BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0018.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767828.1| F0F1 ATP synthase subunit A [Bradyrhizobium jap... 458 e-127 gb|AAF78800.1| Fo ATP synthase subunit A [Bradyrhizobium japonicum] 456 e-126 ref|NP_946199.1| F0F1 ATP synthase subunit A [Rhodopseudomonas p... 392 e-107 ref|YP_488165.1| F0F1 ATP synthase subunit A [Rhodopseudomonas p... 392 e-107 ref|YP_004107372.1| ATP synthase F0 subunit A [Rhodopseudomonas ... 390 e-107 >ref|NP_767828.1| F0F1 ATP synthase subunit A [Bradyrhizobium japonicum USDA 110] sp|Q89V68.1|ATP6_BRAJA RecName: Full=ATP synthase subunit a; AltName: Full=ATP synthase F0 sector subunit a; AltName: Full=F-ATPase subunit 6 dbj|BAC46453.1| FoF1 ATP synthase A chain [Bradyrhizobium japonicum USDA 110] Length = 249 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 230/249 (92%), Positives = 244/249 (97%) Query: 1 MKIDPIHQFNIEPLFTLGHIGNHTIAFTNSSLFMLIAVLLIALLMLASGRELVPGRLQSV 60 MKIDPIHQFNIEPLFT+GHIG+ TIAFTNSSL+MLIAV +I+LLMLASG +LVPGRLQSV Sbjct: 1 MKIDPIHQFNIEPLFTIGHIGHQTIAFTNSSLYMLIAVAIISLLMLASGAQLVPGRLQSV 60 Query: 61 AEISYEFVATTIRSTAGAEGMKFFPLIFSLFMFLCVSNLVGVIPYTFTIASHLIVTAALA 120 AEISYEFVA+TIRSTAG+EGMKFFPLIFSLFMF+CVSNL+G+IPYTFTI+SHLIVTAALA Sbjct: 61 AEISYEFVASTIRSTAGSEGMKFFPLIFSLFMFICVSNLIGIIPYTFTISSHLIVTAALA 120 Query: 121 LLVFFTVLIYGVYKNGLKFFSIFVPHGVPIYILPLVMFIEILSFFLRPVSHSVRLFANML 180 LLVFFTVLIYGV KNGLKFFSIFVPHGVP YILPLVMFIEILSFFLRPVSHSVRLFANML Sbjct: 121 LLVFFTVLIYGVAKNGLKFFSIFVPHGVPGYILPLVMFIEILSFFLRPVSHSVRLFANML 180 Query: 181 AGHIALKVFAGFVAMLGFSLGALGWVGGVLPLALTIALYALELLVAFLQAYVFAILTCIY 240 AGHIALKVFAGFVAMLGFSLGALGWVGGVLPLALT+ALYALE+LVAFLQAYVFAILTCIY Sbjct: 181 AGHIALKVFAGFVAMLGFSLGALGWVGGVLPLALTVALYALEILVAFLQAYVFAILTCIY 240 Query: 241 LNDAIHPGH 249 LNDAIHPGH Sbjct: 241 LNDAIHPGH 249 >gb|AAF78800.1| Fo ATP synthase subunit A [Bradyrhizobium japonicum] Length = 279 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 230/249 (92%), Positives = 244/249 (97%) Query: 1 MKIDPIHQFNIEPLFTLGHIGNHTIAFTNSSLFMLIAVLLIALLMLASGRELVPGRLQSV 60 MKIDPIHQFNIEPLFT+GHIG+ TIAFTNSSL+MLIAV +I+LLMLASG +LVPGRLQSV Sbjct: 31 MKIDPIHQFNIEPLFTIGHIGHQTIAFTNSSLYMLIAVAIISLLMLASGAQLVPGRLQSV 90 Query: 61 AEISYEFVATTIRSTAGAEGMKFFPLIFSLFMFLCVSNLVGVIPYTFTIASHLIVTAALA 120 AEISYEFVA+TIRSTAG+EGMKFFPLIFSLFMF+CVSNL+G+IPYTFTI+SHLIVTAALA Sbjct: 91 AEISYEFVASTIRSTAGSEGMKFFPLIFSLFMFICVSNLIGIIPYTFTISSHLIVTAALA 150 Query: 121 LLVFFTVLIYGVYKNGLKFFSIFVPHGVPIYILPLVMFIEILSFFLRPVSHSVRLFANML 180 LLVFFTVLIYGV KNGLKFFSIFVPHGVP YILPLVMFIEILSFFLRPVSHSVRLFANML Sbjct: 151 LLVFFTVLIYGVAKNGLKFFSIFVPHGVPGYILPLVMFIEILSFFLRPVSHSVRLFANML 210 Query: 181 AGHIALKVFAGFVAMLGFSLGALGWVGGVLPLALTIALYALELLVAFLQAYVFAILTCIY 240 AGHIALKVFAGFVAMLGFSLGALGWVGGVLPLALT+ALYALE+LVAFLQAYVFAILTCIY Sbjct: 211 AGHIALKVFAGFVAMLGFSLGALGWVGGVLPLALTVALYALEILVAFLQAYVFAILTCIY 270 Query: 241 LNDAIHPGH 249 LNDAIHPGH Sbjct: 271 LNDAIHPGH 279 >ref|NP_946199.1| F0F1 ATP synthase subunit A [Rhodopseudomonas palustris CGA009] ref|YP_001989947.1| F0F1 ATP synthase subunit A [Rhodopseudomonas palustris TIE-1] sp|Q6NBI2.1|ATP6_RHOPA RecName: Full=ATP synthase subunit a; AltName: Full=ATP synthase F0 sector subunit a; AltName: Full=F-ATPase subunit 6 sp|B3QF37.1|ATP6_RHOPT RecName: Full=ATP synthase subunit a; AltName: Full=ATP synthase F0 sector subunit a; AltName: Full=F-ATPase subunit 6 emb|CAE26290.1| Fo ATP synthase subunit A [Rhodopseudomonas palustris CGA009] gb|ACE99471.1| ATP synthase F0, A subunit [Rhodopseudomonas palustris TIE-1] Length = 248 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 197/249 (79%), Positives = 218/249 (87%), Gaps = 1/249 (0%) Query: 1 MKIDPIHQFNIEPLFTLGHIGNHTIAFTNSSLFMLIAVLLIALLMLASGRELVPGRLQSV 60 M DPIHQF I LFTLGH+G IAFTNSS +M V LIA+LML GR+LVPGRLQS+ Sbjct: 1 MAADPIHQFQITKLFTLGHVGGQEIAFTNSSAYMFGTVALIAILMLVPGRQLVPGRLQSI 60 Query: 61 AEISYEFVATTIRSTAGAEGMKFFPLIFSLFMFLCVSNLVGVIPYTFTIASHLIVTAALA 120 AE+SYEFVA IRSTAG EG+KFFPL+FSLFMF+ VSNL+G++PYTFT++SHLIVT ALA Sbjct: 61 AELSYEFVANMIRSTAGKEGLKFFPLVFSLFMFIAVSNLIGIVPYTFTVSSHLIVTVALA 120 Query: 121 LLVFFTVLIYGVYKNGLKFFSIFVPHGVPIYILPLVMFIEILSFFLRPVSHSVRLFANML 180 LLVFFTVLIYG KNGLKFF +FVP GVPIYILPLV+FIE++SFFL+PVSHSVRLFANML Sbjct: 121 LLVFFTVLIYGFSKNGLKFFKLFVPSGVPIYILPLVVFIEVISFFLKPVSHSVRLFANML 180 Query: 181 AGHIALKVFAGFVAMLGFSLGALGWVGGVLPLALTIALYALELLVAFLQAYVFAILTCIY 240 AGHIALKVFA FVAMLG +LG +GW G VLPL LTIAL ALELLVAFLQAYVFAILTCIY Sbjct: 181 AGHIALKVFASFVAMLG-ALGVVGWFGAVLPLGLTIALTALELLVAFLQAYVFAILTCIY 239 Query: 241 LNDAIHPGH 249 LNDAIHPGH Sbjct: 240 LNDAIHPGH 248 >ref|YP_488165.1| F0F1 ATP synthase subunit A [Rhodopseudomonas palustris HaA2] sp|Q2IRA6.1|ATP6_RHOP2 RecName: Full=ATP synthase subunit a; AltName: Full=ATP synthase F0 sector subunit a; AltName: Full=F-ATPase subunit 6 gb|ABD09254.1| ATP synthase F0, A subunit [Rhodopseudomonas palustris HaA2] Length = 248 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 195/249 (78%), Positives = 219/249 (87%), Gaps = 1/249 (0%) Query: 1 MKIDPIHQFNIEPLFTLGHIGNHTIAFTNSSLFMLIAVLLIALLMLASGRELVPGRLQSV 60 M DPIHQF I LF+LGHIG IAFTNSS +M AV +IA++MLA GR+LVPGR QSV Sbjct: 1 MAADPIHQFQITKLFSLGHIGGQEIAFTNSSAYMFAAVAIIAVMMLAPGRQLVPGRFQSV 60 Query: 61 AEISYEFVATTIRSTAGAEGMKFFPLIFSLFMFLCVSNLVGVIPYTFTIASHLIVTAALA 120 AE+SYEFVA IRSTAG EG+KFFPL+FSLFMF+ VSNLVG+IPYTFT++SHLIVT LA Sbjct: 61 AELSYEFVANMIRSTAGKEGLKFFPLVFSLFMFIAVSNLVGIIPYTFTVSSHLIVTVTLA 120 Query: 121 LLVFFTVLIYGVYKNGLKFFSIFVPHGVPIYILPLVMFIEILSFFLRPVSHSVRLFANML 180 +LVF TVL+YG+ KNGLKFF +FVP GVPIYILPLV+FIE++SFFL+PVSHSVRLFANML Sbjct: 121 MLVFVTVLVYGLAKNGLKFFKLFVPSGVPIYILPLVVFIEVISFFLKPVSHSVRLFANML 180 Query: 181 AGHIALKVFAGFVAMLGFSLGALGWVGGVLPLALTIALYALELLVAFLQAYVFAILTCIY 240 AGHIALKVFA F+AMLG +LG +GWVG VLPL LTIAL ALELLVAFLQAYVFAILTCIY Sbjct: 181 AGHIALKVFASFIAMLG-ALGVVGWVGAVLPLGLTIALTALELLVAFLQAYVFAILTCIY 239 Query: 241 LNDAIHPGH 249 LNDAIHPGH Sbjct: 240 LNDAIHPGH 248 >ref|YP_004107372.1| ATP synthase F0 subunit A [Rhodopseudomonas palustris DX-1] gb|ADU42639.1| ATP synthase F0, A subunit [Rhodopseudomonas palustris DX-1] Length = 248 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 196/249 (78%), Positives = 217/249 (87%), Gaps = 1/249 (0%) Query: 1 MKIDPIHQFNIEPLFTLGHIGNHTIAFTNSSLFMLIAVLLIALLMLASGRELVPGRLQSV 60 M DPIHQF I LFTLGH+G IAFTNSS +M V LIA+LML GR+LVPGR QS+ Sbjct: 1 MAADPIHQFQITKLFTLGHVGGQEIAFTNSSAYMFGTVALIAILMLVPGRQLVPGRFQSI 60 Query: 61 AEISYEFVATTIRSTAGAEGMKFFPLIFSLFMFLCVSNLVGVIPYTFTIASHLIVTAALA 120 AE+SYEFVA IRSTAG EG+KFFPL+FSLFMF+ VSNL+G++PYTFT++SHLIVT ALA Sbjct: 61 AELSYEFVANMIRSTAGKEGLKFFPLVFSLFMFIAVSNLIGIVPYTFTVSSHLIVTVALA 120 Query: 121 LLVFFTVLIYGVYKNGLKFFSIFVPHGVPIYILPLVMFIEILSFFLRPVSHSVRLFANML 180 LLVFFTVLIYG KNGLKFF +FVP GVPIYILPLV+FIE++SFFL+PVSHSVRLFANML Sbjct: 121 LLVFFTVLIYGFSKNGLKFFKLFVPSGVPIYILPLVVFIEVISFFLKPVSHSVRLFANML 180 Query: 181 AGHIALKVFAGFVAMLGFSLGALGWVGGVLPLALTIALYALELLVAFLQAYVFAILTCIY 240 AGHIALKVFA FVAMLG +LG +GW G VLPL LTIAL ALELLVAFLQAYVFAILTCIY Sbjct: 181 AGHIALKVFASFVAMLG-ALGVVGWFGAVLPLGLTIALTALELLVAFLQAYVFAILTCIY 239 Query: 241 LNDAIHPGH 249 LNDAIHPGH Sbjct: 240 LNDAIHPGH 248