BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0067.p (474 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236993.1| putative peptidase TldD [Bradyrhizobium sp. ... 888 0.0 ref|YP_001208528.1| putative peptidase TldD [Bradyrhizobium sp. ... 885 0.0 ref|YP_575613.1| peptidase U62, modulator of DNA gyrase [Nitroba... 878 0.0 ref|ZP_01045187.1| peptidase U62, modulator of DNA gyrase [Nitro... 875 0.0 ref|YP_316841.1| peptidase U62, modulator of DNA gyrase [Nitroba... 869 0.0 >ref|YP_001236993.1| putative peptidase TldD [Bradyrhizobium sp. BTAi1] gb|ABQ33087.1| microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 [Bradyrhizobium sp. BTAi1] Length = 475 Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/474 (90%), Positives = 457/474 (96%) Query: 1 MTNPATTSLLDRANLDRDAVRREVARGLEGADDGELFLEFGQTEALVFDNGRLKQATYDT 60 MTNPATTSLLDRA+LDRDAVR E+ARGL GADDGELFLE+ QTEAL FDNGRLKQATYDT Sbjct: 1 MTNPATTSLLDRASLDRDAVRSEIARGLAGADDGELFLEYSQTEALTFDNGRLKQATYDT 60 Query: 61 SQGFGLRAVKDDAVGYAHSSDVSIPALIRAADAVAAVRGGYAGTFAAAPAHTNIKLYGDE 120 SQGFGLRAVKDDAVGYAHSSDVS+PAL+RAADAV+AVRGGY+G FA+ P HTN++LYGD+ Sbjct: 61 SQGFGLRAVKDDAVGYAHSSDVSLPALMRAADAVSAVRGGYSGNFASPPPHTNVRLYGDD 120 Query: 121 NPLDGPAFEAKVKLLGEIDAYVRDKDPRVRQVSASLTATWQVVEILRPDGESYRDIRPLV 180 NPLD P FE+KVKLLGEIDAY+RDKDPRVRQV+ SL ATWQVVEI+RPDGESYRDIRPLV Sbjct: 121 NPLDAPGFESKVKLLGEIDAYLRDKDPRVRQVTVSLGATWQVVEIIRPDGESYRDIRPLV 180 Query: 181 RVNISVVAGQGDRQESGSKGYGGREGYARFIETKAWRDAADGALREALVNLESVPAPAGE 240 RVN+SVVAGQGDRQESGSKGYGGRE YARFIETKAWR+AADGALREALVNLESVPAPAGE Sbjct: 181 RVNVSVVAGQGDRQESGSKGYGGREAYARFIETKAWREAADGALREALVNLESVPAPAGE 240 Query: 241 MDVVLGAGWPGVMLHEAVGHGLEGDFNRKQTSAFAGLMGQQVAAKGVTVVDDGTMASRRG 300 MDVVLGAGWPGVMLHEAVGHGLEGDFNRK+TSAFAGLMG+ VAAKGVTVVDDGTM+SRRG Sbjct: 241 MDVVLGAGWPGVMLHEAVGHGLEGDFNRKKTSAFAGLMGKPVAAKGVTVVDDGTMSSRRG 300 Query: 301 SLSIDDEGTPTNRTVLIEDGILVGYMQDRQNARLMGMKPTGNGRRQSYAHVPMPRMTNTY 360 SLSIDDEGTPT+RTVLIEDGILVGYMQDRQNARLM M PTGNGRRQ YAHVPMPRMTNTY Sbjct: 301 SLSIDDEGTPTSRTVLIEDGILVGYMQDRQNARLMNMAPTGNGRRQGYAHVPMPRMTNTY 360 Query: 361 MLSGDRDPAEIIASVKNGMYAANFGGGQVDITSGKYVFQCTEAYKIENGKLGAPVKGAML 420 ML+GDRDPAEIIASVKNG+YA NFGGGQVDITSGKYVFQCTEAY+IENGK+GAPVKGAML Sbjct: 361 MLAGDRDPAEIIASVKNGIYAVNFGGGQVDITSGKYVFQCTEAYRIENGKVGAPVKGAML 420 Query: 421 IGNGPTDLHRITMIGNDLALDTGIGTCGKNGQGVPVGVGQPTLRMERITVGGTG 474 IGNGPTDL+RI+MIGNDL+LDTGIGTCGKNGQGVPVGVGQPTLRM+RITVGGTG Sbjct: 421 IGNGPTDLNRISMIGNDLSLDTGIGTCGKNGQGVPVGVGQPTLRMDRITVGGTG 474 >ref|YP_001208528.1| putative peptidase TldD [Bradyrhizobium sp. ORS 278] emb|CAL80313.1| putative peptidase TldD [Bradyrhizobium sp. ORS 278] Length = 474 Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/474 (90%), Positives = 455/474 (95%), Gaps = 1/474 (0%) Query: 1 MTNPATTSLLDRANLDRDAVRREVARGLEGADDGELFLEFGQTEALVFDNGRLKQATYDT 60 MT P TTSLL+RANLDRDAVR EVARGL GADDGELF E+ QTEAL FDNGRLKQATYDT Sbjct: 1 MTAP-TTSLLERANLDRDAVRSEVARGLAGADDGELFFEYSQTEALTFDNGRLKQATYDT 59 Query: 61 SQGFGLRAVKDDAVGYAHSSDVSIPALIRAADAVAAVRGGYAGTFAAAPAHTNIKLYGDE 120 SQGFGLRAVKDDAVGYAHSSDVS+PAL+RAADAV+AVRGGY+GTFA+AP HTN++LY D+ Sbjct: 60 SQGFGLRAVKDDAVGYAHSSDVSLPALMRAADAVSAVRGGYSGTFASAPPHTNVRLYADD 119 Query: 121 NPLDGPAFEAKVKLLGEIDAYVRDKDPRVRQVSASLTATWQVVEILRPDGESYRDIRPLV 180 NPLD P FE+KVKLLGEIDAY+RDKDPRVRQV+ SL ATWQVVEILRPDGESYRDIRPLV Sbjct: 120 NPLDAPGFESKVKLLGEIDAYLRDKDPRVRQVTVSLGATWQVVEILRPDGESYRDIRPLV 179 Query: 181 RVNISVVAGQGDRQESGSKGYGGREGYARFIETKAWRDAADGALREALVNLESVPAPAGE 240 RVN+SVVAGQGDRQESGSKGYGGRE YARFIETKAWR+AADGALREALVNLESVPAPAGE Sbjct: 180 RVNVSVVAGQGDRQESGSKGYGGREAYARFIETKAWREAADGALREALVNLESVPAPAGE 239 Query: 241 MDVVLGAGWPGVMLHEAVGHGLEGDFNRKQTSAFAGLMGQQVAAKGVTVVDDGTMASRRG 300 MDVVLGAGWPGVMLHEAVGHGLEGDFNRK+TSAFAGLMGQ VAAKGVTVVDDGTMASRRG Sbjct: 240 MDVVLGAGWPGVMLHEAVGHGLEGDFNRKKTSAFAGLMGQPVAAKGVTVVDDGTMASRRG 299 Query: 301 SLSIDDEGTPTNRTVLIEDGILVGYMQDRQNARLMGMKPTGNGRRQSYAHVPMPRMTNTY 360 SLSIDDEGTPT+RTVLIEDGILVGYMQDRQNARLM M PTGNGRRQ YAHVPMPRMTNTY Sbjct: 300 SLSIDDEGTPTSRTVLIEDGILVGYMQDRQNARLMNMAPTGNGRRQGYAHVPMPRMTNTY 359 Query: 361 MLSGDRDPAEIIASVKNGMYAANFGGGQVDITSGKYVFQCTEAYKIENGKLGAPVKGAML 420 ML+G+RDPAEIIASVKNG+YA NFGGGQVDITSGKYVFQCTEAYKIENGK+GAPVKGAML Sbjct: 360 MLAGERDPAEIIASVKNGIYAVNFGGGQVDITSGKYVFQCTEAYKIENGKVGAPVKGAML 419 Query: 421 IGNGPTDLHRITMIGNDLALDTGIGTCGKNGQGVPVGVGQPTLRMERITVGGTG 474 IGNGPTDL+RI+MIGNDLALDTGIGTCGKNGQGVPVGVGQPTLRM+RITVGGTG Sbjct: 420 IGNGPTDLNRISMIGNDLALDTGIGTCGKNGQGVPVGVGQPTLRMDRITVGGTG 473 >ref|YP_575613.1| peptidase U62, modulator of DNA gyrase [Nitrobacter hamburgensis X14] gb|ABE61153.1| microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 [Nitrobacter hamburgensis X14] Length = 475 Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/474 (89%), Positives = 454/474 (95%) Query: 1 MTNPATTSLLDRANLDRDAVRREVARGLEGADDGELFLEFGQTEALVFDNGRLKQATYDT 60 MT+PA TSLLDRA+LDRD+VR EVARGL+GADDGELFLE+ Q+EAL+FDNGRLKQATYDT Sbjct: 1 MTSPAATSLLDRADLDRDSVRDEVARGLKGADDGELFLEYSQSEALMFDNGRLKQATYDT 60 Query: 61 SQGFGLRAVKDDAVGYAHSSDVSIPALIRAADAVAAVRGGYAGTFAAAPAHTNIKLYGDE 120 SQGFGLRAVK DAVGYAHSSDVS+PALIRAADAV AVRGGY GTFAAAPAHTN++LY D+ Sbjct: 61 SQGFGLRAVKGDAVGYAHSSDVSLPALIRAADAVGAVRGGYQGTFAAAPAHTNVRLYVDD 120 Query: 121 NPLDGPAFEAKVKLLGEIDAYVRDKDPRVRQVSASLTATWQVVEILRPDGESYRDIRPLV 180 NPLDG FE KVKLL EIDAYVRDKDPRVRQVS SL ATWQVVEI+RPDGESYRDIRPLV Sbjct: 121 NPLDGLGFETKVKLLTEIDAYVRDKDPRVRQVSVSLGATWQVVEIMRPDGESYRDIRPLV 180 Query: 181 RVNISVVAGQGDRQESGSKGYGGREGYARFIETKAWRDAADGALREALVNLESVPAPAGE 240 RVNISVVAGQGDRQE+GS GYGGREGYARFIETKAWR AADGA+R+ALVNLESVPAPAGE Sbjct: 181 RVNISVVAGQGDRQETGSHGYGGREGYARFIETKAWRSAADGAIRQALVNLESVPAPAGE 240 Query: 241 MDVVLGAGWPGVMLHEAVGHGLEGDFNRKQTSAFAGLMGQQVAAKGVTVVDDGTMASRRG 300 MDVVLG GWPGVMLHEAVGHGLEGDFNRK+TSAFAGLMGQQVAA+GVTVVDDGT+++RRG Sbjct: 241 MDVVLGPGWPGVMLHEAVGHGLEGDFNRKKTSAFAGLMGQQVAARGVTVVDDGTISARRG 300 Query: 301 SLSIDDEGTPTNRTVLIEDGILVGYMQDRQNARLMGMKPTGNGRRQSYAHVPMPRMTNTY 360 SLSIDDEGTPT RTVLIEDG+L+GYMQDRQNARLMGMKPTGNGRRQ YAHVPMPRMTNTY Sbjct: 301 SLSIDDEGTPTGRTVLIEDGVLIGYMQDRQNARLMGMKPTGNGRRQDYAHVPMPRMTNTY 360 Query: 361 MLSGDRDPAEIIASVKNGMYAANFGGGQVDITSGKYVFQCTEAYKIENGKLGAPVKGAML 420 M +GDRDPAEI+ASVKNG+YAANFGGGQVDITSGKYVFQCTEAYKIENGK+GAP+KGAML Sbjct: 361 MPAGDRDPAEILASVKNGIYAANFGGGQVDITSGKYVFQCTEAYKIENGKIGAPLKGAML 420 Query: 421 IGNGPTDLHRITMIGNDLALDTGIGTCGKNGQGVPVGVGQPTLRMERITVGGTG 474 IGNGPTDLHRITMIGND+ALD GIGTCGKNGQGVPVGVGQPTLRMERITVGGTG Sbjct: 421 IGNGPTDLHRITMIGNDIALDDGIGTCGKNGQGVPVGVGQPTLRMERITVGGTG 474 >ref|ZP_01045187.1| peptidase U62, modulator of DNA gyrase [Nitrobacter sp. Nb-311A] gb|EAQ37192.1| peptidase U62, modulator of DNA gyrase [Nitrobacter sp. Nb-311A] Length = 475 Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/474 (88%), Positives = 454/474 (95%) Query: 1 MTNPATTSLLDRANLDRDAVRREVARGLEGADDGELFLEFGQTEALVFDNGRLKQATYDT 60 MT+P TSLLDRANLDR +VR EVARGL+GADDGELFLE+ Q+EAL+FDNGRLKQATYDT Sbjct: 1 MTSPTATSLLDRANLDRTSVRNEVARGLKGADDGELFLEYNQSEALMFDNGRLKQATYDT 60 Query: 61 SQGFGLRAVKDDAVGYAHSSDVSIPALIRAADAVAAVRGGYAGTFAAAPAHTNIKLYGDE 120 SQGFGLRAVKDDAVGYAHSSDVS+PALIRAADAV AVRGGY GTFAAAP HTN++LYGD+ Sbjct: 61 SQGFGLRAVKDDAVGYAHSSDVSLPALIRAADAVGAVRGGYQGTFAAAPGHTNVRLYGDD 120 Query: 121 NPLDGPAFEAKVKLLGEIDAYVRDKDPRVRQVSASLTATWQVVEILRPDGESYRDIRPLV 180 NPLDG FE KVKLL EIDAYVRDKDPRVRQVS SL A+WQVVEI+RPDGESYRD+RPLV Sbjct: 121 NPLDGLGFETKVKLLAEIDAYVRDKDPRVRQVSVSLGASWQVVEIMRPDGESYRDVRPLV 180 Query: 181 RVNISVVAGQGDRQESGSKGYGGREGYARFIETKAWRDAADGALREALVNLESVPAPAGE 240 RVNISVVAGQGDRQE+GSKGYGGREGYARF+ET+AWR+AADGA+R+ L+NLES+PAPAGE Sbjct: 181 RVNISVVAGQGDRQETGSKGYGGREGYARFVETQAWREAADGAIRQVLINLESIPAPAGE 240 Query: 241 MDVVLGAGWPGVMLHEAVGHGLEGDFNRKQTSAFAGLMGQQVAAKGVTVVDDGTMASRRG 300 MDVVLG GWPGVMLHEAVGHGLEGDFNRK+TSAFAGLMGQQVAA+GVTVVDDGT+++RRG Sbjct: 241 MDVVLGPGWPGVMLHEAVGHGLEGDFNRKKTSAFAGLMGQQVAARGVTVVDDGTLSARRG 300 Query: 301 SLSIDDEGTPTNRTVLIEDGILVGYMQDRQNARLMGMKPTGNGRRQSYAHVPMPRMTNTY 360 SLSIDDEGTPT+RTVLIEDGILVGYMQDRQNARLMGMKPTGNGRRQ YAHVPMPRMTNTY Sbjct: 301 SLSIDDEGTPTSRTVLIEDGILVGYMQDRQNARLMGMKPTGNGRRQDYAHVPMPRMTNTY 360 Query: 361 MLSGDRDPAEIIASVKNGMYAANFGGGQVDITSGKYVFQCTEAYKIENGKLGAPVKGAML 420 M +GDRDPAEI+ASVKNG+YA NFGGGQVDITSGKYVFQCTEAY+IENGK+GAP+KGAML Sbjct: 361 MPAGDRDPAEILASVKNGVYAVNFGGGQVDITSGKYVFQCTEAYRIENGKIGAPLKGAML 420 Query: 421 IGNGPTDLHRITMIGNDLALDTGIGTCGKNGQGVPVGVGQPTLRMERITVGGTG 474 IGNGPTDLHRITM+GND+ALD G+GTCGKNGQGVPVGVGQPTLRMERITVGGTG Sbjct: 421 IGNGPTDLHRITMVGNDVALDDGVGTCGKNGQGVPVGVGQPTLRMERITVGGTG 474 >ref|YP_316841.1| peptidase U62, modulator of DNA gyrase [Nitrobacter winogradskyi Nb-255] gb|ABA03489.1| microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 [Nitrobacter winogradskyi Nb-255] Length = 475 Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/474 (87%), Positives = 451/474 (95%) Query: 1 MTNPATTSLLDRANLDRDAVRREVARGLEGADDGELFLEFGQTEALVFDNGRLKQATYDT 60 MT+P T SLLDRA+LDRD+VR E+ARGL GADDGELFLE+ Q+EAL+FDNGRLKQATYDT Sbjct: 1 MTSPITASLLDRAHLDRDSVRHEIARGLRGADDGELFLEYSQSEALMFDNGRLKQATYDT 60 Query: 61 SQGFGLRAVKDDAVGYAHSSDVSIPALIRAADAVAAVRGGYAGTFAAAPAHTNIKLYGDE 120 SQGFGLRAVKDDAVGYAHSSDVS+ ALIRAADAV AVRGGY G FA AP HTN++LYGD+ Sbjct: 61 SQGFGLRAVKDDAVGYAHSSDVSLAALIRAADAVGAVRGGYQGAFAVAPGHTNVRLYGDD 120 Query: 121 NPLDGPAFEAKVKLLGEIDAYVRDKDPRVRQVSASLTATWQVVEILRPDGESYRDIRPLV 180 NPLDG FE KVKLL EIDAYVRD+DPRVRQVS SL ATWQVVEI+RPDGE+YRDIRPLV Sbjct: 121 NPLDGLGFETKVKLLAEIDAYVRDRDPRVRQVSVSLGATWQVVEIMRPDGETYRDIRPLV 180 Query: 181 RVNISVVAGQGDRQESGSKGYGGREGYARFIETKAWRDAADGALREALVNLESVPAPAGE 240 RVNISVVAGQGDRQE+GSKGYGGREGYARF+E+KAWR+ ADGA+R+AL+NLES+PAPAGE Sbjct: 181 RVNISVVAGQGDRQETGSKGYGGREGYARFVESKAWREVADGAIRQALINLESIPAPAGE 240 Query: 241 MDVVLGAGWPGVMLHEAVGHGLEGDFNRKQTSAFAGLMGQQVAAKGVTVVDDGTMASRRG 300 MDVVLG GWPGVMLHEAVGHGLEGDFNRK+TSAFAGLMGQQVAAKGVTVVDDGT+++RRG Sbjct: 241 MDVVLGPGWPGVMLHEAVGHGLEGDFNRKKTSAFAGLMGQQVAAKGVTVVDDGTISARRG 300 Query: 301 SLSIDDEGTPTNRTVLIEDGILVGYMQDRQNARLMGMKPTGNGRRQSYAHVPMPRMTNTY 360 SLSIDDEGTPT+RTVLIEDGILVGYMQDRQNARLMGMKPTGNGRRQ YAHVPMPRMTNTY Sbjct: 301 SLSIDDEGTPTSRTVLIEDGILVGYMQDRQNARLMGMKPTGNGRRQDYAHVPMPRMTNTY 360 Query: 361 MLSGDRDPAEIIASVKNGMYAANFGGGQVDITSGKYVFQCTEAYKIENGKLGAPVKGAML 420 M +GDRDPAEI+ASVKNG+YA NFGGGQVDITSGKYVFQCTEAY+IENGK+GAP+KGAML Sbjct: 361 MPAGDRDPAEILASVKNGIYAVNFGGGQVDITSGKYVFQCTEAYRIENGKVGAPLKGAML 420 Query: 421 IGNGPTDLHRITMIGNDLALDTGIGTCGKNGQGVPVGVGQPTLRMERITVGGTG 474 IGNGPTDLHRITMIGND+ALD G+GTCGKNGQGVPVGVGQPTLRMERITVGGTG Sbjct: 421 IGNGPTDLHRITMIGNDVALDDGVGTCGKNGQGVPVGVGQPTLRMERITVGGTG 474