BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0028.p (186 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001239421.1| hypothetical protein BBta_3421 [Bradyrhizobi... 291 2e-77 ref|YP_001205799.1| putative high-affinity nickel-transporter (y... 289 2e-76 ref|YP_577888.1| high-affinity nickel-transporter [Nitrobacter h... 286 1e-75 ref|YP_001239635.1| hypothetical protein BBta_3645 [Bradyrhizobi... 278 2e-73 ref|YP_002501574.1| high-affinity nickel-transporter [Methylobac... 278 3e-73 >ref|YP_001239421.1| hypothetical protein BBta_3421 [Bradyrhizobium sp. BTAi1] gb|ABQ35515.1| putative membrane protein of unknown function with high-affinity nickel-transporter domain [Bradyrhizobium sp. BTAi1] Length = 353 Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 155/183 (84%), Positives = 168/183 (91%) Query: 2 TIRPDGSEQRFRFAGHGGYLESIDEIPEPHAFKARVSVRADMAEVLFEEHDHAHMDLGDE 61 T+RPDG+EQ F F G+LESI+EIPEPHAFKAR+ + + AE+LFEEH H HM+LGDE Sbjct: 169 TVRPDGAEQGFSFRLGSGHLESIEEIPEPHAFKARIGLAGETAEILFEEHAHDHMNLGDE 228 Query: 62 DDAHARAHAADIRKRFAGRTVTTWQIILFGLTGGLIPCPAAITVLLLCLQLKQFSLGFVL 121 DDAHARAHAADIRKRFAGRTVTT QI+LFGLTGGLIPCPAAITVLLLC+QLKQFSLGFVL Sbjct: 229 DDAHARAHAADIRKRFAGRTVTTAQIVLFGLTGGLIPCPAAITVLLLCIQLKQFSLGFVL 288 Query: 122 VLCFGIGLAITMVSAGVAAALSLRHVERHWAGFSRFAHRAPYVSAALIVLVGLYTGWLGL 181 VLCFGIGLAITMVSAGV AALSLRHVERHW+GFSRFAHRAPYVSAALIVLVGLYTGWLGL Sbjct: 289 VLCFGIGLAITMVSAGVLAALSLRHVERHWSGFSRFAHRAPYVSAALIVLVGLYTGWLGL 348 Query: 182 HGI 184 H + Sbjct: 349 HEV 351 >ref|YP_001205799.1| putative high-affinity nickel-transporter (yohM-like protein) [Bradyrhizobium sp. ORS 278] emb|CAL77574.1| conserved hypothetical protein; putative membrane protein; putative High-affinity nickel-transporter (yohM-like protein) [Bradyrhizobium sp. ORS 278] Length = 354 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 152/183 (83%), Positives = 167/183 (91%) Query: 2 TIRPDGSEQRFRFAGHGGYLESIDEIPEPHAFKARVSVRADMAEVLFEEHDHAHMDLGDE 61 T+R DG EQRF F G YLESI+EIPEPHAFKAR+++ D AE+L+EEH H HMDLG+E Sbjct: 170 TLRGDGGEQRFSFRSDGSYLESIEEIPEPHAFKARIALAGDTAEMLYEEHAHDHMDLGEE 229 Query: 62 DDAHARAHAADIRKRFAGRTVTTWQIILFGLTGGLIPCPAAITVLLLCLQLKQFSLGFVL 121 DDAHARAHAADIR+RFAGRTVTT QI+LFGL+GGLIPCPAAITVLLLC+QL+QFSLGFVL Sbjct: 230 DDAHARAHAADIRRRFAGRTVTTAQIVLFGLSGGLIPCPAAITVLLLCIQLQQFSLGFVL 289 Query: 122 VLCFGIGLAITMVSAGVAAALSLRHVERHWAGFSRFAHRAPYVSAALIVLVGLYTGWLGL 181 VLCFGIGLAITMVSAGV AALSLRHVER W+GFSRFAHRAPYVSAALIVLVGLYTGWLGL Sbjct: 290 VLCFGIGLAITMVSAGVLAALSLRHVERRWSGFSRFAHRAPYVSAALIVLVGLYTGWLGL 349 Query: 182 HGI 184 H + Sbjct: 350 HEV 352 >ref|YP_577888.1| high-affinity nickel-transporter [Nitrobacter hamburgensis X14] gb|ABE63428.1| high-affinity nickel-transporter [Nitrobacter hamburgensis X14] Length = 356 Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 151/185 (81%), Positives = 163/185 (88%) Query: 2 TIRPDGSEQRFRFAGHGGYLESIDEIPEPHAFKARVSVRADMAEVLFEEHDHAHMDLGDE 61 TIR DGS Q FRF G YLES+DEIPEPHAFKA V V + AE++FEEHDHAHMDLG+E Sbjct: 172 TIRSDGSRQSFRFVGERDYLESVDEIPEPHAFKAHVMVGGNTAELVFEEHDHAHMDLGEE 231 Query: 62 DDAHARAHAADIRKRFAGRTVTTWQIILFGLTGGLIPCPAAITVLLLCLQLKQFSLGFVL 121 DDAHARAHAADIRKRFAGRTVTT QI+LFGLTGGLIPCPAAITVLLLC+QLKQFSLGF L Sbjct: 232 DDAHARAHAADIRKRFAGRTVTTAQIVLFGLTGGLIPCPAAITVLLLCIQLKQFSLGFAL 291 Query: 122 VLCFGIGLAITMVSAGVAAALSLRHVERHWAGFSRFAHRAPYVSAALIVLVGLYTGWLGL 181 VLCFGIGLA TMVSAGV AAL +RHVERHW+GF+RFAHRAPYVSAALIV VG YTGW+G Sbjct: 292 VLCFGIGLAATMVSAGVVAALGIRHVERHWSGFTRFAHRAPYVSAALIVCVGFYTGWIGW 351 Query: 182 HGITA 186 H I + Sbjct: 352 HEIVS 356 >ref|YP_001239635.1| hypothetical protein BBta_3645 [Bradyrhizobium sp. BTAi1] gb|ABQ35729.1| putative membrane protein of unknown function with high-affinity nickel-transporter domain [Bradyrhizobium sp. BTAi1] Length = 354 Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 146/182 (80%), Positives = 163/182 (89%) Query: 1 VTIRPDGSEQRFRFAGHGGYLESIDEIPEPHAFKARVSVRADMAEVLFEEHDHAHMDLGD 60 T+R DGSEQ F F GYLES +EIPEPHAFKAR+++ D+AE+ F EHDH HMDLG+ Sbjct: 169 TTVRADGSEQSFAFVDRDGYLESTEEIPEPHAFKARIALAGDVAEMRFGEHDHDHMDLGE 228 Query: 61 EDDAHARAHAADIRKRFAGRTVTTWQIILFGLTGGLIPCPAAITVLLLCLQLKQFSLGFV 120 +DDAHARAHAADI++RFAGRTVTT QI+LFGLTGGLIPCPAAITVLLLC+QLKQFSLGF Sbjct: 229 QDDAHARAHAADIQRRFAGRTVTTPQIVLFGLTGGLIPCPAAITVLLLCIQLKQFSLGFA 288 Query: 121 LVLCFGIGLAITMVSAGVAAALSLRHVERHWAGFSRFAHRAPYVSAALIVLVGLYTGWLG 180 LVLCFG+GLAITMVSAGV AAL +RHVERHW+GFSRFAHRAPYVSAALI LVGLYTGW+G Sbjct: 289 LVLCFGLGLAITMVSAGVVAALGIRHVERHWSGFSRFAHRAPYVSAALIALVGLYTGWIG 348 Query: 181 LH 182 LH Sbjct: 349 LH 350 >ref|YP_002501574.1| high-affinity nickel-transporter [Methylobacterium nodulans ORS 2060] gb|ACL61271.1| high-affinity nickel-transporter [Methylobacterium nodulans ORS 2060] Length = 376 Score = 278 bits (711), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 138/187 (73%), Positives = 155/187 (82%), Gaps = 4/187 (2%) Query: 2 TIRPDGSEQRFRFAGHGGYLESIDEIPEPHAFKARV----SVRADMAEVLFEEHDHAHMD 57 T+RPDG+ QRF FA G +LES++EIPEPHAF AR+ A+ E +FEEHDHAHM+ Sbjct: 167 TLRPDGTRQRFAFADRGAFLESLEEIPEPHAFTARLHRDGPAGAETHEQVFEEHDHAHMN 226 Query: 58 LGDEDDAHARAHAADIRKRFAGRTVTTWQIILFGLTGGLIPCPAAITVLLLCLQLKQFSL 117 LGDEDDAHARAHA DIR+RFAGRTVTT QI+LFGLTGGLIPCPAAITVLLLC+QLKQFSL Sbjct: 227 LGDEDDAHARAHAQDIRRRFAGRTVTTGQIVLFGLTGGLIPCPAAITVLLLCIQLKQFSL 286 Query: 118 GFVLVLCFGIGLAITMVSAGVAAALSLRHVERHWAGFSRFAHRAPYVSAALIVLVGLYTG 177 GF LV+CF IGLA+TMVSAGV AALS+R V R W+G A RAPY SAALIVLVGLYTG Sbjct: 287 GFALVVCFSIGLALTMVSAGVLAALSVRQVSRRWSGLGIIARRAPYASAALIVLVGLYTG 346 Query: 178 WLGLHGI 184 WLG G+ Sbjct: 347 WLGWQGL 353