BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0106.0011.p         (224 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767834.1| two-component response regulator [Bradyrhizobiu...   402   e-110
ref|ZP_08628267.1| transcriptional regulator, LuxR family [Brady...   400   e-110
gb|AAF78795.1| putative two-component system transcriptional res...   399   e-109
ref|YP_001237019.1| two component LuxR family transcriptional re...   393   e-107
ref|YP_001208499.1| two-component LuxR family transcriptional re...   390   e-107

>ref|NP_767834.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC46459.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 223

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/219 (91%), Positives = 210/219 (95%)

Query: 3   TAANTHLVIADDHPLFRDALRQAVSSVVSSATISEAGSFEDLTALLERDSEVDLILLDLS 62
            A +THLVIADDHPLFRDALRQAV+SV++SA I EAGSFEDLT LLE+ S+VDLILLDLS
Sbjct: 2   NAPSTHLVIADDHPLFRDALRQAVASVLTSARIDEAGSFEDLTKLLEQTSDVDLILLDLS 61

Query: 63  MPGISGFSGLIYLRAQYPAIPVVIVSASDDAGTIRRSLDFGASGFIPKRFGVETLRDAIM 122
           MPGISGFSGLIYLRAQYPAIPVVIVSASDD+ TIRRSLDFGASGFIPKRFGVETLRDAI+
Sbjct: 62  MPGISGFSGLIYLRAQYPAIPVVIVSASDDSATIRRSLDFGASGFIPKRFGVETLRDAIL 121

Query: 123 KVMEGDVWVPPDTDLSAAGDPDMTRLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELGVS 182
           KVMEGDVWVP DTDLSAA DPDMTRLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELGVS
Sbjct: 122 KVMEGDVWVPADTDLSAATDPDMTRLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELGVS 181

Query: 183 EATIKAHVSAILQKLGVESRTQAVIAAAKIAGGQWRQGT 221
           EATIKAHVSAILQKLGVESRTQAVIAAA+IAGGQW+QGT
Sbjct: 182 EATIKAHVSAILQKLGVESRTQAVIAAARIAGGQWKQGT 220


>ref|ZP_08628267.1| transcriptional regulator, LuxR family [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP09176.1| transcriptional regulator, LuxR family [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 224

 Score =  400 bits (1028), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/222 (88%), Positives = 211/222 (95%)

Query: 1   MTTAANTHLVIADDHPLFRDALRQAVSSVVSSATISEAGSFEDLTALLERDSEVDLILLD 60
           MT AANTHLVIADDHPLFRDALRQAV+SVV++A + EAGSFE+LT LLER+S+VDLILLD
Sbjct: 1   MTIAANTHLVIADDHPLFRDALRQAVASVVATAQVDEAGSFEELTDLLERESDVDLILLD 60

Query: 61  LSMPGISGFSGLIYLRAQYPAIPVVIVSASDDAGTIRRSLDFGASGFIPKRFGVETLRDA 120
           L+MPGISGFSGLIYLRAQ+PAIPVVIVSASDDAGTIRRS+DFGASGFIPKRFGVETLR+A
Sbjct: 61  LAMPGISGFSGLIYLRAQFPAIPVVIVSASDDAGTIRRSMDFGASGFIPKRFGVETLREA 120

Query: 121 IMKVMEGDVWVPPDTDLSAAGDPDMTRLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELG 180
           I KVM GDVWVP D DLSAA DPDMT+LRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELG
Sbjct: 121 IGKVMNGDVWVPADVDLSAAADPDMTKLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELG 180

Query: 181 VSEATIKAHVSAILQKLGVESRTQAVIAAAKIAGGQWRQGTP 222
           VSEATIKAHVSAILQKLGVESRTQAVIAAA+IAGG+W+Q  P
Sbjct: 181 VSEATIKAHVSAILQKLGVESRTQAVIAAARIAGGEWKQADP 222


>gb|AAF78795.1| putative two-component system transcriptional response regulator
           TcsR [Bradyrhizobium japonicum]
          Length = 223

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/219 (90%), Positives = 210/219 (95%)

Query: 3   TAANTHLVIADDHPLFRDALRQAVSSVVSSATISEAGSFEDLTALLERDSEVDLILLDLS 62
            A +THLVIADDHPLFRDALRQAV+SV++SA I EAGSFEDLT LLE+ S+VDLILLDLS
Sbjct: 2   NAPSTHLVIADDHPLFRDALRQAVASVLTSARIDEAGSFEDLTKLLEQTSDVDLILLDLS 61

Query: 63  MPGISGFSGLIYLRAQYPAIPVVIVSASDDAGTIRRSLDFGASGFIPKRFGVETLRDAIM 122
           MPGISGFSGLIYLRAQYPAIPVVIVSASDD+ TIRRSLDFGASGFIPKRFGVE++RDAI+
Sbjct: 62  MPGISGFSGLIYLRAQYPAIPVVIVSASDDSATIRRSLDFGASGFIPKRFGVESVRDAIL 121

Query: 123 KVMEGDVWVPPDTDLSAAGDPDMTRLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELGVS 182
           KVMEGDVWVP DTDLSAA DPDMTRLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELGVS
Sbjct: 122 KVMEGDVWVPADTDLSAATDPDMTRLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELGVS 181

Query: 183 EATIKAHVSAILQKLGVESRTQAVIAAAKIAGGQWRQGT 221
           EATIKAHVSAILQKLGVESRTQAVIAAA+IAGGQW+QGT
Sbjct: 182 EATIKAHVSAILQKLGVESRTQAVIAAARIAGGQWKQGT 220


>ref|YP_001237019.1| two component LuxR family transcriptional regulator [Bradyrhizobium
           sp. BTAi1]
 gb|ABQ33113.1| two component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 224

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/219 (87%), Positives = 205/219 (93%)

Query: 4   AANTHLVIADDHPLFRDALRQAVSSVVSSATISEAGSFEDLTALLERDSEVDLILLDLSM 63
           AA THLVIADDHPLFR+ALRQAV+SV++ A + EAGSFEDLT LLE+DSEVDL+LLDL+M
Sbjct: 3   AATTHLVIADDHPLFRNALRQAVTSVLAEAVVDEAGSFEDLTTLLEKDSEVDLVLLDLTM 62

Query: 64  PGISGFSGLIYLRAQYPAIPVVIVSASDDAGTIRRSLDFGASGFIPKRFGVETLRDAIMK 123
           PGISGFSGLIYLRAQYPAIPVVIVSASDD  TIRRSLDFGASGFIPKRFGV+TLRDAI K
Sbjct: 63  PGISGFSGLIYLRAQYPAIPVVIVSASDDGATIRRSLDFGASGFIPKRFGVDTLRDAITK 122

Query: 124 VMEGDVWVPPDTDLSAAGDPDMTRLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELGVSE 183
           VM+GDVWVPPDTDL+A  DP+MTRLRDRLVTLTPQQVRVLMMLS+GLLNKQIAYELGVSE
Sbjct: 123 VMDGDVWVPPDTDLAAGADPEMTRLRDRLVTLTPQQVRVLMMLSQGLLNKQIAYELGVSE 182

Query: 184 ATIKAHVSAILQKLGVESRTQAVIAAAKIAGGQWRQGTP 222
           ATIKAHVSAILQKLGVESRTQAVIAAAKIAG  WRQ  P
Sbjct: 183 ATIKAHVSAILQKLGVESRTQAVIAAAKIAGSAWRQDAP 221


>ref|YP_001208499.1| two-component LuxR family transcriptional regulator [Bradyrhizobium
           sp. ORS 278]
 emb|CAL80284.1| putative two-component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. ORS 278]
          Length = 261

 Score =  390 bits (1003), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/219 (87%), Positives = 207/219 (94%)

Query: 4   AANTHLVIADDHPLFRDALRQAVSSVVSSATISEAGSFEDLTALLERDSEVDLILLDLSM 63
           AA+THLVIADDHPLFR+ALRQAV+SV++ A + EAGSFEDLTALLE+DSEVDL+LLDL+M
Sbjct: 40  AASTHLVIADDHPLFRNALRQAVASVLAEAVVDEAGSFEDLTALLEKDSEVDLVLLDLTM 99

Query: 64  PGISGFSGLIYLRAQYPAIPVVIVSASDDAGTIRRSLDFGASGFIPKRFGVETLRDAIMK 123
           PGISGFSGLIYLRAQYPAIPVVIVSASDD  TIRRSLDFGASGFIPKRFGV+TLRDAI K
Sbjct: 100 PGISGFSGLIYLRAQYPAIPVVIVSASDDGATIRRSLDFGASGFIPKRFGVDTLRDAIQK 159

Query: 124 VMEGDVWVPPDTDLSAAGDPDMTRLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELGVSE 183
           VM+G+VWVPPDTDL+A  DP+MT+LRDRLVTLTPQQVRVLMMLS+GLLNKQIAYELGVSE
Sbjct: 160 VMDGEVWVPPDTDLAAGVDPEMTKLRDRLVTLTPQQVRVLMMLSQGLLNKQIAYELGVSE 219

Query: 184 ATIKAHVSAILQKLGVESRTQAVIAAAKIAGGQWRQGTP 222
           ATIKAHVSAILQKLGVESRTQAVIAAAKIAG  WRQ  P
Sbjct: 220 ATIKAHVSAILQKLGVESRTQAVIAAAKIAGSAWRQDVP 258