BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0106.0035.p         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EFW77299.1| hypothetical protein PsgB076_29125 [Pseudomonas s...    40   0.16 
ref|YP_004227933.1| Copper-binding periplasmic protein CusF [Bur...    37   1.2  
ref|ZP_08823005.1| hypothetical protein ThidrDRAFT_1819 [Thiorho...    36   2.1  
ref|ZP_02881343.1| conserved hypothetical protein [Burkholderia ...    36   2.2  
ref|YP_003642488.1| hypothetical protein Tint_0763 [Thiomonas in...    36   2.3  

>gb|EFW77299.1| hypothetical protein PsgB076_29125 [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 236

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 48  DRVDERNDALLIRLSPDRIESFKVQDGLIFNAVRFGDPVEI 88
           ++VD RND + +RL+ + +  F V DGL F  VRFG  VE 
Sbjct: 174 EQVDTRNDNMYMRLAINDLTGFPVSDGLHFRQVRFGIQVEF 214


>ref|YP_004227933.1| Copper-binding periplasmic protein CusF [Burkholderia sp. CCGE1001]
 gb|ADX54873.1| Copper binding periplasmic protein CusF [Burkholderia sp. CCGE1001]
          Length = 121

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 11/112 (9%)

Query: 1   VALCMAVLGPGATLAVPAALDEQQDAAVTLQAAMVHPQASETLRGVVDRVDERNDALLIR 60
           +A+C +    G T     A D    +++ +  +  H  +     G V +VD     L IR
Sbjct: 14  LAVCTSAYAGGNTHETSEAGDTSDASSMNMADSANHRMS----HGEVRKVDVAAGKLTIR 69

Query: 61  LSP------DRIE-SFKVQDGLIFNAVRFGDPVEIAVQSIAGFRTIVGLSKQ 105
             P      D +  +FKV+D  + + V+ GD ++   + + G  T++ L KQ
Sbjct: 70  HGPLENLGMDAMTMTFKVKDPAMLSQVKAGDKIDFVAEEVGGALTVIELHKQ 121


>ref|ZP_08823005.1| hypothetical protein ThidrDRAFT_1819 [Thiorhodococcus drewsii AZ1]
 gb|EGV31618.1| hypothetical protein ThidrDRAFT_1819 [Thiorhodococcus drewsii AZ1]
          Length = 190

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 40  SETLRGVVDRVDERNDALLIRLSPDRIESFKVQDGLIFNAVRFGDPV 86
           S T++GVV+ VD++   + +R  P  + +FKV+D  + +AV  GD V
Sbjct: 130 SVTIKGVVESVDQKASTVTVR-GPAEVRTFKVEDPALLDAVAPGDGV 175


>ref|ZP_02881343.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
 gb|EDT12772.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
          Length = 119

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 13/115 (11%)

Query: 1   VALCMAVLGPGATLAVPAALDEQQDAAVTLQAAMVHPQASETL-RGVVDRVDERNDALLI 59
           +A+C AV    AT      +     A+   Q+A V+  A++++  G V +VD     L I
Sbjct: 8   IAMCCAV-SVSATAYAAGDMGNMNMASGAQQSADVNADANKSMSHGEVKKVDTAAGKLTI 66

Query: 60  RLSPDRIES---------FKVQDGLIFNAVRFGDPVEIAVQSIAGFRTIVGLSKQ 105
           +  P  +E+         FKV+D  + + V  GD ++   + + G  T+  L KQ
Sbjct: 67  KHGP--LENLGMEAMTMVFKVKDPAMLSQVNVGDKIDFVAEEVDGSLTVTSLQKQ 119


>ref|YP_003642488.1| hypothetical protein Tint_0763 [Thiomonas intermedia K12]
 gb|ADG30158.1| conserved hypothetical protein [Thiomonas intermedia K12]
          Length = 128

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 30  LQAAMVHPQASETLRGVVDRVDERNDALLIRLSP-------DRIESFKVQDGLIFNAVRF 82
           +Q A    Q      GVV ++D  +  + +R  P           +++V+D  + + ++ 
Sbjct: 45  MQPAASSAQGEHQTEGVVRKIDAASGKITLRHGPIPALGMGAMTMNYRVRDKALLDGLKA 104

Query: 83  GDPVEIAVQSIAGFRTIVGLSKQ 105
           GD VE + Q I G  T++ L ++
Sbjct: 105 GDTVEFSAQQIDGAYTVLTLKRK 127