BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0009.p (361 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001772625.1| hypothetical protein M446_5908 [Methylobacte... 490 e-136 ref|YP_004156487.1| hypothetical protein Varpa_4206 [Variovorax ... 427 e-117 ref|YP_002945529.1| hypothetical protein Vapar_3646 [Variovorax ... 400 e-109 ref|YP_003979132.1| hypothetical protein AXYL_03097 [Achromobact... 280 3e-73 ref|ZP_06687779.1| conserved hypothetical protein [Achromobacter... 276 3e-72 >ref|YP_001772625.1| hypothetical protein M446_5908 [Methylobacterium sp. 4-46] gb|ACA20191.1| conserved hypothetical protein [Methylobacterium sp. 4-46] Length = 390 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 245/362 (67%), Positives = 305/362 (84%), Gaps = 3/362 (0%) Query: 1 MIVGLDEKLLWDDDGKPVLSAPGKDQVLIVDLADPENPKIAASLPLKNSVVGPPVNVAID 60 MIVG DEKL WD++GKPVLS G+D VLIVDL DPENPKIAA+LPLKNSVVGPPVN+AI+ Sbjct: 28 MIVGNDEKLNWDENGKPVLSPSGRDSVLIVDLEDPENPKIAANLPLKNSVVGPPVNLAIN 87 Query: 61 PTGTVALVADSVDVVKEGDALKQVPDNKIYVIDLKATPPKLAATIAGGKQPSGLSFSPDG 120 P+GT+ALVADSVDVVK+GDALKQVPD K+YVIDL+A+PPKL T+ GKQPSGL S DG Sbjct: 88 PSGTLALVADSVDVVKDGDALKQVPDTKLYVIDLEASPPKLLKTLEVGKQPSGLDISHDG 147 Query: 121 KMALVANRGDSSISVLSVNGTDVKITDTISMPDSVAHVAFAPDGKHALVARFPGHKISVL 180 MALVA R ++++ VLS+NG +V++T + + + V+HV F P+GK A+ ++F HK+++L Sbjct: 148 TMALVALRAENAVGVLSINGKNVELTQKVPVDELVSHVEFTPNGKTAIASKFVNHKVALL 207 Query: 181 DIAGD-KVTYAKIDLPAGQWPYNVAVTPNSKIALTSDNGNSGASDGSVDTASVIDLEAKP 239 I + KV+Y K DLP G WPYNV+V+P+ KIALT+DNG +GASDG+VDT SV+DLEA P Sbjct: 208 SIESNKKVSYNKQDLPVGLWPYNVSVSPDGKIALTADNGFAGASDGNVDTVSVVDLEATP 267 Query: 240 PRIIDRVVVGDGPEGLGVSPKGDLAVSVILRGSNM-KNAFFHEKNGSVSVLKIDGKKVTK 298 PR+ID+VVVGDGPEGL +SPKGD+AV+VI+ GSN K FF+ KNG+++V+KIDGK VTK Sbjct: 268 PRVIDKVVVGDGPEGLAISPKGDVAVAVIINGSNSGKKDFFYHKNGTLTVMKIDGKTVTK 327 Query: 299 TGD-IEVGGLPEAAVFTPDGKYILVGNYLSQDFSILKVDGTNVTDTGKRFQVPGHPASAG 357 + +E GGLPEAAVFTPDG+Y+LVGN+L QDFSI +VDG+NVTDTGKRF+VPGHPASA Sbjct: 328 IKEGLETGGLPEAAVFTPDGRYLLVGNFLDQDFSIYRVDGSNVTDTGKRFKVPGHPASAR 387 Query: 358 MG 359 MG Sbjct: 388 MG 389 >ref|YP_004156487.1| hypothetical protein Varpa_4206 [Variovorax paradoxus EPS] gb|ADU38376.1| hypothetical protein Varpa_4206 [Variovorax paradoxus EPS] Length = 392 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 213/357 (59%), Positives = 274/357 (76%), Gaps = 2/357 (0%) Query: 1 MIVGLDEKLLWDDDGKPVLSAPGKDQVLIVDL-ADPENPKIAASLPLKNSVVGPPVNVAI 59 MIV DEK W+D G +L G+D V ++D+ DP PK+ +L L N++ GPP N+AI Sbjct: 32 MIVANDEKQSWNDAGAVILGPMGRDTVQVLDIGTDPLAPKVVGTLQLDNTIAGPPTNLAI 91 Query: 60 DPTGTVALVADSVDVVKEGDALKQVPDNKIYVIDLKATPPKLAATIAGGKQPSGLSFSPD 119 P T+ALVA+S++VV+E KQVPDN+++VIDL TPPKL T+ GKQPSGLS + Sbjct: 92 TPGETLALVANSLNVVEENGVRKQVPDNRLFVIDLTTTPPKLIDTLTLGKQPSGLSINRA 151 Query: 120 GKMALVANRGDSSISVLSVNGTDVKITDTISMPDSVAHVAFAPDGKHALVARFPGHKISV 179 G +ALVANR D+S+SVL + G V + DT++M DSVAHV F PDGK ALVA+FP HKI++ Sbjct: 152 GTLALVANRADNSVSVLRIAGKKVTLIDTVAMNDSVAHVRFTPDGKRALVAKFPAHKIAL 211 Query: 180 LDIAGDKVTYAKIDLPAGQWPYNVAVTPNSKIALTSDNGNSGASDGSVDTASVIDLEAKP 239 L++ G+KV+Y K+DL AG WPYNV VTP+ K+ALT+DNGNSGASDG VDT SVIDLEA P Sbjct: 212 LEVNGEKVSYNKVDLAAGLWPYNVDVTPDGKLALTADNGNSGASDGQVDTVSVIDLEAAP 271 Query: 240 PRIIDRVVVGDGPEGLGVSPKGDLAVSVILRGSN-MKNAFFHEKNGSVSVLKIDGKKVTK 298 PR+ID+VVVGDGPEGL VSP G AV+VILRGSN KNA+F+ +NGSV +LKIDGKKVT+ Sbjct: 272 PRVIDKVVVGDGPEGLAVSPTGRHAVAVILRGSNSAKNAYFYNRNGSVVLLKIDGKKVTR 331 Query: 299 TGDIEVGGLPEAAVFTPDGKYILVGNYLSQDFSILKVDGTNVTDTGKRFQVPGHPAS 355 ++ V GLPE AV++ DGK++ VGN++ QD +IL+VDG + TGK F++ GHPA+ Sbjct: 332 ANEVVVRGLPEGAVWSADGKFLYVGNFIDQDITILRVDGDTLVPTGKSFELQGHPAA 388 >ref|YP_002945529.1| hypothetical protein Vapar_3646 [Variovorax paradoxus S110] gb|ACS20263.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 398 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/357 (58%), Positives = 272/357 (76%), Gaps = 2/357 (0%) Query: 1 MIVGLDEKLLWDDDGKPVLSAPGKDQVLIVDL-ADPENPKIAASLPLKNSVVGPPVNVAI 59 M+V DEK W D G +L+ G+D V ++D+ DP P++ SL L N++ GPPVN+AI Sbjct: 35 MLVANDEKQSWSDAGAVILAPMGRDTVQVLDIGTDPLAPRLVGSLQLDNTIAGPPVNLAI 94 Query: 60 DPTGTVALVADSVDVVKEGDALKQVPDNKIYVIDLKATPPKLAATIAGGKQPSGLSFSPD 119 P T+ALVA+S++VV+E +QVPDN+++VIDL TPP+L T+ GKQPSGLS + Sbjct: 95 TPGETLALVANSLNVVEENGVRRQVPDNRLFVIDLSTTPPRLIDTLTVGKQPSGLSINRV 154 Query: 120 GKMALVANRGDSSISVLSVNGTDVKITDTISMPDSVAHVAFAPDGKHALVARFPGHKISV 179 G +ALVANR D+S+SVL + G V + DT++M DSVAHV F PDGK AL A+F HKI++ Sbjct: 155 GNLALVANRADNSVSVLRIAGKQVTLIDTVAMGDSVAHVRFTPDGKRALAAKFTSHKIAL 214 Query: 180 LDIAGDKVTYAKIDLPAGQWPYNVAVTPNSKIALTSDNGNSGASDGSVDTASVIDLEAKP 239 L++ G+KV+Y K+DL AG WPYNV VTP+ K+ALT+DNGNSGASDG VDT SVIDLEA P Sbjct: 215 LEVNGEKVSYNKVDLAAGLWPYNVDVTPDGKLALTADNGNSGASDGQVDTVSVIDLEAVP 274 Query: 240 PRIIDRVVVGDGPEGLGVSPKGDLAVSVILRGSN-MKNAFFHEKNGSVSVLKIDGKKVTK 298 PR++D+VVVGDGPEGL VSP G AV+VILRGSN KNA+F+ +NGSV +LKIDGKKV++ Sbjct: 275 PRVVDKVVVGDGPEGLAVSPTGKHAVAVILRGSNSAKNAYFYNRNGSVVLLKIDGKKVSR 334 Query: 299 TGDIEVGGLPEAAVFTPDGKYILVGNYLSQDFSILKVDGTNVTDTGKRFQVPGHPAS 355 ++ V GLPE AV++ DGKY+ VGN++ QD +IL+VDG + TGK F + GHPA+ Sbjct: 335 ANEVVVRGLPEGAVWSADGKYLYVGNFIDQDITILRVDGDTLVPTGKSFALQGHPAA 391 >ref|YP_003979132.1| hypothetical protein AXYL_03097 [Achromobacter xylosoxidans A8] gb|ADP16417.1| hypothetical protein AXYL_03097 [Achromobacter xylosoxidans A8] Length = 378 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 154/364 (42%), Positives = 220/364 (60%), Gaps = 10/364 (2%) Query: 1 MIVGLDEKLLWDDDGKPVLSAPGKDQVLIVDL-ADPENPKIAASLPLKNSVVGPPVNVAI 59 ++VG D+K+ WDD G+ APG D + + D A+P P + A+L L NS+ GPPVN+A+ Sbjct: 10 LLVGNDQKVTWDD-GQIRFLAPGNDSLCVYDAGANPAAPVLVATLSLPNSLFGPPVNLAV 68 Query: 60 DPTGTVALVADSVDVVKEGDALKQVPD--NKIYVIDLKATPPKLAATIAGGKQPSGLSFS 117 P + L+ADS+D D P+ +YVIDL+A PP + + G QPSGL+ + Sbjct: 69 TPDQRLGLIADSMDWRARADGAGWQPEPGRGLYVIDLEANPPAIVQRLEVGLQPSGLAIN 128 Query: 118 PDGKMALVANRGDSSISVLSVNGTDVKITDTISMPDSVAHVAFAPDGKHALVARFPGHKI 177 G +ALVAN+ S+SVL + G ++ + M V V+FA DG+ A V + H++ Sbjct: 129 RAGTLALVANKAGRSVSVLRIAGKRAEVCGEVDMGTPVVAVSFAADGRRAFVVKTDSHRL 188 Query: 178 SVLDI----AGDKVTY-AKIDLPAGQWPYNVAVTPNSKIALTSDNGNSGASDGSVDTASV 232 +L I A VT+ DL G P+N+ V+PN +AL D G+ ASDG D+ SV Sbjct: 189 GLLRIDESGANPIVTHDPAEDLTTGLVPFNLVVSPNGALALVVDMGSPTASDGHADSVSV 248 Query: 233 IDLEAKPPRIIDRVVVGDGPEGLGVSPKGDLAVSVILRGSNM-KNAFFHEKNGSVSVLKI 291 +DL A PPR+IDRV+V DGPEG+ +SP G A I++GSN +A+FH G + +L+I Sbjct: 249 VDLRADPPRVIDRVMVEDGPEGIAISPDGRYAAVAIVQGSNNPSSAWFHHPRGQIVLLRI 308 Query: 292 DGKKVTKTGDIEVGGLPEAAVFTPDGKYILVGNYLSQDFSILKVDGTNVTDTGKRFQVPG 351 DG+ VT+ G EVG LPE F+PD +Y+ VGN+L + +L V ++DTG R +PG Sbjct: 309 DGQSVTRAGAAEVGALPEGVAFSPDSRYLYVGNFLDAEMQVLAVGDHGLSDTGTRIALPG 368 Query: 352 HPAS 355 PAS Sbjct: 369 RPAS 372 >ref|ZP_06687779.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gb|EFF75224.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 379 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 153/364 (42%), Positives = 221/364 (60%), Gaps = 10/364 (2%) Query: 1 MIVGLDEKLLWDDDGKPVLSAPGKDQVLIVDLA-DPENPKIAASLPLKNSVVGPPVNVAI 59 ++VG DEK+ WDD G PG D + I + A DP P++ ASLPL NS+ GPPVN+A+ Sbjct: 11 LLVGNDEKVTWDD-GHIRFKPPGHDTLSIFETAADPAAPRLVASLPLPNSLFGPPVNLAV 69 Query: 60 DPTGTVALVADSVD--VVKEGDALKQVPDNKIYVIDLKATPPKLAATIAGGKQPSGLSFS 117 P +AL+ADS+D +G + + P +YV+DL A PP + T+ G QPSGLS + Sbjct: 70 TPDQRLALIADSMDWPARADGASWQPTPGRDLYVVDLAANPPAIVQTLQVGLQPSGLSIN 129 Query: 118 PDGKMALVANRGDSSISVLSVNGTDVKITDTISMPDSVAHVAFAPDGKHALVARFPGHKI 177 G +ALVAN+ S+SVL++ ++ + + V V+F+ DG+ A V + H++ Sbjct: 130 RAGTLALVANKAGQSVSVLALREGRAQVCGEVDVGTPVVAVSFSADGRRAFVVKTDTHRL 189 Query: 178 SVLDI----AGDKVTY-AKIDLPAGQWPYNVAVTPNSKIALTSDNGNSGASDGSVDTASV 232 VL I +VT+ DL G P+N+ V+P+ +AL D G+ ASDG D+ SV Sbjct: 190 GVLHIDETGPTPRVTHDPAEDLTTGLVPFNLVVSPDGALALVVDMGSPTASDGHADSISV 249 Query: 233 IDLEAKPPRIIDRVVVGDGPEGLGVSPKGDLAVSVILRGSNM-KNAFFHEKNGSVSVLKI 291 IDL A PPR+IDR++V DGPEG+ +SP G A I++GSN +A+FH G + + +I Sbjct: 250 IDLLATPPRVIDRLMVEDGPEGIAISPDGRYAAVAIVQGSNNPSSAWFHHPRGQIVLFRI 309 Query: 292 DGKKVTKTGDIEVGGLPEAAVFTPDGKYILVGNYLSQDFSILKVDGTNVTDTGKRFQVPG 351 DG +VT+ G I+VG LPE F+PD +++ VGN+L +L V + DTG +PG Sbjct: 310 DGMRVTRAGAIDVGALPEGIAFSPDSRFLYVGNFLDASLQVLAVGDNGLRDTGTGIALPG 369 Query: 352 HPAS 355 HPAS Sbjct: 370 HPAS 373