BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0108.0005.p (348 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770941.1| oxidoreductase protein [Bradyrhizobium japonicu... 435 e-120 ref|YP_001240725.1| putative D-amino-acid dehydrogenase [Bradyrh... 323 3e-86 ref|YP_001524939.1| D-amino-acid dehydrogenase [Azorhizobium cau... 316 4e-84 ref|YP_001206523.1| putative D-amino-acid dehydrogenase (DadA-li... 316 4e-84 ref|YP_003453130.1| D-amino-acid dehydrogenase [Azospirillum sp.... 308 7e-82 >ref|NP_770941.1| oxidoreductase protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49566.1| bll4301 [Bradyrhizobium japonicum USDA 110] Length = 410 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 215/280 (76%), Positives = 241/280 (86%) Query: 1 MQSAIVLGGGMVGVSTALHLQRRGWSVTLVDRKEPGRETSYGNAGIIQSEAVRPYPMPRD 60 MQSAIVLGGGM+GVS ALHL++RGW+VTLVDR+EPGRETSYGNAG+IQ+EAVRPYPMPRD Sbjct: 1 MQSAIVLGGGMIGVSAALHLRQRGWTVTLVDRREPGRETSYGNAGMIQAEAVRPYPMPRD 60 Query: 61 PATLARIAMGRTNDVRYRLASLPQHAGPLLRYWWNSTPERHREATLAWARLIAYATAEHD 120 A+L +IA GRTNDVRY L+SL H PLLRYWW+S P+RHREA AWARLIAYATAEHD Sbjct: 61 LASLLKIATGRTNDVRYSLSSLHLHIEPLLRYWWHSAPKRHREAIDAWARLIAYATAEHD 120 Query: 121 TLIRDAHADNLIRRAGYRLLHRDPAALEQAIAIAEENQRDFGVTFRVLDGRELAKAEPLL 180 LIR+AHADNLIRRAGYR L+RD AAL+ +I AEE+Q +FGV FRVL G ELAKAEP+L Sbjct: 121 ILIREAHADNLIRRAGYRALYRDAAALDLSIKAAEEDQHEFGVNFRVLSGSELAKAEPVL 180 Query: 181 RDDLPGAIHWLGPWTVSDPGGLVSAYAGLFERLGGTLLRGDAQTLTETTSGWSVDTASGR 240 RDDLPGAIHWL WTVSDPG LV+AYA LFERLGG ++ GDAQ+L +T +GWSVDT GR Sbjct: 181 RDDLPGAIHWLDTWTVSDPGALVTAYAELFERLGGRIVLGDAQSLQQTAAGWSVDTDQGR 240 Query: 241 IDAAHVVVTLGPWSPQLLRKFGYRIPLVRKRGYHMXPAAG 280 IDAA VVTLGPWSP LL KFGYRIPLVRKRGYHM + G Sbjct: 241 IDAATAVVTLGPWSPDLLYKFGYRIPLVRKRGYHMHYSGG 280 >ref|YP_001240725.1| putative D-amino-acid dehydrogenase [Bradyrhizobium sp. BTAi1] gb|ABQ36819.1| putative D-amino-acid dehydrogenase [Bradyrhizobium sp. BTAi1] Length = 412 Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 174/274 (63%), Positives = 201/274 (73%) Query: 1 MQSAIVLGGGMVGVSTALHLQRRGWSVTLVDRKEPGRETSYGNAGIIQSEAVRPYPMPRD 60 M+SAIVLGGGMVGV TALHLQ RGWSV LVDRKEPGRETSYGNAGIIQSEAVRPY MP D Sbjct: 1 MRSAIVLGGGMVGVGTALHLQSRGWSVALVDRKEPGRETSYGNAGIIQSEAVRPYAMPYD 60 Query: 61 PATLARIAMGRTNDVRYRLASLPQHAGPLLRYWWNSTPERHREATLAWARLIAYATAEHD 120 A + IA+ RTNDV Y L +LP H PLL+YWWNS P RH T +A+LIA A EH+ Sbjct: 61 LAGVLDIALARTNDVHYELTALPYHMRPLLQYWWNSFPARHEVLTRTYAQLIARAAPEHE 120 Query: 121 TLIRDAHADNLIRRAGYRLLHRDPAALEQAIAIAEENQRDFGVTFRVLDGRELAKAEPLL 180 LI A A NL+RR G+R+LHR+ A ++ + AE FGV F+VL ELAKAEP L Sbjct: 121 PLITAAGAGNLVRRDGFRVLHRNQAQFDKEVKDAEAVGTAFGVKFKVLSASELAKAEPGL 180 Query: 181 RDDLPGAIHWLGPWTVSDPGGLVSAYAGLFERLGGTLLRGDAQTLTETTSGWSVDTASGR 240 D G +HW PWTVSDPG LV++YA LF R GG L+RGDA TL + SGWSV + GR Sbjct: 181 NDSGIGGLHWQEPWTVSDPGSLVTSYAELFVRRGGKLVRGDATTLAQQGSGWSVISDEGR 240 Query: 241 IDAAHVVVTLGPWSPQLLRKFGYRIPLVRKRGYH 274 I+A VV+LGPWSP L++FGY IP+VRKRGYH Sbjct: 241 IEAEAAVVSLGPWSPTFLQRFGYDIPMVRKRGYH 274 >ref|YP_001524939.1| D-amino-acid dehydrogenase [Azorhizobium caulinodans ORS 571] dbj|BAF88021.1| D-amino-acid dehydrogenase [Azorhizobium caulinodans ORS 571] Length = 418 Score = 316 bits (809), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 167/276 (60%), Positives = 192/276 (69%), Gaps = 2/276 (0%) Query: 1 MQSAIVLGGGMVGVSTALHLQRRGWSVTLVDRKEPGRETSYGNAGIIQSEAVRPYPMPRD 60 M++ IVLGGGMVGVSTALHL+RR W V LVDR+ PG ETSYGNAGIIQSEAV P+ MPRD Sbjct: 1 MKTVIVLGGGMVGVSTALHLRRRNWDVVLVDRRAPGLETSYGNAGIIQSEAVEPFAMPRD 60 Query: 61 PATLARIAMGRTNDVRYRLASLPQHAGPLLRYWWNSTPERHREATLAWARLIAYATAEHD 120 +L IA GRTNDV + SLPQH GPLLRYWWNS RHR WA LIA ATA H Sbjct: 61 LRSLFDIATGRTNDVHFHWGSLPQHVGPLLRYWWNSEGGRHRRIAAGWAALIAQATASHQ 120 Query: 121 TLIRD--AHADNLIRRAGYRLLHRDPAALEQAIAIAEENQRDFGVTFRVLDGRELAKAEP 178 I + A AD L+RR GYR +R+PAA A+A AE + ++GVTF + +LA AEP Sbjct: 121 GFIGEIGAEADALVRRQGYRTFYRNPAAFADAVATAERLRAEYGVTFAAMTPAQLASAEP 180 Query: 179 LLRDDLPGAIHWLGPWTVSDPGGLVSAYAGLFERLGGTLLRGDAQTLTETTSGWSVDTAS 238 LR GAIHWL PW+V DPG LVSAYA LF GG G A+TL T GW VDTA Sbjct: 181 ALRQTGAGAIHWLAPWSVRDPGALVSAYAKLFSPNGGACRVGSAETLARTAQGWRVDTAD 240 Query: 239 GRIDAAHVVVTLGPWSPQLLRKFGYRIPLVRKRGYH 274 G ++A HVV+ LGPWSP LL ++G P+VRKRGYH Sbjct: 241 GPLEAEHVVLALGPWSPALLARYGLTFPMVRKRGYH 276 >ref|YP_001206523.1| putative D-amino-acid dehydrogenase (DadA-like) [Bradyrhizobium sp. ORS 278] emb|CAL78303.1| putative D-amino-acid dehydrogenase (DadA-like) [Bradyrhizobium sp. ORS 278] Length = 412 Score = 316 bits (809), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 171/274 (62%), Positives = 201/274 (73%) Query: 1 MQSAIVLGGGMVGVSTALHLQRRGWSVTLVDRKEPGRETSYGNAGIIQSEAVRPYPMPRD 60 M+SAIVLGGGMVGV TALHLQ RGWSV LVDR+EPGRETSYGNAGIIQSEAVRPY MP D Sbjct: 1 MRSAIVLGGGMVGVGTALHLQIRGWSVALVDRREPGRETSYGNAGIIQSEAVRPYAMPHD 60 Query: 61 PATLARIAMGRTNDVRYRLASLPQHAGPLLRYWWNSTPERHREATLAWARLIAYATAEHD 120 A + IA+ RTNDV Y LA LP H PLL+YWWNS P RH T +A+LIA A EH+ Sbjct: 61 IAGVLDIALARTNDVHYTLAGLPYHVRPLLQYWWNSFPARHEILTRTYAQLIARAAPEHE 120 Query: 121 TLIRDAHADNLIRRAGYRLLHRDPAALEQAIAIAEENQRDFGVTFRVLDGRELAKAEPLL 180 LI+ A A NL+RR G+R+LHR A ++ AE + +GV +R+L ELAKAEP L Sbjct: 121 PLIQAAGAGNLVRRDGFRVLHRTQAQFDKEAKEAEAVGKAYGVKYRLLSASELAKAEPGL 180 Query: 181 RDDLPGAIHWLGPWTVSDPGGLVSAYAGLFERLGGTLLRGDAQTLTETTSGWSVDTASGR 240 D G +HW PWTVSDPG LV++YA LF + GG LL GDA TL++ SGW+V T GR Sbjct: 181 TDSGIGGLHWQEPWTVSDPGSLVASYADLFVKRGGRLLTGDATTLSQAGSGWAVTTQEGR 240 Query: 241 IDAAHVVVTLGPWSPQLLRKFGYRIPLVRKRGYH 274 I+A VVV LGPWSP+ L++FG IP+VRKRGYH Sbjct: 241 IEAEAVVVALGPWSPEFLKRFGMDIPMVRKRGYH 274 >ref|YP_003453130.1| D-amino-acid dehydrogenase [Azospirillum sp. B510] dbj|BAI76586.1| D-amino-acid dehydrogenase [Azospirillum sp. B510] Length = 419 Score = 308 bits (790), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 160/284 (56%), Positives = 198/284 (69%), Gaps = 10/284 (3%) Query: 1 MQSAIVLGGGMVGVSTALHLQRRGWSVTLVDRKEPGRETSYGNAGIIQSEAVRPYPMPRD 60 M+ I+LG GMVG++TAL L++RGW+VT+VDR+ PG ETSYGNAGIIQSEAV PYPMPRD Sbjct: 1 MKQVIILGAGMVGIATALQLRKRGWAVTVVDRRSPGEETSYGNAGIIQSEAVSPYPMPRD 60 Query: 61 PATLARIAMGRTNDVRYRLASLPQHAGPLLRYWWNSTPERHREATLAWARLIAYATAEHD 120 TLA +A GRTNDV Y ++P HA L RYWW+S RH + ++ARLI ATA H+ Sbjct: 61 IGTLAAVATGRTNDVHYHAMAMPDHAEALARYWWHSAESRHARISDSYARLIIQATATHE 120 Query: 121 TLIRDAHA---------DNLIRRAGYRLLHRDPAALEQAIAIAEENQRDFGVTFRVLDGR 171 L+ D A D+L+RR GY L R ++A+A AEEN++ +GV F+ L Sbjct: 121 ELMGDCRADGGPAEAGLDDLVRRDGYHALFRRQNLFDKALAAAEENRKRWGVRFKALTPG 180 Query: 172 ELAKAEPLLRDDLPGAIHWLGPWTVSDPGGLVSAYAGLFERLGGTLLRGDAQTLTET-TS 230 ELA+AEP L+ GAIHWL PWTVSDPG LV+AY F GG LL GDA++L T Sbjct: 181 ELARAEPALKQTGVGAIHWLDPWTVSDPGALVAAYGRGFVAAGGRLLEGDARSLAATPQG 240 Query: 231 GWSVDTASGRIDAAHVVVTLGPWSPQLLRKFGYRIPLVRKRGYH 274 GW+V+T GR++A VVV LGPWSP+LLR FG R P+VRKRGYH Sbjct: 241 GWAVNTVDGRLEADAVVVALGPWSPELLRPFGLRFPMVRKRGYH 284