BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0042.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004134502.1| lysr substrate-binding protein [Mesorhizobiu... 441 e-122 ref|YP_001094889.1| DNA-binding transcriptional activator GcvA [... 278 7e-73 ref|ZP_08565779.1| glycine cleavage system transcriptional activ... 272 5e-71 ref|YP_738837.1| DNA-binding transcriptional activator GcvA [She... 270 2e-70 ref|YP_001049751.1| DNA-binding transcriptional activator GcvA [... 270 3e-70 >ref|YP_004134502.1| lysr substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV15328.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 301 Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust. Identities = 215/302 (71%), Positives = 250/302 (82%), Gaps = 3/302 (0%) Query: 1 MRPRLPQLNALKSFEAAARHESFTRAAEELCVTQGAVSHQVKALEAELAIKLFNRERQRL 60 M RLP LNALK+FEAAARH SFTRAA+EL VTQGAVSHQVKALE EL ++LF+RERQ+L Sbjct: 1 MARRLPSLNALKAFEAAARHGSFTRAADELSVTQGAVSHQVKALELELGVRLFDRERQKL 60 Query: 61 IITEAGRDYLAVVRDALDRIAIGTERLLQRQNTGVLTVSTSPDFAAKWLVHRLGHFAEAH 120 IT AG YL VVRDA DRIA+GT+R+ G LTVSTSPDFA+KWLV+RLG FAE H Sbjct: 61 SITRAGLSYLEVVRDAFDRIALGTQRIQHLSRAGALTVSTSPDFASKWLVNRLGRFAETH 120 Query: 121 SGIDLRVSATLHHVDFAREEVDLAVRHGDGNWPGLDAVRLSPERLFAVCSPKLLSGKRRL 180 IDLRVSAT+HHVDFARE+VDLAVRHGDGNW G D VRL E+LFAVCSPKL +R+ Sbjct: 121 PDIDLRVSATMHHVDFAREDVDLAVRHGDGNWAGHDVVRLCSEQLFAVCSPKL---HQRM 177 Query: 181 SNPADILKFPLIHMDSRADWKNWLQEAGLDDAAATHGPVLNRASMVIDAAINGQGIALAR 240 P+D+LKFPL+H+D R DW WL+ AG+ DA +HGPVLNRASMVIDAA++GQG+ALAR Sbjct: 178 REPSDVLKFPLLHLDDRKDWSEWLEAAGVRDARLSHGPVLNRASMVIDAAVDGQGVALAR 237 Query: 241 TTLAAWDLINGHLARPFPQSLPLSKTYWILCPKATANLPKIVTFRDWLLSEAASDLRRLR 300 TTLAAWDLING L RPF +L LSKTYWI+CP+AT+ +PKIVTFR+WLL+EAA D+ RL+ Sbjct: 238 TTLAAWDLINGRLVRPFATALRLSKTYWIVCPQATSMVPKIVTFREWLLAEAADDVSRLQ 297 Query: 301 KL 302 L Sbjct: 298 TL 299 >ref|YP_001094889.1| DNA-binding transcriptional activator GcvA [Shewanella loihica PV-4] gb|ABO24630.1| transcriptional regulator, LysR family [Shewanella loihica PV-4] Length = 303 Score = 278 bits (711), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 139/289 (48%), Positives = 190/289 (65%) Query: 1 MRPRLPQLNALKSFEAAARHESFTRAAEELCVTQGAVSHQVKALEAELAIKLFNRERQRL 60 M RLP LNA+K+FEAAARH SFTRAAEEL VTQ AVSHQ+KALE L +KLF R+ + L Sbjct: 1 MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSL 60 Query: 61 IITEAGRDYLAVVRDALDRIAIGTERLLQRQNTGVLTVSTSPDFAAKWLVHRLGHFAEAH 120 ++TE G+ Y ++D ++A T+RLL R G LTVSTSP FA +WLV RL +F+E + Sbjct: 61 LLTEEGQGYFLDIKDIFVQLADATDRLLARSAIGSLTVSTSPSFAIQWLVPRLANFSENN 120 Query: 121 SGIDLRVSATLHHVDFAREEVDLAVRHGDGNWPGLDAVRLSPERLFAVCSPKLLSGKRRL 180 ID+R+ A ++VD+A+ +G GNWPGL A +L E L VCSP LLSG + L Sbjct: 121 PDIDVRIKAVDDETSSLTDDVDVAIYYGMGNWPGLRADKLRNEVLIPVCSPMLLSGPKPL 180 Query: 181 SNPADILKFPLIHMDSRADWKNWLQEAGLDDAAATHGPVLNRASMVIDAAINGQGIALAR 240 S P+D+ L+H SR DW+ W ++ G++D GP+ + +S+V+ AA +GQG+AL Sbjct: 181 SQPSDLKHHTLLHDSSRHDWQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVALGY 240 Query: 241 TTLAAWDLINGHLARPFPQSLPLSKTYWILCPKATANLPKIVTFRDWLL 289 + LA D+ G L PFP+ L Y+++C + A + KIV FR W+L Sbjct: 241 SVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWML 289 >ref|ZP_08565779.1| glycine cleavage system transcriptional activator GcvA [Shewanella sp. HN-41] gb|EGM70774.1| glycine cleavage system transcriptional activator GcvA [Shewanella sp. HN-41] Length = 303 Score = 272 bits (695), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 138/297 (46%), Positives = 191/297 (64%) Query: 1 MRPRLPQLNALKSFEAAARHESFTRAAEELCVTQGAVSHQVKALEAELAIKLFNRERQRL 60 M RLP LNA+K+FEAAARH SFTRAAEEL VTQ AVSHQ+KALE L +KLF R+ + L Sbjct: 1 MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL 60 Query: 61 IITEAGRDYLAVVRDALDRIAIGTERLLQRQNTGVLTVSTSPDFAAKWLVHRLGHFAEAH 120 ++TE G+ Y ++D ++A T+RLL R G LTVS SP FA +WLV RL F+E + Sbjct: 61 LLTEEGQSYFLDIKDIFTQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKN 120 Query: 121 SGIDLRVSATLHHVDFAREEVDLAVRHGDGNWPGLDAVRLSPERLFAVCSPKLLSGKRRL 180 ID+R+ A ++VD+A+ +G GNWPGL A +L E L VCSP LL+G + L Sbjct: 121 PDIDVRIKAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGSKPL 180 Query: 181 SNPADILKFPLIHMDSRADWKNWLQEAGLDDAAATHGPVLNRASMVIDAAINGQGIALAR 240 S P+D+ L+H SR DW+ W ++ G++D GP+ + +S+V+ AA +GQG+AL Sbjct: 181 SKPSDLKYHTLLHDMSRHDWQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVALGY 240 Query: 241 TTLAAWDLINGHLARPFPQSLPLSKTYWILCPKATANLPKIVTFRDWLLSEAASDLR 297 + LA D+ G L PF + L Y+++C + A L K+V FR+W+L A + R Sbjct: 241 SVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWMLDMFAEESR 297 >ref|YP_738837.1| DNA-binding transcriptional activator GcvA [Shewanella sp. MR-7] gb|ABI43780.1| transcriptional regulator, LysR family [Shewanella sp. MR-7] Length = 303 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 138/297 (46%), Positives = 189/297 (63%) Query: 1 MRPRLPQLNALKSFEAAARHESFTRAAEELCVTQGAVSHQVKALEAELAIKLFNRERQRL 60 M RLP LNA+K+FEAAARH SFTRAAEEL VTQ AVSHQ+KALE L +KLF R+ + L Sbjct: 1 MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL 60 Query: 61 IITEAGRDYLAVVRDALDRIAIGTERLLQRQNTGVLTVSTSPDFAAKWLVHRLGHFAEAH 120 ++TE G+ Y ++D ++A T+RLL R G LTVS SP FA +WLV RL F+E + Sbjct: 61 LLTEEGQSYFLDIKDIFTQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKN 120 Query: 121 SGIDLRVSATLHHVDFAREEVDLAVRHGDGNWPGLDAVRLSPERLFAVCSPKLLSGKRRL 180 ID+R+ A ++VD+A+ +G GNWPGL A +L E L VCSP LL+G + L Sbjct: 121 PDIDVRIKAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGPKPL 180 Query: 181 SNPADILKFPLIHMDSRADWKNWLQEAGLDDAAATHGPVLNRASMVIDAAINGQGIALAR 240 S P D+ L+H SR DW+ W ++ G+ D GP+ + +S+V+ AA +GQG+AL Sbjct: 181 SKPEDLKYHTLLHDMSRHDWQAWFRQCGISDINVNQGPIFSHSSLVLQAAAHGQGVALGY 240 Query: 241 TTLAAWDLINGHLARPFPQSLPLSKTYWILCPKATANLPKIVTFRDWLLSEAASDLR 297 + LA D+ G L PF + L Y+++C + A L K+V FR+W+L A + R Sbjct: 241 SVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWMLDMFAEESR 297 >ref|YP_001049751.1| DNA-binding transcriptional activator GcvA [Shewanella baltica OS155] ref|YP_001365563.1| DNA-binding transcriptional activator GcvA [Shewanella baltica OS185] ref|YP_001553823.1| DNA-binding transcriptional activator GcvA [Shewanella baltica OS195] ref|YP_002358905.1| DNA-binding transcriptional activator GcvA [Shewanella baltica OS223] ref|ZP_07391093.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gb|ABN60882.1| transcriptional regulator, LysR family [Shewanella baltica OS155] gb|ABS07500.1| transcriptional regulator, LysR family [Shewanella baltica OS185] gb|ABX48563.1| transcriptional regulator, LysR family [Shewanella baltica OS195] gb|ACK47482.1| transcriptional regulator, LysR family [Shewanella baltica OS223] gb|EFM16389.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gb|ADT93598.1| transcriptional regulator, LysR family [Shewanella baltica OS678] gb|AEG12212.1| transcriptional regulator, LysR family [Shewanella baltica BA175] gb|AEH13231.1| transcriptional regulator, LysR family [Shewanella baltica OS117] Length = 303 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 137/297 (46%), Positives = 191/297 (64%) Query: 1 MRPRLPQLNALKSFEAAARHESFTRAAEELCVTQGAVSHQVKALEAELAIKLFNRERQRL 60 M RLP LNA+K+FEAAARH SFTRAAEEL VTQ AVSHQ+KALE L +KLF R+ + L Sbjct: 1 MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL 60 Query: 61 IITEAGRDYLAVVRDALDRIAIGTERLLQRQNTGVLTVSTSPDFAAKWLVHRLGHFAEAH 120 ++TE G+ Y ++D ++A T+RLL R G LTVS SP FA +WLV RL F+E + Sbjct: 61 LLTEEGQSYFLDIKDIFIQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKN 120 Query: 121 SGIDLRVSATLHHVDFAREEVDLAVRHGDGNWPGLDAVRLSPERLFAVCSPKLLSGKRRL 180 ID+R+ A ++VD+A+ +G GNWPGL A +L E L VCSP LL+G + L Sbjct: 121 PDIDVRIKAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGPKPL 180 Query: 181 SNPADILKFPLIHMDSRADWKNWLQEAGLDDAAATHGPVLNRASMVIDAAINGQGIALAR 240 S P+D+ L+H +R DW+ W ++ G++D GP+ + +S+V+ AA +GQG+AL Sbjct: 181 SKPSDLKYHTLLHDMNRHDWQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVALGY 240 Query: 241 TTLAAWDLINGHLARPFPQSLPLSKTYWILCPKATANLPKIVTFRDWLLSEAASDLR 297 + LA D+ G L PF + L Y+++C + A L K+V FR+W+L A + R Sbjct: 241 SVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWMLDMFAEESR 297