BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0060.p (280 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767810.1| cytochrome C oxidase subunit II [Bradyrhizobium... 453 e-125 ref|YP_001208525.1| cytochrome c oxidase subunit II [Bradyrhizob... 439 e-121 ref|YP_001236996.1| cytochrome c oxidase subunit II [Bradyrhizob... 436 e-120 ref|ZP_08628245.1| cytochrome c oxidase polypeptide II [Bradyrhi... 436 e-120 ref|ZP_01045905.1| cytochrome c oxidase, subunit II [Nitrobacter... 415 e-114 >ref|NP_767810.1| cytochrome C oxidase subunit II [Bradyrhizobium japonicum USDA 110] emb|CAB56818.1| cytochrome c oxidase subunit II [Bradyrhizobium japonicum] gb|AAF78816.1| CoxB [Bradyrhizobium japonicum] dbj|BAC46435.1| cytochrome C oxidase subunit II [Bradyrhizobium japonicum USDA 110] Length = 279 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 222/280 (79%), Positives = 251/280 (89%), Gaps = 1/280 (0%) Query: 1 MKMSIGRLGRQLLGLXAVAGVASVAAGSAFAEMGQPAPWEHTLQEGVTPVMENIIWFHNF 60 M+MS GR+GR LLGL AVAG+ +AFAE+GQPAPWE TLQ+ +PVM+NI+WFHNF Sbjct: 1 MRMSKGRVGRHLLGL-AVAGLTLATGSAAFAELGQPAPWEWTLQQSGSPVMDNIVWFHNF 59 Query: 61 LLVLITLITLFVLALLIIVVVKFNARANPVPSRTTHNTLIEVAWTLIPVLILVGIAVPSF 120 L VLI LITLFVLALL++VV+KFNARANPVPSRTTHNTLIEVAWTL+PVLILVGI+VPSF Sbjct: 60 LFVLIALITLFVLALLVVVVIKFNARANPVPSRTTHNTLIEVAWTLVPVLILVGISVPSF 119 Query: 121 RLLFLELDVPKPDLTVKVTGKQWYWSYAYPDNGKFEFDSLLDKDKQPRLLGVDNEMVVPV 180 RLLFLELDVPK DLT+K TGKQWYWSYAYPDNGKFEFDSL+ +DKQPRLLGVDNEMVVPV Sbjct: 120 RLLFLELDVPKADLTIKATGKQWYWSYAYPDNGKFEFDSLMAQDKQPRLLGVDNEMVVPV 179 Query: 181 NKVVRIQTTGADVIHSFAVPAFGVKIDSIPGRLNESWFKATKTGVFYGQCSELCGKDHAF 240 NKV+R+Q TGADVIH+FA+PAFGVKID+IPGRLNE+WFKA KTG+FYGQCSELCGKDHAF Sbjct: 180 NKVIRVQVTGADVIHAFALPAFGVKIDAIPGRLNETWFKAAKTGMFYGQCSELCGKDHAF 239 Query: 241 MPIAVRVVSDQEFATWVEGAKKKFATNPANSYASAGQAAQ 280 MPIA+RVV D+EFA+WVE AKKKFA+ +YASA Q Sbjct: 240 MPIAIRVVEDKEFASWVETAKKKFASGGTGTYASAAGPTQ 279 >ref|YP_001208525.1| cytochrome c oxidase subunit II [Bradyrhizobium sp. ORS 278] emb|CAL80310.1| cytochrome c oxidase, subunit II [Bradyrhizobium sp. ORS 278] Length = 279 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 223/280 (79%), Positives = 249/280 (88%), Gaps = 1/280 (0%) Query: 1 MKMSIGRLGRQLLGLXAVAGVASVAAGSAFAEMGQPAPWEHTLQEGVTPVMENIIWFHNF 60 MKMS G+LG LL L AV GV V+ GSAFAEMGQPAPWE+ LQE TPVMENI WFH Sbjct: 1 MKMSKGQLGACLLKL-AVTGVTLVSGGSAFAEMGQPAPWEYKLQEAATPVMENITWFHGL 59 Query: 61 LLVLITLITLFVLALLIIVVVKFNARANPVPSRTTHNTLIEVAWTLIPVLILVGIAVPSF 120 LL +ITLITLFVLALL+ VVVKFNARANPVPSRTTHNTL+EVAWTLIPVLILV IAVPSF Sbjct: 60 LLTIITLITLFVLALLVAVVVKFNARANPVPSRTTHNTLLEVAWTLIPVLILVTIAVPSF 119 Query: 121 RLLFLELDVPKPDLTVKVTGKQWYWSYAYPDNGKFEFDSLLDKDKQPRLLGVDNEMVVPV 180 RLLFLELDVPK DLT+K TGKQWYWSYAYPDNGKFEFDSL+ +DK+PRLL VDNEMVVPV Sbjct: 120 RLLFLELDVPKADLTIKATGKQWYWSYAYPDNGKFEFDSLMAQDKKPRLLAVDNEMVVPV 179 Query: 181 NKVVRIQTTGADVIHSFAVPAFGVKIDSIPGRLNESWFKATKTGVFYGQCSELCGKDHAF 240 NKV+R+QTTGADVIH+FAVP+FG+KID+IPGRLNE+WFKATK G++YGQCSELCGKDHA+ Sbjct: 180 NKVIRVQTTGADVIHAFAVPSFGIKIDAIPGRLNETWFKATKVGMYYGQCSELCGKDHAY 239 Query: 241 MPIAVRVVSDQEFATWVEGAKKKFATNPANSYASAGQAAQ 280 MPIAVRVVSDQEF W+E AKKK+A+ P ++YASA +Q Sbjct: 240 MPIAVRVVSDQEFTAWIEDAKKKYASAPTSTYASAAGVSQ 279 >ref|YP_001236996.1| cytochrome c oxidase subunit II [Bradyrhizobium sp. BTAi1] gb|ABQ33090.1| cytochrome c oxidase, subunit II [Bradyrhizobium sp. BTAi1] Length = 279 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 223/280 (79%), Positives = 249/280 (88%), Gaps = 1/280 (0%) Query: 1 MKMSIGRLGRQLLGLXAVAGVASVAAGSAFAEMGQPAPWEHTLQEGVTPVMENIIWFHNF 60 MK+S G+L +LLGL A+AGV V GSAFAE GQPAPWE+ LQE TPVMENI WFH Sbjct: 1 MKVSKGQLSARLLGL-AMAGVTLVGGGSAFAETGQPAPWEYKLQEAATPVMENITWFHGL 59 Query: 61 LLVLITLITLFVLALLIIVVVKFNARANPVPSRTTHNTLIEVAWTLIPVLILVGIAVPSF 120 LL +ITLITLFVLALL+ VVVKFNARANPVPSRTTHNTL+EVAWTLIPVLILV IAVPSF Sbjct: 60 LLTIITLITLFVLALLVAVVVKFNARANPVPSRTTHNTLLEVAWTLIPVLILVTIAVPSF 119 Query: 121 RLLFLELDVPKPDLTVKVTGKQWYWSYAYPDNGKFEFDSLLDKDKQPRLLGVDNEMVVPV 180 RLLFLELDVPK D+T+K TGKQWYWSYAYPDNGKFEFDSL+ +DK+PRLL VDNEMVVPV Sbjct: 120 RLLFLELDVPKADITIKATGKQWYWSYAYPDNGKFEFDSLMAQDKKPRLLAVDNEMVVPV 179 Query: 181 NKVVRIQTTGADVIHSFAVPAFGVKIDSIPGRLNESWFKATKTGVFYGQCSELCGKDHAF 240 NKV+R+QTTGADVIHS+A+P+FGVKID+IPGRLNE+WFKATK G++YGQCSELCGKDHAF Sbjct: 180 NKVIRVQTTGADVIHSWAIPSFGVKIDAIPGRLNETWFKATKVGMYYGQCSELCGKDHAF 239 Query: 241 MPIAVRVVSDQEFATWVEGAKKKFATNPANSYASAGQAAQ 280 MPIAVRVVSDQEF WVE AKKKFA+ P ++YASA +Q Sbjct: 240 MPIAVRVVSDQEFTAWVEDAKKKFASAPTSTYASAAGVSQ 279 >ref|ZP_08628245.1| cytochrome c oxidase polypeptide II [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09154.1| cytochrome c oxidase polypeptide II [Bradyrhizobiaceae bacterium SG-6C] Length = 311 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/282 (71%), Positives = 243/282 (86%), Gaps = 2/282 (0%) Query: 1 MKMSIGRLGRQLLGLXAVAGVASVAAGSAFA--EMGQPAPWEHTLQEGVTPVMENIIWFH 58 MKMS G++GR++LG A V + A + A +GQP+PWE+TLQ +PVM+NI WFH Sbjct: 30 MKMSNGQMGRRVLGFAVAATVLAAAGAAFAAGGTLGQPSPWEYTLQPSASPVMDNITWFH 89 Query: 59 NFLLVLITLITLFVLALLIIVVVKFNARANPVPSRTTHNTLIEVAWTLIPVLILVGIAVP 118 NFLL +I+ IT+FVL LLI+V VKFNA++NPVPS+TTHNTLIEV WT++PVL+LVGIAVP Sbjct: 90 NFLLWIISAITIFVLILLILVAVKFNAKSNPVPSKTTHNTLIEVVWTIVPVLVLVGIAVP 149 Query: 119 SFRLLFLELDVPKPDLTVKVTGKQWYWSYAYPDNGKFEFDSLLDKDKQPRLLGVDNEMVV 178 SFRLLF +LD+PK DLT+K TGKQWYW+Y YPDNGKFEFDSL+ DK PRLL VDNE+VV Sbjct: 150 SFRLLFQQLDIPKADLTIKATGKQWYWTYTYPDNGKFEFDSLMVADKAPRLLAVDNEVVV 209 Query: 179 PVNKVVRIQTTGADVIHSFAVPAFGVKIDSIPGRLNESWFKATKTGVFYGQCSELCGKDH 238 PVNKV+R+Q TGADVIHSFA+PAFGVKID++PGRLNE+WFKATK G++YGQCSELCGKDH Sbjct: 210 PVNKVIRVQVTGADVIHSFAMPAFGVKIDAVPGRLNETWFKATKEGMYYGQCSELCGKDH 269 Query: 239 AFMPIAVRVVSDQEFATWVEGAKKKFATNPANSYASAGQAAQ 280 A+MPIA++VV+DQEF TWVE AKKK+ATNPANSYAS G AQ Sbjct: 270 AYMPIAIKVVNDQEFTTWVEAAKKKYATNPANSYASIGTVAQ 311 >ref|ZP_01045905.1| cytochrome c oxidase, subunit II [Nitrobacter sp. Nb-311A] gb|EAQ36276.1| cytochrome c oxidase, subunit II [Nitrobacter sp. Nb-311A] Length = 284 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 209/281 (74%), Positives = 242/281 (86%), Gaps = 8/281 (2%) Query: 1 MKMSIG----RLGRQLLGLXAVAGVASVAAGSAFA--EMGQPAPWEHTLQEGVTPVMENI 54 MKMS+G R GR+ LGL GVA++AAG + E+GQP W LQ GVTPVME+I Sbjct: 1 MKMSMGQIGRRFGRRFLGL--AFGVAALAAGGTVSAEELGQPHAWALGLQAGVTPVMESI 58 Query: 55 IWFHNFLLVLITLITLFVLALLIIVVVKFNARANPVPSRTTHNTLIEVAWTLIPVLILVG 114 H+ LLV+ITLITLFV ALLI+ +++FNAR+NPVPS+TTHNT+IEVAWT+IPVLILVG Sbjct: 59 ASMHSGLLVVITLITLFVTALLIVAMLRFNARSNPVPSKTTHNTMIEVAWTIIPVLILVG 118 Query: 115 IAVPSFRLLFLELDVPKPDLTVKVTGKQWYWSYAYPDNGKFEFDSLLDKDKQPRLLGVDN 174 IAVPSFRLLF +LD+PK DLTVK GKQWYWSYAYPDNGKFE+DSL+ DKQPR+L VDN Sbjct: 119 IAVPSFRLLFQQLDLPKADLTVKAVGKQWYWSYAYPDNGKFEYDSLMSHDKQPRMLAVDN 178 Query: 175 EMVVPVNKVVRIQTTGADVIHSFAVPAFGVKIDSIPGRLNESWFKATKTGVFYGQCSELC 234 E+VVPVNKVVR+Q TGADVIHSF VPAFG+K+D+IPGRLNE+WFKATKTG+FYGQCSELC Sbjct: 179 ELVVPVNKVVRVQVTGADVIHSFGVPAFGIKVDAIPGRLNETWFKATKTGMFYGQCSELC 238 Query: 235 GKDHAFMPIAVRVVSDQEFATWVEGAKKKFATNPANSYASA 275 G+DHAFMPIAVRVVSDQ+FA WVE AKKKFA+NPAN+ ASA Sbjct: 239 GRDHAFMPIAVRVVSDQDFAAWVEAAKKKFASNPANAVASA 279