BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0108.0007.p (816 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_486622.1| ribonuclease [Rhodopseudomonas palustris HaA2] ... 1038 0.0 ref|YP_569573.1| ribonuclease [Rhodopseudomonas palustris BisB5]... 1022 0.0 ref|YP_004109375.1| ribonuclease, Rne/Rng family [Rhodopseudomon... 1017 0.0 ref|ZP_01046438.1| ribonuclease E and G [Nitrobacter sp. Nb-311A... 982 0.0 ref|YP_318333.1| ribonuclease E and G [Nitrobacter winogradskyi ... 967 0.0 >ref|YP_486622.1| ribonuclease [Rhodopseudomonas palustris HaA2] gb|ABD07711.1| RNAse E [Rhodopseudomonas palustris HaA2] Length = 1060 Score = 1038 bits (2684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 604/846 (71%), Positives = 651/846 (76%), Gaps = 87/846 (10%) Query: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE Sbjct: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEEHENRGHRRRSRHRNARR 120 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEE+E R RRRSRHR+ RR Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEENEQRSTRRRSRHRSHRR 120 Query: 121 RGHGERVQSEVIEGANDTQALPTIEAHEHPVD-AEHHEHDAGHYDHGVVAHEGHEHEAHD 179 RG GERV SE++E + A P H+ D A+ D GH AH HE HD Sbjct: 121 RGSGERVTSEIVEASAGAVAEP----HDQFSDLADSDPADNGH------AHADHERPMHD 170 Query: 180 HAHHEDHEHHHDHGQDDRDHDDHGHHDHGHDDHHDHDHAHDHDHAAE-VSEAAVADAPSD 238 D G + D+ GHD HHD + H +AE + E AVA + +D Sbjct: 171 IPAD-------DAGDVTQASADNAE---GHDGHHDAERQGYHAASAEYLDETAVAPSIAD 220 Query: 239 PVVAVVEASAASAAPETVEAVEVNHEPERAHEEQIEENAAHADDAPHVASDDVHVAADEQ 298 + A+ +T+ + +EEN+ HA+DAP + E Sbjct: 221 GEQPTLPDFGATPHAQTLS-------------QDVEENSGHAEDAPFPIA--------EG 259 Query: 299 AVGEYGALAEVVAPETGPGDEAGEDDEEDDGEEGEEED-------------------VVE 339 A E+G A GDE + D + D E+ D +VE Sbjct: 260 AEQEHGDDA---------GDELNDADGDADLEDAARSDTEADDEDEDEDEDDEAEEDIVE 310 Query: 340 SVGGDDVLEEVPERPFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRY 399 SVGGDDVLEEVPER FRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRY Sbjct: 311 SVGGDDVLEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRY 370 Query: 400 AVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASRSKPEIKRDFE 459 AVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASR+KPEIKRDFE Sbjct: 371 AVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASRTKPEIKRDFE 430 Query: 460 YLIRMWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYREARDFMK 519 YLIRMWETVRD+TLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGY+EARDFM Sbjct: 431 YLIRMWETVRDVTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYQEARDFMH 490 Query: 520 MLMPANVRAVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNS 579 MLMP+NVRAVK YRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNS Sbjct: 491 MLMPSNVRAVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNS 550 Query: 580 GRATREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDC 639 GR+TREHHIEDTALKTNLEA+EEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDC Sbjct: 551 GRSTREHHIEDTALKTNLEASEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDC 610 Query: 640 LRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPQCGGSGHVRSVSSVALQLLRG 699 LRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCP CGGSGHVRSVSSVALQLLRG Sbjct: 611 LRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRG 670 Query: 700 IEEILMKGATHNLVVRTRTDVALYVLNHKRGHLRDLEDSFRVSLSIVADATVHGQQSYI- 758 +EEILMKGATHNL+VRTR DVALYVLN KRGHLRDLE FRV+LS+V+D TV GQQS++ Sbjct: 671 LEEILMKGATHNLIVRTRADVALYVLNQKRGHLRDLETGFRVTLSVVSDPTVTGQQSFVI 730 Query: 759 ---------------XAAQAAAAPAQAEEADDEEELFEYEAEIETDETEGLADERAAGDE 803 AAQ AA P QAEE +++E +E+EAEIETDET GLADE A+ Sbjct: 731 DRGEQVHTLESAKALLAAQVAAYPVQAEEPFEDDEGYEFEAEIETDETVGLADEHASDSG 790 Query: 804 SGSAEG 809 G EG Sbjct: 791 EGEGEG 796 >ref|YP_569573.1| ribonuclease [Rhodopseudomonas palustris BisB5] gb|ABE39672.1| RNAse E [Rhodopseudomonas palustris BisB5] Length = 1043 Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust. Identities = 598/833 (71%), Positives = 649/833 (77%), Gaps = 71/833 (8%) Query: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE Sbjct: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEEHENRGHRRRSRHRNARR 120 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEE E R RRRSRHR+ RR Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESEQRSTRRRSRHRSHRR 120 Query: 121 RGHGERVQSEVIEGANDTQALPTIEAHEHPVDAEHHEHDAGHYDHGVVAHEGHEHEAHDH 180 RG+GERVQSE+++ + D H A+HH H+G H H+ Sbjct: 121 RGNGERVQSEIVDASAD---------QPHVDSADHH-------------HDGQAHPDHER 158 Query: 181 AHHEDHEHHHDHGQDDRDHDDHGHHDHGHDDHHDH-----DHAHDHDHAAE--VSEAAVA 233 HE EH + D G H HG DH ++ DH HD AA V+EAA Sbjct: 159 PMHELVEHESSYAPQASSSDAEGDHAHGGPDHQENHADAGDHGHDEPAAAPSIVAEAA-P 217 Query: 234 DAPSDPVVAVVEASAASAAPETVEAVEVNHEPERAHEEQIEENAAHADDAPHVASDDVHV 293 DAP P+ S+A APET ER E+Q +A+DAP ++ V Sbjct: 218 DAP--PLT-----SSAPIAPET-------DSDERGSEDQ----GGYAEDAPFPIAETVSA 259 Query: 294 AADEQAVGEYGALAEVVAPETGPGDEAGEDDEEDDGEEGEEEDVVESVGGDDVLEEVPER 353 + + D G+D+ +D+ ++ EED+VESVGGDDVLEEVPER Sbjct: 260 EHHDDEHDHDAGDDLI----DSDADSEGDDEADDEDDDEAEEDIVESVGGDDVLEEVPER 315 Query: 354 PFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGIS 413 FRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGIS Sbjct: 316 AFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGIS 375 Query: 414 RKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASRSKPEIKRDFEYLIRMWETVRDLTL 473 RKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGA+R+KPEIKRDFEYLIRMWETVRD+TL Sbjct: 376 RKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAARTKPEIKRDFEYLIRMWETVRDVTL 435 Query: 474 KSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYREARDFMKMLMPANVRAVKQYR 533 KSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGE GY+EARDFM MLMP+NVRAVK YR Sbjct: 436 KSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEPGYQEARDFMHMLMPSNVRAVKLYR 495 Query: 534 DGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRATREHHIEDTAL 593 DGQPLFSRMGVESQLDAMFSPTVQLRSGGYIV+NQTEALVSIDVNSGR+TREHHIEDTAL Sbjct: 496 DGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVLNQTEALVSIDVNSGRSTREHHIEDTAL 555 Query: 594 KTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRIS 653 KTN+EAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRIS Sbjct: 556 KTNMEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRIS 615 Query: 654 HFGLLEMSRQRIRASVLESSTEPCPQCGGSGHVRSVSSVALQLLRGIEEILMKGATHNLV 713 HFGLLEMSRQRIRASVLESSTEPC CGGSGHVRSVSSVALQLLRG+EEILMKGATHNL+ Sbjct: 616 HFGLLEMSRQRIRASVLESSTEPCAHCGGSGHVRSVSSVALQLLRGLEEILMKGATHNLI 675 Query: 714 VRTRTDVALYVLNHKRGHLRDLEDSFRVSLSIVADATVHGQQSYI--------------- 758 VRTR DVALYVLN KRGHLRDLE F+V+LS++AD TV GQQS++ Sbjct: 676 VRTRNDVALYVLNQKRGHLRDLETGFKVTLSVMADPTVTGQQSFVIDRGEQVHTLEAAKA 735 Query: 759 --XAAQAAAAPAQAEEADDEEELFEYEAEIETDETEGLADERAAGDESGSAEG 809 A AAA E +++E +E+EAEIETDET GL E +AGD S AEG Sbjct: 736 LLAAQVAAAPAQPEELPYEDDESYEFEAEIETDETVGLTGE-SAGD-SIEAEG 786 >ref|YP_004109375.1| ribonuclease, Rne/Rng family [Rhodopseudomonas palustris DX-1] gb|ADU44642.1| ribonuclease, Rne/Rng family [Rhodopseudomonas palustris DX-1] Length = 1053 Score = 1017 bits (2630), Expect = 0.0, Method: Compositional matrix adjust. Identities = 603/831 (72%), Positives = 655/831 (78%), Gaps = 71/831 (8%) Query: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 M NKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE Sbjct: 1 MANKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEEHENRGHRRRSRHRNARR 120 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEE E R RRRSRHR+ RR Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESEQRSSRRRSRHRSHRR 120 Query: 121 RGHGERVQSEVIEGANDTQALPTIEAHEHPVDAEHHEHDAGHYDHGVVAHEGHEHEAHD- 179 R +GERVQSE++E + D +DA + DA VV H HE + D Sbjct: 121 RNNGERVQSEIVETSADQ------------LDATVDQPDA------VVEH--HEAQETDA 160 Query: 180 HAHHEDHEHHHDHGQDDRDHDDHGHHDHGHDDHHDHDHAHDHDHAAEVSEAAVADAPSDP 239 +A E H G+ HD DH H D D A A +E + A P Sbjct: 161 YASGEPLMHELPAGEIAEQHD----ADH---KHTDVDAAPSEAPAPSPAEVSAAAEP--- 210 Query: 240 VVAVVEASAASAAPETVEAVEV--NHEPERAHEEQIEENAAHADDAPHVA-----SDDVH 292 A VE AA P A E +HE E ++ E A +A+DAP ++D H Sbjct: 211 --AAVEQPAAGEVPALFVAAEATASHEEETHGDDHAETRARYAEDAPFPIEGNDEAEDGH 268 Query: 293 VAADEQAVGEYGALAEVVAPETGPGDE--AGEDDEEDDGEEGEEEDVVE-SVGGDDVLEE 349 A D+ A E PET E AG +D++++ +E + E+ V SVGGDDVLEE Sbjct: 269 EAHDDHAEHE---------PETDTDTETEAGAEDDDEEDDEEDAEEDVVESVGGDDVLEE 319 Query: 350 VPERPFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARG 409 VPER FRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARG Sbjct: 320 VPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARG 379 Query: 410 GGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASRSKPEIKRDFEYLIRMWETVR 469 GGISRKITSAQDRSRLKEVVQDLDVPEGMG+ILRTAGA+R+KPEIKRDFEYLIRMWETVR Sbjct: 380 GGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGAARTKPEIKRDFEYLIRMWETVR 439 Query: 470 DLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYREARDFMKMLMPANVRAV 529 D+TLKSQAP LVYEEGSLIKRSLRDLYNKEIDE+ VAGEAGYREARDFM+MLMP+ VRAV Sbjct: 440 DVTLKSQAPMLVYEEGSLIKRSLRDLYNKEIDEVLVAGEAGYREARDFMQMLMPSQVRAV 499 Query: 530 KQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRATREHHIE 589 K YRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGR+TREHHIE Sbjct: 500 KLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHHIE 559 Query: 590 DTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQV 649 DTALKTN+EAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQV Sbjct: 560 DTALKTNMEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQV 619 Query: 650 GRISHFGLLEMSRQRIRASVLESSTEPCPQCGGSGHVRSVSSVALQLLRGIEEILMKGAT 709 GRISHFGLLEMSRQRIRASVLESSTEPCP CGGSGHVRSVSSVALQLLRG+EE+LMKGAT Sbjct: 620 GRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEEVLMKGAT 679 Query: 710 HNLVVRTRTDVALYVLNHKRGHLRDLEDSFRVSLSIVADATVHGQQSYI----------- 758 HNL+VRTRTDVALYVLNHKRGHLRDLE FRVSLS++AD TV GQQS++ Sbjct: 680 HNLIVRTRTDVALYVLNHKRGHLRDLETGFRVSLSVLADPTVSGQQSFVIDRGEQVHTLE 739 Query: 759 -----XAAQAAAAPAQAEEADDEEELFEYEAEIETDETEGLADERA--AGD 802 AAQ AA+PA +E +D++ +E+EAEIETDET GLADE+A AGD Sbjct: 740 TAKALLAAQIAASPAPIDEPEDDDG-YEFEAEIETDETVGLADEQASEAGD 789 >ref|ZP_01046438.1| ribonuclease E and G [Nitrobacter sp. Nb-311A] gb|EAQ35528.1| ribonuclease E and G [Nitrobacter sp. Nb-311A] Length = 1063 Score = 982 bits (2538), Expect = 0.0, Method: Compositional matrix adjust. Identities = 574/849 (67%), Positives = 637/849 (75%), Gaps = 83/849 (9%) Query: 2 PNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIEY 61 PNKMLIDATHPEETRVVVVRGNRVEEFDFE+AQRKQLRGNIYLAKVTRVEPSLQAAFIEY Sbjct: 21 PNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIEY 80 Query: 62 GGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEEHENRGHRRRSRHRNARRR 121 GGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEE E+R +RRRSRHRN+RRR Sbjct: 81 GGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESEDRPNRRRSRHRNSRRR 140 Query: 122 GHGERVQSEVIE-GANDTQALPTIEAHEHPVDAEHHEHDAGHYDHGVVAHEGHEHEAHDH 180 HGERVQS V+E G + + T ++ P D+ A DH HE E + HDH Sbjct: 141 DHGERVQSAVVEDGDREVAGIDTTQSDPPPDDS------ATDDDHLSPYHEAQEAQDHDH 194 Query: 181 AHHEDHEHHHDHGQDDRDHDDHGHHDHG-----HDDHHDHD-----HAHDH--------- 221 + +D +H H D RDH HD G + DHH+ D AHD Sbjct: 195 PNADDGDHDPLH-PDPRDHTHAAAHDVGSGSPYNSDHHETDDDNLQEAHDFARTSDSDDV 253 Query: 222 --DHAAEVSEAA----VADAPSDPVVAVVEASAASAAP------ETVEAVEVNHEPERAH 269 +H E+ E +A +P + + ++ A P + + P Sbjct: 254 IREHRDEIPEHTGNDLIASSPDEDLPSIAPDHATGIEPLADDGARNEHTISTDEAPATHG 313 Query: 270 EEQIEENAAHADDAPHVASDDVHVAADEQAVGEYGALAEVVAPETGPGDEAGEDDEEDDG 329 EE ENA HA PH +V + D V + + + Sbjct: 314 EEHDHENADHAGGHPH----EVELHGDGVRVEDDSIDDDEEEEQ---------------- 353 Query: 330 EEGEEEDVVESVGGDDVLEEVPERPFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAAL 389 VESVGGDD LEEVPER +RPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAAL Sbjct: 354 --------VESVGGDDALEEVPERAYRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAAL 405 Query: 390 TTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASR 449 TTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMG+ILRTAGA+R Sbjct: 406 TTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGAAR 465 Query: 450 SKPEIKRDFEYLIRMWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEA 509 +K EIKRDFEYLIRMWETVRD+TL+SQAPTLVYEEGSLIKRSLRDLY+KEIDEIQVAGEA Sbjct: 466 TKSEIKRDFEYLIRMWETVRDMTLRSQAPTLVYEEGSLIKRSLRDLYSKEIDEIQVAGEA 525 Query: 510 GYREARDFMKMLMPANVRAVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQT 569 GY EARDFMKMLMP+NVR VKQYRD QPLFSRMGVESQLDAMF PTVQLRSGGYIVINQT Sbjct: 526 GYHEARDFMKMLMPSNVRTVKQYRDCQPLFSRMGVESQLDAMFLPTVQLRSGGYIVINQT 585 Query: 570 EALVSIDVNSGRATREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNN 629 EALVSIDVNSGR+TREHHI+DTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKR+N Sbjct: 586 EALVSIDVNSGRSTREHHIKDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRSN 645 Query: 630 RAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPQCGGSGHVRSV 689 RAVERKLS+CLR DRARIQVGRISHFGLLEMSRQRIRAS+LESSTEPCP CGG+GHVRSV Sbjct: 646 RAVERKLSECLRHDRARIQVGRISHFGLLEMSRQRIRASMLESSTEPCPHCGGTGHVRSV 705 Query: 690 SSVALQLLRGIEEILMKGATHNLVVRTRTDVALYVLNHKRGHLRDLEDSFRVSLSIVADA 749 SVALQLLR +EE+L+KGATHNL+VRTR +VALYVLN KRGHLR LE SF+V LS+VAD Sbjct: 706 PSVALQLLRSLEEVLIKGATHNLIVRTRINVALYVLNQKRGHLRALEHSFKVGLSVVADP 765 Query: 750 TVHGQQSYI----------------XAAQAAAAPAQAEEADDEEELFEYEAEIETDETEG 793 ++ GQQS++ AAQ A P QAEEA ++E+ + EAE+E D+ E Sbjct: 766 SLEGQQSFVIDRGEQIHTLEAAKALLAAQLATYPPQAEEAQEDEQPLDVEAEVEADDAET 825 Query: 794 LADERAAGD 802 ADERA G+ Sbjct: 826 RADERAGGE 834 >ref|YP_318333.1| ribonuclease E and G [Nitrobacter winogradskyi Nb-255] gb|ABA04981.1| RNAse E [Nitrobacter winogradskyi Nb-255] Length = 1059 Score = 967 bits (2500), Expect = 0.0, Method: Compositional matrix adjust. Identities = 577/853 (67%), Positives = 632/853 (74%), Gaps = 90/853 (10%) Query: 2 PNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIEY 61 PNKMLIDATHPEETRVVVVRGNRVEEFDFE+AQRKQLRGNIYLAKVTRVEPSLQAAFIEY Sbjct: 26 PNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIEY 85 Query: 62 GGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEEHENRGHRRRSRHRNARRR 121 GGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEE E+R RRRSRHRNARRR Sbjct: 86 GGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESEDRSSRRRSRHRNARRR 145 Query: 122 GHGERVQSEVIE-------GANDTQALPTIEAHEHPVDAEHHEHDAGHYDHGVVAHEGHE 174 HGERVQS V+E GA+ TQ+ P+ H P H E AG H G + Sbjct: 146 DHGERVQSAVVENGEHQVAGADGTQSDPS---HSDP---SHDEFAAGD-------HLGQQ 192 Query: 175 HEAHDH------------------------AHHEDHEHHHDHGQDDRDHDDHGHHDHG-H 209 H+ DH + D+E DH + D D+G H Sbjct: 193 HDVQDHDQPNDPDHHHLDDDDHSHESGSISLYGSDYETVADHLPESPDFAFAADSDNGDH 252 Query: 210 DDHHDHDHAHDHDHAAEVSEAAVADAPSDPVVAVVEASAASAAPETVEAVEVNHEPERAH 269 + + + D AA E + AP D V + E SA A + ++ P H Sbjct: 253 EQDENQEDTGDDQVAASSEEDLPSIAPHDAVGS--EPSADDGARDDQVEPAISSSPNEDH 310 Query: 270 EEQIEENAAHADDAPHVASDDVHVAADEQAVGEYGALAEVVAPETGPGDEAG-EDDEEDD 328 + + H D PH +++ H GDE ED +DD Sbjct: 311 ALGVHASGDHDHDEPH--AEEFH------------------------GDEVRVEDRADDD 344 Query: 329 GEEGEEEDVVESVGGDDVLEEVPERPFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAA 388 G++ EEE+ VESVGGDD LEEVPER FRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAA Sbjct: 345 GDDDEEEEQVESVGGDDALEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAA 404 Query: 389 LTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAS 448 LTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMG+ILRTAGA+ Sbjct: 405 LTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGAA 464 Query: 449 RSKPEIKRDFEYLIRMWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGE 508 R+KPEIKRDFEYLIRMWETVRD+TL+SQAPTLVYEEGSLIKRSLRDLY+KEIDEI VAGE Sbjct: 465 RTKPEIKRDFEYLIRMWETVRDMTLRSQAPTLVYEEGSLIKRSLRDLYSKEIDEILVAGE 524 Query: 509 AGYREARDFMKMLMPANVRAVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQ 568 AGY EAR FMKMLMP+N RAVKQYRD QPLFSRMGVESQLDAMF PTVQLRSGGYIVINQ Sbjct: 525 AGYHEARGFMKMLMPSNARAVKQYRDCQPLFSRMGVESQLDAMFLPTVQLRSGGYIVINQ 584 Query: 569 TEALVSIDVNSGRATREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRN 628 TEALVSIDVNSGR+TREHHI+DTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKR+ Sbjct: 585 TEALVSIDVNSGRSTREHHIKDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRS 644 Query: 629 NRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPQCGGSGHVRS 688 NRAVERKLS+CLR DRARIQVGRISHFGLLEMSRQRIRAS+LESSTEPCPQCGGSGHVRS Sbjct: 645 NRAVERKLSECLRHDRARIQVGRISHFGLLEMSRQRIRASMLESSTEPCPQCGGSGHVRS 704 Query: 689 VSSVALQLLRGIEEILMKGATHNLVVRTRTDVALYVLNHKRGHLRDLEDSFRVSLSIVAD 748 V SVALQLLR +EE+LMKGATHNL+VRTR +VALYVLN KR HLR LE SFRV LS+VAD Sbjct: 705 VPSVALQLLRSLEEVLMKGATHNLIVRTRINVALYVLNQKREHLRALEHSFRVGLSVVAD 764 Query: 749 ATVHGQQSYI----------------XAAQAAAAPAQAEEADDEEELFEYEAEIETDETE 792 + GQQS++ A Q P QAE+ D+E + E E E D+ E Sbjct: 765 PAIAGQQSFVIDRGEQVHTLEAAKALLATQLVTYPPQAEDVQDDEPTLDTETETEADDAE 824 Query: 793 GLADERAAGDESG 805 DE+A G+ G Sbjct: 825 VRVDEQAGGETEG 837