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770946.1| N-acetylmuramoyl-L-alanine amidase [Bradyrhizob...   141   4e-32
ref|ZP_08630069.1| N-acetylmuramoyl-L-alanine amidase [Bradyrhiz...   122   2e-26
ref|YP_532720.1| N-acetylmuramoyl-L-alanine amidase [Rhodopseudo...   121   4e-26
ref|YP_001991713.1| N-acetylmuramoyl-L-alanine amidase [Rhodopse...   120   7e-26
ref|YP_486621.1| N-acetylmuramoyl-L-alanine amidase [Rhodopseudo...   120   9e-26

>ref|NP_770946.1| N-acetylmuramoyl-L-alanine amidase [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC49571.1| blr4306 [Bradyrhizobium japonicum USDA 110]
          Length = 431

 Score =  141 bits (355), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 71/76 (93%)

Query: 1   MRTTVRMHKHPLKSAGFRVLKAPDVPSVLVEIGYVSNKGDLEHLVSESWRNKAVGSMVQA 60
           M++TVRMHKHPLKSAGFRVLKAPDVPSVLVEIGYVSNKGDLEHLVSE WR++AVG+M QA
Sbjct: 356 MKSTVRMHKHPLKSAGFRVLKAPDVPSVLVEIGYVSNKGDLEHLVSEGWRSRAVGAMAQA 415

Query: 61  IDTFFAKRLATAGSAK 76
           ID F AKRLATAGS+ 
Sbjct: 416 IDGFLAKRLATAGSSN 431


>ref|ZP_08630069.1| N-acetylmuramoyl-L-alanine amidase [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP07438.1| N-acetylmuramoyl-L-alanine amidase [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 428

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/76 (72%), Positives = 66/76 (86%)

Query: 1   MRTTVRMHKHPLKSAGFRVLKAPDVPSVLVEIGYVSNKGDLEHLVSESWRNKAVGSMVQA 60
           M+   RMHKHPLKSAGFRVLKA DVPSVLVE+GYVSNKGDL+HLVSESWR++ VGS+ QA
Sbjct: 353 MKAVARMHKHPLKSAGFRVLKAHDVPSVLVELGYVSNKGDLQHLVSESWRSRTVGSVAQA 412

Query: 61  IDTFFAKRLATAGSAK 76
           +D F  KR+ +AG++K
Sbjct: 413 VDAFLGKRVVSAGASK 428


>ref|YP_532720.1| N-acetylmuramoyl-L-alanine amidase [Rhodopseudomonas palustris
           BisB18]
 gb|ABD88401.1| N-acetylmuramoyl-L-alanine amidase [Rhodopseudomonas palustris
           BisB18]
          Length = 431

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 65/74 (87%)

Query: 1   MRTTVRMHKHPLKSAGFRVLKAPDVPSVLVEIGYVSNKGDLEHLVSESWRNKAVGSMVQA 60
           M++  RMHKHPLKSAGF+VLKAPDVPSVL+E+GYVSNKGDL+ LVSE+WR + VGS+ QA
Sbjct: 356 MKSAARMHKHPLKSAGFKVLKAPDVPSVLLELGYVSNKGDLKQLVSENWRTRTVGSVAQA 415

Query: 61  IDTFFAKRLATAGS 74
           +D FFAKR+ + G+
Sbjct: 416 VDAFFAKRVVSVGA 429


>ref|YP_001991713.1| N-acetylmuramoyl-L-alanine amidase [Rhodopseudomonas palustris
           TIE-1]
 gb|ACF01238.1| N-acetylmuramoyl-L-alanine amidase [Rhodopseudomonas palustris
           TIE-1]
          Length = 436

 Score =  120 bits (301), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 52/73 (71%), Positives = 64/73 (87%)

Query: 1   MRTTVRMHKHPLKSAGFRVLKAPDVPSVLVEIGYVSNKGDLEHLVSESWRNKAVGSMVQA 60
           M+ T RMHK P+KSAGFRVLKAPDVPSVL+E+GYVSNK DL++L+SE WR+K VG++ QA
Sbjct: 361 MKATTRMHKRPMKSAGFRVLKAPDVPSVLIELGYVSNKADLQYLLSEQWRSKTVGAVAQA 420

Query: 61  IDTFFAKRLATAG 73
           ID+F +KRL TAG
Sbjct: 421 IDSFLSKRLVTAG 433


>ref|YP_486621.1| N-acetylmuramoyl-L-alanine amidase [Rhodopseudomonas palustris
           HaA2]
 gb|ABD07710.1| N-acetylmuramoyl-L-alanine amidase [Rhodopseudomonas palustris
           HaA2]
          Length = 436

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 52/73 (71%), Positives = 64/73 (87%)

Query: 1   MRTTVRMHKHPLKSAGFRVLKAPDVPSVLVEIGYVSNKGDLEHLVSESWRNKAVGSMVQA 60
           M+   R+HK+PLKSAGFRVLKAPDVPSVL+E+GYVSNKGDL+ L+SE WR K VG++ QA
Sbjct: 361 MKGATRLHKNPLKSAGFRVLKAPDVPSVLIELGYVSNKGDLKQLISEQWRTKTVGAVSQA 420

Query: 61  IDTFFAKRLATAG 73
           ID+FFA+RL +AG
Sbjct: 421 IDSFFARRLVSAG 433