BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0089.p (405 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773931.1| transcriptional regulator [Bradyrhizobium japon... 367 1e-99 ref|YP_001834147.1| Fis family GAF modulated sigma54 specific tr... 154 3e-35 ref|YP_003595094.1| Fis family transcriptional regulator [Caulob... 147 2e-33 ref|NP_422373.1| transcriptional regulator, internal deletion [C... 140 4e-31 ref|YP_001368830.1| Fis family transcriptional regulator [Ochrob... 138 2e-30 >ref|NP_773931.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC52556.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 627 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 181/267 (67%), Positives = 209/267 (78%), Gaps = 21/267 (7%) Query: 1 MANLSASNHVARVLSAANQVAGVDTETRIAASWRRCLVNHNLDPARRGPPQTLTEAEVRH 60 MA+LSASNHVARVLS AN VA VD +RIA SWRRCL++H LDPAR+GPPQTLTEAE+RH Sbjct: 6 MASLSASNHVARVLSVANHVADVDASSRIANSWRRCLISHKLDPARQGPPQTLTEAEIRH 65 Query: 61 LAEPMEDLIQVAIPELEDLARVLHDSGYCVNLADPNATMLVSRLPGGDYARMFLEWKIYT 120 +AEPME+ I++A PEL+DLA VL D+GYCVNLAD NATML SRLPG A+MFL+WKIYT Sbjct: 66 VAEPMEETIRLATPELDDLAGVLRDAGYCVNLADVNATMLFSRLPGEADAKMFLDWKIYT 125 Query: 121 GSNFAETFEGTNGLGTALAEQRPILVHGDEHFREQWHMFTCAVSPLFDHAGRLAGAVNIT 180 GSNFAETFEGTNGLGTALAEQ+PILVH DEHFR QWHMF+CAV+PLFD AGRLAGA+NIT Sbjct: 126 GSNFAETFEGTNGLGTALAEQKPILVHRDEHFRAQWHMFSCAVAPLFDQAGRLAGAINIT 185 Query: 181 SCRSDLGRSAHELALAVTTEATRRIEQSFFRRRYR---------------------KKKK 219 SCR DL R+AH+LALAVT EATRR+E + FR +R ++ Sbjct: 186 SCREDLERAAHQLALAVTMEATRRMEGAIFRGHFRNAWIATVPGDGGSGLLAYDDDRRIV 245 Query: 220 TPCRTARAAFGLSDAMIEDGIDLSHLI 246 CR+ARA GL+D MI GIDLS + Sbjct: 246 GACRSARALLGLTDGMIASGIDLSRYV 272 >ref|YP_001834147.1| Fis family GAF modulated sigma54 specific transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gb|ACB96658.1| GAF modulated sigma54 specific transcriptional regulator, Fis family [Beijerinckia indica subsp. indica ATCC 9039] Length = 624 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 144/285 (50%), Gaps = 32/285 (11%) Query: 4 LSASNHVARVLSAANQVAGVDTE-----TRIAASWRRCLVNHNLDPARRGPPQTLTEAEV 58 ++A+ H R+ +A+ G +T + I ASWRRCL H LDP R+ + L+ E+ Sbjct: 10 VAATAHAERIFTAS--FGGAETGDGPVGSLIIASWRRCLDRHKLDPERQAETRVLSRGEL 67 Query: 59 RHLAEPMEDLIQVAIPELEDLARVLHDSGYCVNLADPNATMLVSRLPGGDYARMFLEWKI 118 R EP++ L+ ++ P L+DL R + D GY V L D N L +R G+ R F +W + Sbjct: 68 REAREPLDALLSLSTPLLDDLYRQVADLGYVVMLTDGNGITLNAR--AGNDERAFRKWGL 125 Query: 119 YTGSNFAETFEGTNGLGTALAEQRPILVHGDEHFREQWHMFTCAVSPLFDHAGRLAGAVN 178 +TGS ++E EGTNG+G L EQRP+ VH EHFR + TC V+PLF+ G + G ++ Sbjct: 126 WTGSVWSEGLEGTNGVGLCLTEQRPVTVHRGEHFRSRHAGLTCTVAPLFNADGTIIGCLD 185 Query: 179 ITSCRSDLGRSAHELALAVTTEATRRIEQSFFRRRYR----------------------K 216 I++ ++ A TT A IE FR YR + Sbjct: 186 ISAFNQEIDSRIVGFAQRATTLAAGWIEAVCFRHAYRSCWIVSLGESIEGKALLAFDEDR 245 Query: 217 KKKTPCRTARAAFGLSDAMIEDGIDLSHLIXAAPTARRGAAAIWR 261 + K R AR GL +A+I+ GI + P+A G A + R Sbjct: 246 RLKGASRLARQQLGLDEALIDQGIGIVR-DDGGPSAGTGKAPLLR 289 >ref|YP_003595094.1| Fis family transcriptional regulator [Caulobacter segnis ATCC 21756] gb|ADG12476.1| transcriptional regulator, Fis family [Caulobacter segnis ATCC 21756] Length = 316 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/210 (42%), Positives = 120/210 (57%), Gaps = 5/210 (2%) Query: 6 ASNHVARVLSAANQVAGVD-TETRIAASWRRCLVNHNLDPARRGPPQTLTEAEVRHLAEP 64 A H RVLS GV + IAASWRRCL HNLDP R PP+TLT AE+R Sbjct: 2 AEGHAERVLSVLRD--GVAPALSPIAASWRRCLTQHNLDPENRRPPETLTGAELRFAQAR 59 Query: 65 MEDLIQVAIPELEDLARVLHDSGYCVNLADPNATMLVSRLPGGDYARMFLEWKIYTGSNF 124 M L+ A L+ L + L D+G CV L D + + R D A +F W ++ G+ + Sbjct: 60 MGPLLAAAQDNLDALFQALGDAGCCVLLTDADGVPVDRRGAESDDA-VFRRWGLWEGAVW 118 Query: 125 AETFEGTNGLGTALAEQRPILVHGDEHFREQWHMFTCAVSPLFDHAGRLAGAVNITSCRS 184 +E EGTNG+GT L EQR + VH D+HF + +C V+PLFD GRLAGA++++SCR Sbjct: 119 SEAREGTNGIGTCLTEQRVLTVHRDQHFHTRNIGLSCTVAPLFDPTGRLAGALDVSSCRP 178 Query: 185 DLGRSAHELALAVTTEATRRIEQSFFRRRY 214 + + + + T+A RRIE FR + Sbjct: 179 GI-EALTGMVERIVTDAARRIEVKAFREAF 207 >ref|NP_422373.1| transcriptional regulator, internal deletion [Caulobacter crescentus CB15] ref|YP_002519067.1| transcriptional regulator [Caulobacter crescentus NA1000] gb|AAK25541.1| transcriptional regulator, internal deletion [Caulobacter crescentus CB15] gb|ACL97159.1| transcriptional regulator [Caulobacter crescentus NA1000] Length = 314 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 115/207 (55%), Gaps = 6/207 (2%) Query: 8 NHVARVLSAANQVAGVDTETRIAASWRRCLVNHNLDPARRGPPQTLTEAEVRHLAEPMED 67 H RVLS A T +AASWRR L H LDP R PP+TL+ AE++ E M Sbjct: 5 GHAERVLSVLRDGAA----TPLAASWRRSLTLHQLDPENRKPPETLSGAELKAAQEQMGP 60 Query: 68 LIQVAIPELEDLARVLHDSGYCVNLADPNATMLVSRLPGGDYARMFLEWKIYTGSNFAET 127 L+ A L+ L + + D G CV L + + + R D +F W ++ G+ ++E Sbjct: 61 LLAAAQDNLDALFQAVGDGGCCVLLTNADGVPVDRRGVSADDP-VFRRWGLWNGAVWSEA 119 Query: 128 FEGTNGLGTALAEQRPILVHGDEHFREQWHMFTCAVSPLFDHAGRLAGAVNITSCRSDLG 187 EGTNG+GT LAEQR + +H D+HF + +C V+PLFD GR+AGA++++SCR L Sbjct: 120 REGTNGIGTCLAEQRVLTIHRDQHFHTRNIGLSCTVAPLFDPCGRIAGALDVSSCRPGL- 178 Query: 188 RSAHELALAVTTEATRRIEQSFFRRRY 214 S L T+A RRIE FR Y Sbjct: 179 DSLTGLVERAVTDAARRIEARAFREAY 205 >ref|YP_001368830.1| Fis family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gb|ABS13001.1| transcriptional regulator, Fis family [Ochrobactrum anthropi ATCC 49188] Length = 323 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 129/250 (51%), Gaps = 26/250 (10%) Query: 11 ARVLSAANQVAGVDTETRIAASWRRCLVNHNLDPARRGPPQTLTEAEVRHLAEPMEDLIQ 70 A ++ +A AG + + ASWRR H LDPA G +TL++ E R + +E L+ Sbjct: 10 ADLIQSAIMTAGGAARSALVASWRRSSELHGLDPAELGSVRTLSDGEFRTAHQRIERLVS 69 Query: 71 VAIPELEDLARVLHDSGYCVNLADPNATMLVSR-LPGGDYARMFLEWKIYTGSNFAETFE 129 +A ++ L + G CV LAD + R PG D F W ++TG+ ++E E Sbjct: 70 IAQASMDRLYLAVGGVGCCVLLADSEGVPVERRGAPGDD--DTFYRWGLWTGAVWSEQSE 127 Query: 130 GTNGLGTALAEQRPILVHGDEHFREQWHMFTCAVSPLFDHAGRLAGAVNITSCRSDLGRS 189 GTNG+GT + EQRP+ +H D+HF + +C V+P+ DH GRL A++++SCR+DL + Sbjct: 128 GTNGIGTCIVEQRPLTIHRDQHFHTRNIGLSCTVAPIHDHQGRLMAALDVSSCRADLTEA 187 Query: 190 AHELALAVTTEATRRIEQSFFRRRYRKKKK----TPCRT-------------------AR 226 +L +A RRIE FR+ + + + +P RT AR Sbjct: 188 FAQLISVAVIDAARRIEAENFRQAFPEARIMLAPSPDRTGGALIAVDKDDLVIGATRAAR 247 Query: 227 AAFGLSDAMI 236 A GL DA I Sbjct: 248 LAMGLDDAAI 257