BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0053.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767815.1| cytochrome C oxidase subunit III [Bradyrhizobiu... 541 e-152 ref|ZP_08628250.1| cytochrome c oxidase polypeptide III [Bradyrh... 517 e-145 ref|YP_001237001.1| cytochrome c oxidase subunit III [Bradyrhizo... 493 e-137 ref|NP_946189.1| cytochrome c oxidase subunit III [Rhodopseudomo... 489 e-136 ref|YP_001208520.1| cytochrome c oxidase subunit III [Bradyrhizo... 484 e-135 >ref|NP_767815.1| cytochrome C oxidase subunit III [Bradyrhizobium japonicum USDA 110] emb|CAB56823.1| cytochrome c oxidase subunit III [Bradyrhizobium japonicum] gb|AAF78811.1| CoxC [Bradyrhizobium japonicum] dbj|BAC46440.1| cytochrome C oxidase subunit III [Bradyrhizobium japonicum USDA 110] Length = 298 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 274/298 (91%), Positives = 284/298 (95%) Query: 1 MAEAQVKHHDYHLVDPSPWPVVGSFSAFIMAFGAIGWMHHMFSAAPIVFGVGTIGVLYTM 60 MA AQ KHHDYHLVDPSPWP VGS SAFIMA GAI WMHHMFSAAPIVFGVGT+GVLYTM Sbjct: 1 MATAQGKHHDYHLVDPSPWPAVGSLSAFIMAVGAIAWMHHMFSAAPIVFGVGTVGVLYTM 60 Query: 61 ASWWGDVIREAQYKGDHTRVVQISHRYGMILFIASEVMFFVAWFWAFFNSALFPADAVHA 120 ASWWGDVI+EAQYKGDHTRVVQ+ HRYGMILFIASEVMFFVAWFWA+FN+ALFPADAVHA Sbjct: 61 ASWWGDVIKEAQYKGDHTRVVQLHHRYGMILFIASEVMFFVAWFWAYFNAALFPADAVHA 120 Query: 121 TRDAVFGCGAGTAMGACSVPGTWPPKGIETFDPWHLPLLNTLLLLTSGTTVTWAHHALLE 180 TRDAVFGCG GTA GAC+VPGTWPP GIETFDPWHLPLLNTL+LLTSGTTVTWAHHALLE Sbjct: 121 TRDAVFGCGLGTAAGACAVPGTWPPHGIETFDPWHLPLLNTLILLTSGTTVTWAHHALLE 180 Query: 181 NDRQGLKQGLILTVILGALFTCVQAYEYAHATFSFGGNVYGATFFMATGFHGFHVLVGTI 240 NDRQGLK GLILTV+LGALFTCVQAYEY+HA FSF GNVYGATFFMATGFHGFHVLVGTI Sbjct: 181 NDRQGLKYGLILTVVLGALFTCVQAYEYSHAAFSFAGNVYGATFFMATGFHGFHVLVGTI 240 Query: 241 FLLVCLIRAYAGHFTPKQHLGFEFAAWYWHFVDVVWLFLFICIYVWGHGAETMAHGAH 298 FLLVCL RAYAGHFTPKQHLGFEFAAWYWHFVDVVWLFLF+CIYVWGHGAETMAHGAH Sbjct: 241 FLLVCLFRAYAGHFTPKQHLGFEFAAWYWHFVDVVWLFLFLCIYVWGHGAETMAHGAH 298 >ref|ZP_08628250.1| cytochrome c oxidase polypeptide III [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09159.1| cytochrome c oxidase polypeptide III [Bradyrhizobiaceae bacterium SG-6C] Length = 298 Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust. Identities = 261/298 (87%), Positives = 274/298 (91%) Query: 1 MAEAQVKHHDYHLVDPSPWPVVGSFSAFIMAFGAIGWMHHMFSAAPIVFGVGTIGVLYTM 60 MA Q KHHDYHLVDPSPWPVVGS SAFIMA GA+ WMH MF+ APIVFGVGTIGVLYTM Sbjct: 1 MATGQAKHHDYHLVDPSPWPVVGSISAFIMAVGAVAWMHKMFAGAPIVFGVGTIGVLYTM 60 Query: 61 ASWWGDVIREAQYKGDHTRVVQISHRYGMILFIASEVMFFVAWFWAFFNSALFPADAVHA 120 ASWWGDVIREAQYKGDHTRVVQ+ HRYGMILFIASEVMFFVAWFWA+FN+ALFPAD VH Sbjct: 61 ASWWGDVIREAQYKGDHTRVVQLHHRYGMILFIASEVMFFVAWFWAYFNAALFPADPVHM 120 Query: 121 TRDAVFGCGAGTAMGACSVPGTWPPKGIETFDPWHLPLLNTLLLLTSGTTVTWAHHALLE 180 TRDA+FGCGAG + C +PG WPP GIETFDPWHLPLLNTL+LLTSGTTVTWAHHALLE Sbjct: 121 TRDALFGCGAGVSPADCKIPGVWPPHGIETFDPWHLPLLNTLILLTSGTTVTWAHHALLE 180 Query: 181 NDRQGLKQGLILTVILGALFTCVQAYEYAHATFSFGGNVYGATFFMATGFHGFHVLVGTI 240 DR+GLK GLILTV+LGALFTCVQA+EY+HA FSF GNVYGATFFMATGFHGFHVLVGTI Sbjct: 181 GDRKGLKWGLILTVVLGALFTCVQAFEYSHAAFSFAGNVYGATFFMATGFHGFHVLVGTI 240 Query: 241 FLLVCLIRAYAGHFTPKQHLGFEFAAWYWHFVDVVWLFLFICIYVWGHGAETMAHGAH 298 FLLVCL RAYAGHFTPKQHLGFEFAAWYWHFVDVVWLFLFICIYVWGHGA TMAHGAH Sbjct: 241 FLLVCLFRAYAGHFTPKQHLGFEFAAWYWHFVDVVWLFLFICIYVWGHGASTMAHGAH 298 >ref|YP_001237001.1| cytochrome c oxidase subunit III [Bradyrhizobium sp. BTAi1] gb|ABQ33095.1| cytochrome c oxidase, subunit III [Bradyrhizobium sp. BTAi1] Length = 285 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 253/298 (84%), Positives = 267/298 (89%), Gaps = 13/298 (4%) Query: 1 MAEAQVKHHDYHLVDPSPWPVVGSFSAFIMAFGAIGWMHHMFSAAPIVFGVGTIGVLYTM 60 MAEA KHHDYHLVDPSPWP VGS SAFIMAFGAI WMH MFS APIVFG+GTIGVLYTM Sbjct: 1 MAEAHAKHHDYHLVDPSPWPFVGSVSAFIMAFGAIAWMHKMFSGAPIVFGIGTIGVLYTM 60 Query: 61 ASWWGDVIREAQYKGDHTRVVQISHRYGMILFIASEVMFFVAWFWAFFNSALFPADAVHA 120 ASWWGDVI+EAQYKGDHTRVVQ+ HRYGMILFIASEVMFFVAWFWA+FNSAL+P V A Sbjct: 61 ASWWGDVIKEAQYKGDHTRVVQLHHRYGMILFIASEVMFFVAWFWAYFNSALYPGYEVQA 120 Query: 121 TRDAVFGCGAGTAMGACSVPGTWPPKGIETFDPWHLPLLNTLLLLTSGTTVTWAHHALLE 180 TRDA+FG G WPPKGIETFDPWHLPLLNTL+LLTSGTTVTWAHHALLE Sbjct: 121 TRDALFG-------------GVWPPKGIETFDPWHLPLLNTLILLTSGTTVTWAHHALLE 167 Query: 181 NDRQGLKQGLILTVILGALFTCVQAYEYAHATFSFGGNVYGATFFMATGFHGFHVLVGTI 240 DR+GLK GLILTV+LGA FTCVQAYEY+HATFSF G++YGATFFMATGFHGFHVLVGTI Sbjct: 168 GDRKGLKYGLILTVLLGATFTCVQAYEYSHATFSFAGHIYGATFFMATGFHGFHVLVGTI 227 Query: 241 FLLVCLIRAYAGHFTPKQHLGFEFAAWYWHFVDVVWLFLFICIYVWGHGAETMAHGAH 298 FLLVCL+R YAGHFTPKQHLGFEFAAWYWHFVDVVWLFLF+CIYVWGHGAETMAHGAH Sbjct: 228 FLLVCLVRVYAGHFTPKQHLGFEFAAWYWHFVDVVWLFLFVCIYVWGHGAETMAHGAH 285 >ref|NP_946189.1| cytochrome c oxidase subunit III [Rhodopseudomonas palustris CGA009] ref|YP_001989937.1| cytochrome C oxidase subunit III [Rhodopseudomonas palustris TIE-1] emb|CAE26280.1| cytochrome c oxidase subunit III [Rhodopseudomonas palustris CGA009] gb|ACE99461.1| cytochrome c oxidase subunit III [Rhodopseudomonas palustris TIE-1] Length = 284 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 248/296 (83%), Positives = 265/296 (89%), Gaps = 13/296 (4%) Query: 1 MAEAQVKHHDYHLVDPSPWPVVGSFSAFIMAFGAIGWMHHMFSAAPIVFGVGTIGVLYTM 60 MA A VKHHDYHLVDPSPWP VGS SAF+MA GA+ WMHHM+ APIVFGVG IGVLYTM Sbjct: 1 MATAHVKHHDYHLVDPSPWPFVGSVSAFVMALGAVSWMHHMYQGAPIVFGVGVIGVLYTM 60 Query: 61 ASWWGDVIREAQYKGDHTRVVQISHRYGMILFIASEVMFFVAWFWAFFNSALFPADAVHA 120 ASWW DVIREAQY+ DHTRVVQ+SHRYGMILFIASEVMFFVAWFWA+FN+ALFPAD VHA Sbjct: 61 ASWWSDVIREAQYQHDHTRVVQLSHRYGMILFIASEVMFFVAWFWAYFNAALFPADPVHA 120 Query: 121 TRDAVFGCGAGTAMGACSVPGTWPPKGIETFDPWHLPLLNTLLLLTSGTTVTWAHHALLE 180 TR+A+FG G WPPKGIETFDPWHLPLLNTL+LLTSGTTVTWAHHALL+ Sbjct: 121 TREALFG-------------GVWPPKGIETFDPWHLPLLNTLILLTSGTTVTWAHHALLQ 167 Query: 181 NDRQGLKQGLILTVILGALFTCVQAYEYAHATFSFGGNVYGATFFMATGFHGFHVLVGTI 240 NDR+GLKQGLI TV+LGA F+CVQ YEY+HATFSF GN+YGATFFMATGFHGFHVLVGTI Sbjct: 168 NDRKGLKQGLICTVLLGATFSCVQVYEYSHATFSFAGNIYGATFFMATGFHGFHVLVGTI 227 Query: 241 FLLVCLIRAYAGHFTPKQHLGFEFAAWYWHFVDVVWLFLFICIYVWGHGAETMAHG 296 FLLVCLIRAYAGHFTPKQHLGFEFAAWYWHFVDVVWLFLF+CIYVWGHGA TMAHG Sbjct: 228 FLLVCLIRAYAGHFTPKQHLGFEFAAWYWHFVDVVWLFLFVCIYVWGHGASTMAHG 283 >ref|YP_001208520.1| cytochrome c oxidase subunit III [Bradyrhizobium sp. ORS 278] emb|CAL80305.1| cytochrome c oxidase, subunit III [Bradyrhizobium sp. ORS 278] Length = 285 Score = 484 bits (1246), Expect = e-135, Method: Compositional matrix adjust. Identities = 249/298 (83%), Positives = 264/298 (88%), Gaps = 13/298 (4%) Query: 1 MAEAQVKHHDYHLVDPSPWPVVGSFSAFIMAFGAIGWMHHMFSAAPIVFGVGTIGVLYTM 60 MAEA KHHDYHLVDPSPWP VGS SAFIMAFGAIGWMH MF AAPIVFG+G IGVLYTM Sbjct: 1 MAEAHAKHHDYHLVDPSPWPFVGSVSAFIMAFGAIGWMHKMFGAAPIVFGIGLIGVLYTM 60 Query: 61 ASWWGDVIREAQYKGDHTRVVQISHRYGMILFIASEVMFFVAWFWAFFNSALFPADAVHA 120 ASWWGDVI+EAQYKGDHTRVVQ+ HRYGMILFIASEVMFFVAWFWA+FN ALFP V A Sbjct: 61 ASWWGDVIKEAQYKGDHTRVVQLHHRYGMILFIASEVMFFVAWFWAYFNVALFPGYEVQA 120 Query: 121 TRDAVFGCGAGTAMGACSVPGTWPPKGIETFDPWHLPLLNTLLLLTSGTTVTWAHHALLE 180 TRDA+ G G WPPKGIETFDPWHLPLLNTL+LLTSGTTVTWAHHALLE Sbjct: 121 TRDALIG-------------GVWPPKGIETFDPWHLPLLNTLILLTSGTTVTWAHHALLE 167 Query: 181 NDRQGLKQGLILTVILGALFTCVQAYEYAHATFSFGGNVYGATFFMATGFHGFHVLVGTI 240 DR+GLK GLILT++LGA FTCVQAYEY HATFSF G++YG+TFFMATGFHGFHVLVGTI Sbjct: 168 GDRKGLKYGLILTILLGATFTCVQAYEYGHATFSFAGHIYGSTFFMATGFHGFHVLVGTI 227 Query: 241 FLLVCLIRAYAGHFTPKQHLGFEFAAWYWHFVDVVWLFLFICIYVWGHGAETMAHGAH 298 FL+VCL RAYAGHFTPKQHLGFEFAAWYWHFVDVVWLFLF+CIYVWGHGAE+MAHGAH Sbjct: 228 FLIVCLARAYAGHFTPKQHLGFEFAAWYWHFVDVVWLFLFLCIYVWGHGAESMAHGAH 285