BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0081.p (195 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001208543.1| PadR family transcriptional regulator [Brady... 317 5e-85 ref|YP_779608.1| PadR-like family transcriptional regulator [Rho... 317 6e-85 ref|YP_001236981.1| PadR family transcriptional regulator [Brady... 314 6e-84 ref|NP_767796.1| transcriptional regulator [Bradyrhizobium japon... 301 4e-80 ref|YP_003060854.1| PadR family transcriptional regulator [Hirsc... 179 2e-43 >ref|YP_001208543.1| PadR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL80328.1| putative transcriptional regulator (PadR-like family) [Bradyrhizobium sp. ORS 278] Length = 195 Score = 317 bits (812), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 148/195 (75%), Positives = 168/195 (86%) Query: 1 LALGDAILACLTERPMTGYELAKTFDASIGFFWKADHQQIYRELSRLRDKGHVQGREVVQ 60 +ALGDAILACLTE PMTGYELAKTFD+SIGFFWK DHQQIYRELSRLRD+G++QGREVVQ Sbjct: 1 MALGDAILACLTEHPMTGYELAKTFDSSIGFFWKTDHQQIYRELSRLRDRGYIQGREVVQ 60 Query: 61 SGKPNKLVYTLTAEGRAALKHWAARPSVPPSIKDDLLVRLYALDCVDIEPLRTDLMARLE 120 +GKPNKLVYTLT EGRAA + WAARPS P S KDDLLVRLYAL DI P+R DLMAR+E Sbjct: 61 TGKPNKLVYTLTPEGRAAFRSWAARPSTPASTKDDLLVRLYALGAADIAPIRADLMARME 120 Query: 121 HHRDRYERYERLLNKRFPDGTAPPADVGKMLSLRLGMRHERMVVEWCEEALDALSAMSGR 180 HHRDR ERY+R+L K + DG+ PAD+GK+L+LRLG+RHERMV EWCEEA+ ALSA+SG Sbjct: 121 HHRDRAERYDRILKKHYADGSVAPADMGKLLNLRLGLRHERMVAEWCEEAITALSALSGT 180 Query: 181 GNVLPLDDGKRESNG 195 G+V PLD RES G Sbjct: 181 GSVRPLDASSRESAG 195 >ref|YP_779608.1| PadR-like family transcriptional regulator [Rhodopseudomonas palustris BisA53] gb|ABJ04628.1| transcriptional regulator, PadR family [Rhodopseudomonas palustris BisA53] Length = 195 Score = 317 bits (812), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 151/194 (77%), Positives = 170/194 (87%) Query: 1 LALGDAILACLTERPMTGYELAKTFDASIGFFWKADHQQIYRELSRLRDKGHVQGREVVQ 60 +ALGDAILACLTE PMTGYELAKTFD+SIGFFWKADHQQIYRELSRLRD+GHV G+EVVQ Sbjct: 1 MALGDAILACLTECPMTGYELAKTFDSSIGFFWKADHQQIYRELSRLRDRGHVLGKEVVQ 60 Query: 61 SGKPNKLVYTLTAEGRAALKHWAARPSVPPSIKDDLLVRLYALDCVDIEPLRTDLMARLE 120 SGKPNKLVYTLT EGRAAL+ WAARPS P IKD+LLVRLYALD +DI+PLR DLMAR+E Sbjct: 61 SGKPNKLVYTLTPEGRAALRSWAARPSSPAPIKDELLVRLYALDSIDIDPLRDDLMARME 120 Query: 121 HHRDRYERYERLLNKRFPDGTAPPADVGKMLSLRLGMRHERMVVEWCEEALDALSAMSGR 180 HHRDR RYER+LNKRFP TAPPAD GK+L LR+G+RHER V EWCEEAL+ALSA+S R Sbjct: 121 HHRDRAARYERILNKRFPQNTAPPADTGKLLLLRMGLRHERSVTEWCEEALEALSAVSHR 180 Query: 181 GNVLPLDDGKRESN 194 NV P++ + + N Sbjct: 181 TNVAPIEPSQCDDN 194 >ref|YP_001236981.1| PadR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ33075.1| transcriptional regulator, PadR family [Bradyrhizobium sp. BTAi1] Length = 195 Score = 314 bits (804), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 147/195 (75%), Positives = 168/195 (86%) Query: 1 LALGDAILACLTERPMTGYELAKTFDASIGFFWKADHQQIYRELSRLRDKGHVQGREVVQ 60 +ALGDAILACLTE PMTGYELAKTFD+SIGFFWK DHQQIYRELSRLRD+G++QGREVVQ Sbjct: 1 MALGDAILACLTEHPMTGYELAKTFDSSIGFFWKTDHQQIYRELSRLRDRGYIQGREVVQ 60 Query: 61 SGKPNKLVYTLTAEGRAALKHWAARPSVPPSIKDDLLVRLYALDCVDIEPLRTDLMARLE 120 +GKPNKLVYTLT EGRAA + WAARPS P S+KDDLLVRLYAL DI P+R DLMARLE Sbjct: 61 TGKPNKLVYTLTPEGRAAFRSWAARPSTPASVKDDLLVRLYALGAADIAPIRADLMARLE 120 Query: 121 HHRDRYERYERLLNKRFPDGTAPPADVGKMLSLRLGMRHERMVVEWCEEALDALSAMSGR 180 HHRDR ERY+R+L K + DG+ PAD+GK+L+LRLG+RHERMV EWCEEA+ ALSA+S Sbjct: 121 HHRDRAERYDRILKKHYADGSVAPADMGKLLNLRLGLRHERMVAEWCEEAITALSAISNS 180 Query: 181 GNVLPLDDGKRESNG 195 G+V PLD RE+ G Sbjct: 181 GSVRPLDPPSRETAG 195 >ref|NP_767796.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC46421.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 196 Score = 301 bits (770), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 152/196 (77%), Positives = 173/196 (88%), Gaps = 1/196 (0%) Query: 1 LALGDAILACLTERPMTGYELAKTFDASIGFFWKADHQQIYRELSRLRDKGHVQGREVVQ 60 +ALGDAILACLTERPMTGYELAKTFD+SIGFFWKADHQQIYRELS+LRD+G++QGREVVQ Sbjct: 1 MALGDAILACLTERPMTGYELAKTFDSSIGFFWKADHQQIYRELSKLRDRGYIQGREVVQ 60 Query: 61 SGKPNKLVYTLTAEGRAALKHWAARPSVPPSIKDDLLVRLYALDCVDIEPLRTDLMARLE 120 +GKPNKLVYTLT EGR AL+HWAARPS P S KDDLLVRL+ALD +DIEPLRTDLMARLE Sbjct: 61 TGKPNKLVYTLTPEGRTALRHWAARPSTPASTKDDLLVRLHALDSIDIEPLRTDLMARLE 120 Query: 121 HHRDRYERYERLLNKRFPDGTAP-PADVGKMLSLRLGMRHERMVVEWCEEALDALSAMSG 179 HHRDR+ YER+L KRFP GTA D+G +L LRLG RHE+MV ++CEE L+ALS MSG Sbjct: 121 HHRDRHANYERILKKRFPGGTAEGRLDLGNLLLLRLGARHEQMVADFCEETLEALSTMSG 180 Query: 180 RGNVLPLDDGKRESNG 195 +G V+PL+DGKRE G Sbjct: 181 KGTVVPLEDGKREGKG 196 >ref|YP_003060854.1| PadR family transcriptional regulator [Hirschia baltica ATCC 49814] gb|ACT60157.1| transcriptional regulator, PadR-like family [Hirschia baltica ATCC 49814] Length = 180 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 84/178 (47%), Positives = 119/178 (66%) Query: 1 LALGDAILACLTERPMTGYELAKTFDASIGFFWKADHQQIYRELSRLRDKGHVQGREVVQ 60 +AL +AIL CL+E+ M+GY+LA+ FD SIGFFW+A H QIYREL +L++K V E +Q Sbjct: 1 MALAEAILVCLSEKEMSGYDLARQFDTSIGFFWRATHPQIYRELRKLKEKNFVISEEFIQ 60 Query: 61 SGKPNKLVYTLTAEGRAALKHWAARPSVPPSIKDDLLVRLYALDCVDIEPLRTDLMARLE 120 SG+PN+ VY +T G +A++ W+ P PPSIKDDLLVRLY++D +D L+ L R + Sbjct: 61 SGRPNRTVYRITDAGLSAIEKWSRLPVDPPSIKDDLLVRLYSIDAIDNNALKEQLEIRRD 120 Query: 121 HHRDRYERYERLLNKRFPDGTAPPADVGKMLSLRLGMRHERMVVEWCEEALDALSAMS 178 H R RY+ + ++ + GKM +L LG+R+E+ VEWCEEA++ L S Sbjct: 121 QHMQRLIRYKYIKTHQYSEPNLTRNQKGKMEALALGIRYEQTWVEWCEEAINRLFTES 178