BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0106.0055.p         (54 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767813.1| CoxF protein [Bradyrhizobium japonicum USDA 110...    89   2e-16
ref|YP_002287695.1| hypothetical protein OCAR_4688 [Oligotropha ...    83   2e-14
ref|YP_575618.1| CoxF protein [Nitrobacter hamburgensis X14] >gi...    82   3e-14
ref|ZP_07027249.1| conserved hypothetical protein [Afipia sp. 1N...    82   4e-14
ref|ZP_01045194.1| CoxF protein [Nitrobacter sp. Nb-311A] >gi|85...    77   9e-13

>ref|NP_767813.1| CoxF protein [Bradyrhizobium japonicum USDA 110]
 emb|CAB56821.1| hypothetical protein [Bradyrhizobium japonicum]
 gb|AAF78813.1| CoxF [Bradyrhizobium japonicum]
 dbj|BAC46438.1| CoxF protein [Bradyrhizobium japonicum USDA 110]
          Length = 57

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 50/52 (96%)

Query: 3  EKREPEGIVLTEAQLRSRRQRSIAIALALGILVVLFFAVTLVKGPAVLVRPL 54
          +K EP+GIVLTEAQ +SRRQRSIAIALALG+LVVLFFAVT+VKGPAVLVRP+
Sbjct: 6  DKPEPDGIVLTEAQKKSRRQRSIAIALALGVLVVLFFAVTMVKGPAVLVRPM 57


>ref|YP_002287695.1| hypothetical protein OCAR_4688 [Oligotropha carboxidovorans OM5]
 ref|YP_004634178.1| hypothetical protein OCA5_c32610 [Oligotropha carboxidovorans
          OM5]
 gb|ACI91830.1| conserved domain protein [Oligotropha carboxidovorans OM5]
 gb|AEI04307.1| hypothetical protein OCA4_c32090 [Oligotropha carboxidovorans
          OM4]
 gb|AEI07937.1| hypothetical protein OCA5_c32610 [Oligotropha carboxidovorans
          OM5]
          Length = 58

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 47/54 (87%)

Query: 1  MDEKREPEGIVLTEAQLRSRRQRSIAIALALGILVVLFFAVTLVKGPAVLVRPL 54
          M+  +EPEGIVLT+AQ R RR+RSIAIA+ LGILV LFF VTLVKGPAVLVRP+
Sbjct: 5  MNNDQEPEGIVLTDAQKRRRRERSIAIAVVLGILVTLFFIVTLVKGPAVLVRPM 58


>ref|YP_575618.1| CoxF protein [Nitrobacter hamburgensis X14]
 ref|YP_578649.1| CoxF protein [Nitrobacter hamburgensis X14]
 gb|ABE61158.1| CoxF protein [Nitrobacter hamburgensis X14]
 gb|ABE64189.1| CoxF protein [Nitrobacter hamburgensis X14]
          Length = 54

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 47/54 (87%)

Query: 1  MDEKREPEGIVLTEAQLRSRRQRSIAIALALGILVVLFFAVTLVKGPAVLVRPL 54
          MD K +P+ IVLTEAQ + RR+RSIAIA ALGILVVLFFAVTLVKGP V+VRP+
Sbjct: 1  MDNKPKPDEIVLTEAQKKRRRERSIAIACALGILVVLFFAVTLVKGPGVIVRPM 54


>ref|ZP_07027249.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gb|EFI51005.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 55

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 48/53 (90%)

Query: 2  DEKREPEGIVLTEAQLRSRRQRSIAIALALGILVVLFFAVTLVKGPAVLVRPL 54
          +E  + EGIVLT+AQ R RR+RSIAIALALGILVVLFFAVTLVKGPAVL+RP+
Sbjct: 3  NEPGQEEGIVLTDAQKRRRRERSIAIALALGILVVLFFAVTLVKGPAVLIRPM 55


>ref|ZP_01045194.1| CoxF protein [Nitrobacter sp. Nb-311A]
 ref|ZP_01045908.1| CoxF protein [Nitrobacter sp. Nb-311A]
 ref|ZP_01046307.1| CoxF protein [Nitrobacter sp. Nb-311A]
 ref|ZP_01048085.1| CoxF protein [Nitrobacter sp. Nb-311A]
 gb|EAQ33983.1| CoxF protein [Nitrobacter sp. Nb-311A]
 gb|EAQ35844.1| CoxF protein [Nitrobacter sp. Nb-311A]
 gb|EAQ36279.1| CoxF protein [Nitrobacter sp. Nb-311A]
 gb|EAQ37199.1| CoxF protein [Nitrobacter sp. Nb-311A]
          Length = 56

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 47/56 (83%), Gaps = 2/56 (3%)

Query: 1  MDEKREPEG--IVLTEAQLRSRRQRSIAIALALGILVVLFFAVTLVKGPAVLVRPL 54
          MD + +P+G  IVLTEAQ + RR+RSIAIA ALG+LV+LFFAVT +KGP VLVRP+
Sbjct: 1  MDSENKPDGDGIVLTEAQKKRRRERSIAIAWALGVLVLLFFAVTFIKGPGVLVRPM 56