BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0008.p (1157 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767839.1| two-component hybrid sensor and regulator [Brad... 1886 0.0 ref|YP_001237027.1| putative two-component hybrid sensor histidi... 1877 0.0 ref|YP_001208492.1| putative two-component hybrid sensor histidi... 1867 0.0 ref|YP_534664.1| periplasmic sensor hybrid histidine kinase [Rho... 1781 0.0 ref|YP_575634.1| periplasmic sensor hybrid histidine kinase [Nit... 1752 0.0 >ref|NP_767839.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC46464.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 1169 Score = 1886 bits (4885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 939/1169 (80%), Positives = 1031/1169 (88%), Gaps = 12/1169 (1%) Query: 1 MLHDWGVIATAFAYIGLLFFIASRGDRTSPGERGRASQWIYPLSLAIYCTSWTFFGSVGF 60 MLHDWGVIA AF YIG LF +AS GDR SP GRAS IYPLSLAIYCTSWTFFGSVGF Sbjct: 1 MLHDWGVIAAAFGYIGFLFLVASHGDRRSPAGPGRASGLIYPLSLAIYCTSWTFFGSVGF 60 Query: 61 ATRTSIDFLAIYVGPIVMVGLCTPLLRRVIALAKSQNITSIADFIAARYGKSQAVAATVA 120 ATRTS DFLAIYVGPI+M+GL +LRRVI LAK+ NITSIADFI ARYGKSQAVAATVA Sbjct: 61 ATRTSTDFLAIYVGPILMIGLGAGVLRRVIQLAKAHNITSIADFIGARYGKSQAVAATVA 120 Query: 121 LIAIIGSVPYIALQLKAVAASLETILSEDQAFSKIPVIGDIALMVTLAMAVFAVLFGTRH 180 LIAIIGSVPYIALQLKAVA+SLETILSEDQAFS IP++GD+ALMVTLAMA FAVLFGTR Sbjct: 121 LIAIIGSVPYIALQLKAVASSLETILSEDQAFSHIPILGDMALMVTLAMAAFAVLFGTRQ 180 Query: 181 TDATEHQHGLILAIAAESIVKLVAFIAAGAFVTFWMFSPVELYERALKTPEAARAIEYVP 240 TDATEHQHGL+LA+A ESIVKLVAF+AAG FVTFWMFSP EL ERA+KTPEA RAI Y P Sbjct: 181 TDATEHQHGLMLAVATESIVKLVAFLAAGIFVTFWMFSPHELIERAMKTPEAVRAINYSP 240 Query: 241 SIGNFLIMTLLSFCAVMLLPRQFHVSVVENSTPAEVTRARWLFPLYLIAINLFVIPIAIA 300 SIGNFL MTLLS CAVMLLPRQFHVSVVENS+ AEV RARWLFPLYL+AINLFVIPIAIA Sbjct: 241 SIGNFLTMTLLSLCAVMLLPRQFHVSVVENSSDAEVGRARWLFPLYLVAINLFVIPIAIA 300 Query: 301 GLVIFPFGAVDADMFVLALPIEGNSQLLSLAVFVGGLSAATAMVIVECVALSIMVSNDIV 360 GLV FPFG D DM+VLALP+ G + LLS+A+FVGGLSAATAMVIVECVALSIMVSND+V Sbjct: 301 GLVSFPFGTADPDMYVLALPMAGGADLLSVAIFVGGLSAATAMVIVECVALSIMVSNDLV 360 Query: 361 LPLVLPRSDDARAGQKDFGDFLLKARRFSIFAIMVLAYFYYRALGNTQLVAIGLLSFAAI 420 +PLVL R + R G DF DFLL++RR +IFAIMV+AYFYYRALGNTQL AIGLLSFAAI Sbjct: 361 VPLVLQRRPEGRTGGADFSDFLLRSRRLAIFAIMVMAYFYYRALGNTQLAAIGLLSFAAI 420 Query: 421 TQLAPAFFGGLFWRRATARGAMAGMLVGFATWLYTLFIPSFLETSTAGLMLLQHGPFGVE 480 QLAP+FFGGL WRRATARGA+ GMLVGFA WLYTLFIPSF+++STAG++LLQHGPFG+E Sbjct: 421 AQLAPSFFGGLLWRRATARGAIGGMLVGFAVWLYTLFIPSFMDSSTAGILLLQHGPFGIE 480 Query: 481 ALRPX------------GVLWSLALNILTYVLFSLARAPSSIELLQADVFVPNALAPIAP 528 LRP GV+WSL+LNILTYVL SLAR PSSIEL+QAD+FVPN LAPI+P Sbjct: 481 VLRPQALFGADLPPLMHGVIWSLSLNILTYVLLSLARRPSSIELVQADLFVPNTLAPISP 540 Query: 529 SFRRWRTTVTVEDIQSTVTQYLGPDRTREAFASFAVDRNIVLLASAPADFELLQHAERLI 588 +FRRWRTTVTV+DIQ+TV QYLGPDR R +F +F+ RN+ L +APADFELLQHAE LI Sbjct: 541 NFRRWRTTVTVQDIQTTVAQYLGPDRARHSFEAFSARRNVRLEPAAPADFELLQHAEHLI 600 Query: 589 ASSIGAASSRLVMSLLLQRRTVSAKAALKLLDDSHAALHFNREILQTALNHVRQGIAVFD 648 ASSIGAASSRLVMSLLL++RTVSAKAALKLLDDSHAALHFNREILQTALNHVRQGIAVFD Sbjct: 601 ASSIGAASSRLVMSLLLRKRTVSAKAALKLLDDSHAALHFNREILQTALNHVRQGIAVFD 660 Query: 649 ADLQLICSNRQFSELLGLPQHLVQLGIPLSEILEFMGAISPPASGDGDGLLQARLRAYTT 708 ADLQLICSNRQF +LL +P H +Q G PL EILEFM +P + + +L+ RL AYT Sbjct: 661 ADLQLICSNRQFGDLLNVPPHFIQFGTPLREILEFMDVSNPADPIEREAMLERRLAAYTI 720 Query: 709 EGEPYLERFTDRHLVIEVRANRMPGGGLVITFSDVTPSFEAAEALERANATLEKRVRDRT 768 + EPYLER DRH+VIEV NRMPG G VITF+DVTP+FEAAEALERANATLEKRVRDRT Sbjct: 721 DSEPYLERLPDRHMVIEVLTNRMPGSGFVITFTDVTPTFEAAEALERANATLEKRVRDRT 780 Query: 769 EELTRLNSELALAKGIAEDANASKTRFLAAASHDILQPLNAARLYVTSLVERQNGGEDSR 828 EELTRLNSELALAK AEDA+ SKTRFLAAASHDILQPLNAARLYVTSLVERQ+ GE++R Sbjct: 781 EELTRLNSELALAKSTAEDASISKTRFLAAASHDILQPLNAARLYVTSLVERQHSGEETR 840 Query: 829 LVENIDDSLEAIEDILGALLDISRLDAGAMTPAITSFRMADLMRSLEIEFMPIARDKGLD 888 LVENID+SL+AIE+ILGALLDISRLDAGAM +I+SF+MADLMRSLEIEF PIAR KGLD Sbjct: 841 LVENIDESLQAIEEILGALLDISRLDAGAMATSISSFKMADLMRSLEIEFAPIARAKGLD 900 Query: 889 LRFVACSLPVESDRSLLRRLLQNFISNAIKYTPRGRVLIGCRRRGATLQISIFDTGVGIP 948 L FV CSLPVESDR LLRRLLQN ISNAIKYTPRGRVL+GCRRRGA+L+I ++DTGVGIP Sbjct: 901 LTFVPCSLPVESDRLLLRRLLQNLISNAIKYTPRGRVLVGCRRRGASLKICVYDTGVGIP 960 Query: 949 VQKRGEIFKEFHRLEQGARIARGLGLGLSIVERLARVLNHRIAISANVSGGSAFSVTVPV 1008 KRGEIFKEFHRLEQGARIARGLGLGLSIVERLARVLNH IAI AN SGGS FSVTVP Sbjct: 961 TVKRGEIFKEFHRLEQGARIARGLGLGLSIVERLARVLNHGIAIDANASGGSVFSVTVPT 1020 Query: 1009 ATAVNHTAAVTTATPLSKTPMSGSLIVCIENDPAILDGMKTLLTAWDAEVIAVLDADGAI 1068 A A+ TAAVT+ATPL++TP++G+LIVCIEND AILDGM+TLL AWDAEVIAV D +GAI Sbjct: 1021 AKAITLTAAVTSATPLARTPIAGALIVCIENDAAILDGMRTLLKAWDAEVIAVADPEGAI 1080 Query: 1069 SAIEAAGGRVTGVLVDYHLDRGNGVAAIREIRRRFGDGIPAILITADRSPAVRAAAREEN 1128 +AIE AG RVTG+LVDYHLDRGNG+AAIR+IRRRFGD IPAILITADRSPAV+ AAR+E Sbjct: 1081 AAIEGAGKRVTGLLVDYHLDRGNGIAAIRDIRRRFGDAIPAILITADRSPAVQLAARDEK 1140 Query: 1129 IAVLNKPVKPASLRALLGQWRTQQMVAAE 1157 IAVLNKPVKPASLRALLGQWRTQQMVAAE Sbjct: 1141 IAVLNKPVKPASLRALLGQWRTQQMVAAE 1169 >ref|YP_001237027.1| putative two-component hybrid sensor histidine kinase and response regulator [Bradyrhizobium sp. BTAi1] gb|ABQ33121.1| putative two-component hybrid sensor histidine kinase and response regulator [Bradyrhizobium sp. BTAi1] Length = 1169 Score = 1877 bits (4863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 933/1169 (79%), Positives = 1029/1169 (88%), Gaps = 12/1169 (1%) Query: 1 MLHDWGVIATAFAYIGLLFFIASRGDRTSPGERGRASQWIYPLSLAIYCTSWTFFGSVGF 60 MLHDWGVIA AF YIG LF +ASRG+R R + IYPLSLAIYCTSWTFFGSVGF Sbjct: 1 MLHDWGVIAAAFGYIGFLFLVASRGNRAGDRRPSRLAGLIYPLSLAIYCTSWTFFGSVGF 60 Query: 61 ATRTSIDFLAIYVGPIVMVGLCTPLLRRVIALAKSQNITSIADFIAARYGKSQAVAATVA 120 A+R S+DFLAIY+GPI+MVG CTPLLRRVI LAKSQNITS+AD I ARYGKSQAVAATVA Sbjct: 61 ASRNSVDFLAIYLGPILMVGACTPLLRRVIQLAKSQNITSVADLIGARYGKSQAVAATVA 120 Query: 121 LIAIIGSVPYIALQLKAVAASLETILSEDQAFSKIPVIGDIALMVTLAMAVFAVLFGTRH 180 LIAIIGSVPYIALQLKAVA+SLETI+ +D+AF+ IP++GD+ALMVTLAMA+FAVLFGTR Sbjct: 121 LIAIIGSVPYIALQLKAVASSLETIMVDDRAFAHIPIVGDMALMVTLAMAIFAVLFGTRQ 180 Query: 181 TDATEHQHGLILAIAAESIVKLVAFIAAGAFVTFWMFSPVELYERALKTPEAARAIEYVP 240 TDATEHQHGL+LA+A ESI+KL+AFIAAGAFVTFWMFSPVEL ERA+K+PEA RA+EYVP Sbjct: 181 TDATEHQHGLMLAVATESIIKLIAFIAAGAFVTFWMFSPVELIERAMKSPEAERALEYVP 240 Query: 241 SIGNFLIMTLLSFCAVMLLPRQFHVSVVENSTPAEVTRARWLFPLYLIAINLFVIPIAIA 300 IG+FL MTLLSFCA MLLPRQFHVSVVEN+ AEV+RARW+FPLYL+AINLFVIPIA+A Sbjct: 241 GIGSFLTMTLLSFCAAMLLPRQFHVSVVENADDAEVSRARWMFPLYLVAINLFVIPIALA 300 Query: 301 GLVIFPFGAVDADMFVLALPIEGNSQLLSLAVFVGGLSAATAMVIVECVALSIMVSNDIV 360 GL+ FPFGAVD+DM+VLALPIE NSQ LS+ VFVGGLSAATAMVIVECVALSIMV NDIV Sbjct: 301 GLITFPFGAVDSDMYVLALPIEANSQWLSVLVFVGGLSAATAMVIVECVALSIMVCNDIV 360 Query: 361 LPLVLPRSDDARAGQKDFGDFLLKARRFSIFAIMVLAYFYYRALGNTQLVAIGLLSFAAI 420 +PLVL R + R +DF FLL RR +IFAIMV+AYFYYRALG TQL AIGLLSFAAI Sbjct: 361 VPLVLQRQQEQREIGRDFAGFLLGTRRIAIFAIMVMAYFYYRALGTTQLAAIGLLSFAAI 420 Query: 421 TQLAPAFFGGLFWRRATARGAMAGMLVGFATWLYTLFIPSFLETSTAGLMLLQHGPFGVE 480 QLAP+FFGGL WRRATARGAM GMLVGFA WLYTLFIPSFL+TST+G++ LQHGPFG+E Sbjct: 421 AQLAPSFFGGLLWRRATARGAMGGMLVGFAVWLYTLFIPSFLDTSTSGILFLQHGPFGLE 480 Query: 481 ALRPX------------GVLWSLALNILTYVLFSLARAPSSIELLQADVFVPNALAPIAP 528 AL+P GVLWSL+LN+LTY++ SLAR PSSIELLQAD+FVP L P AP Sbjct: 481 ALKPQALLGTDLPPLLHGVLWSLSLNLLTYIVLSLARQPSSIELLQADLFVPAELTPSAP 540 Query: 529 SFRRWRTTVTVEDIQSTVTQYLGPDRTREAFASFAVDRNIVLLASAPADFELLQHAERLI 588 SFRRWR+TVTV+DIQ+TV QYLGPDR R +F +FA RN+ L +APADFELL+HAE LI Sbjct: 541 SFRRWRSTVTVQDIQTTVGQYLGPDRARASFEAFAAQRNLPLDPAAPADFELLRHAEHLI 600 Query: 589 ASSIGAASSRLVMSLLLQRRTVSAKAALKLLDDSHAALHFNREILQTALNHVRQGIAVFD 648 ASSIGAASSRLVMSLLL++RTVSAKAALKLLDDSHAALHFNREILQTALNHVRQGIAVFD Sbjct: 601 ASSIGAASSRLVMSLLLRKRTVSAKAALKLLDDSHAALHFNREILQTALNHVRQGIAVFD 660 Query: 649 ADLQLICSNRQFSELLGLPQHLVQLGIPLSEILEFMGAISPPASGDGDGLLQARLRAYTT 708 ADLQLICSN QF +LLGLP HLVQ+G PL EILEFMG I P D + LL RL AYTT Sbjct: 661 ADLQLICSNGQFVDLLGLPPHLVQIGSPLREILEFMGTIGAPTYEDSEALLARRLAAYTT 720 Query: 709 EGEPYLERFTDRHLVIEVRANRMPGGGLVITFSDVTPSFEAAEALERANATLEKRVRDRT 768 EGEPYLER DRH+VIEVR NRMP GGLVITF+DVTPSFEAAEALERANATLEKRVRDRT Sbjct: 721 EGEPYLERLADRHMVIEVRTNRMPDGGLVITFTDVTPSFEAAEALERANATLEKRVRDRT 780 Query: 769 EELTRLNSELALAKGIAEDANASKTRFLAAASHDILQPLNAARLYVTSLVERQNGGEDSR 828 EELTRLNSELALAK AEDAN SKTRFLAAASHDILQPLNAARLY+TSLVERQ GE+SR Sbjct: 781 EELTRLNSELALAKSAAEDANISKTRFLAAASHDILQPLNAARLYITSLVERQTAGEESR 840 Query: 829 LVENIDDSLEAIEDILGALLDISRLDAGAMTPAITSFRMADLMRSLEIEFMPIARDKGLD 888 LVENIDDSLEAIE+ILGALLDISRLDAGAMTP ++SF+MADLMRSLEIEF P AR KGL Sbjct: 841 LVENIDDSLEAIEEILGALLDISRLDAGAMTPQVSSFKMADLMRSLEIEFAPAARAKGLA 900 Query: 889 LRFVACSLPVESDRSLLRRLLQNFISNAIKYTPRGRVLIGCRRRGATLQISIFDTGVGIP 948 L FV CSLPVESDR LLRRLLQN ISNAIKYTP+GRVL+GCRRRGA+LQI ++DTGVGIP Sbjct: 901 LTFVPCSLPVESDRLLLRRLLQNLISNAIKYTPKGRVLVGCRRRGASLQIGVWDTGVGIP 960 Query: 949 VQKRGEIFKEFHRLEQGARIARGLGLGLSIVERLARVLNHRIAISANVSGGSAFSVTVPV 1008 KRGEIFKEFHRLEQGARIARGLGLGLSIVER+ARVLNH IA+ + GSAFSVTVP+ Sbjct: 961 PVKRGEIFKEFHRLEQGARIARGLGLGLSIVERIARVLNHGIALDSQPGRGSAFSVTVPI 1020 Query: 1009 ATAVNHTAAVTTATPLSKTPMSGSLIVCIENDPAILDGMKTLLTAWDAEVIAVLDADGAI 1068 A AVNHTAAVT+ATPL+ TP+SG+LIVCIENDPAILDGM+TLLTAWDAEVIAV D + A+ Sbjct: 1021 AKAVNHTAAVTSATPLATTPISGALIVCIENDPAILDGMRTLLTAWDAEVIAVPDPESAV 1080 Query: 1069 SAIEAAGGRVTGVLVDYHLDRGNGVAAIREIRRRFGDGIPAILITADRSPAVRAAAREEN 1128 AI A G +TG+LVDYHLDRGNG+AAIR+IRRRF + +PAILITADRSP VRAAAR+EN Sbjct: 1081 EAIAARNGAITGLLVDYHLDRGNGIAAIRDIRRRFDEALPAILITADRSPHVRAAARDEN 1140 Query: 1129 IAVLNKPVKPASLRALLGQWRTQQMVAAE 1157 IAVLNKP+KPASLRALLGQWR QQMVAAE Sbjct: 1141 IAVLNKPLKPASLRALLGQWRIQQMVAAE 1169 >ref|YP_001208492.1| putative two-component hybrid sensor histidine kinase and response regulator [Bradyrhizobium sp. ORS 278] emb|CAL80277.1| putative two-component hybrid sensor histidine kinase and response regulator [Bradyrhizobium sp. ORS 278] Length = 1173 Score = 1867 bits (4835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 935/1173 (79%), Positives = 1024/1173 (87%), Gaps = 16/1173 (1%) Query: 1 MLHDWGVIATAFAYIGLLFFIASRGDRT----SPGERGRASQWIYPLSLAIYCTSWTFFG 56 MLHDWGVI AF YIG LF +ASRG+R +P R + IYPLSLAIYCTSWTFFG Sbjct: 1 MLHDWGVILAAFGYIGFLFLVASRGNRAGERRAPESRSWLAGLIYPLSLAIYCTSWTFFG 60 Query: 57 SVGFATRTSIDFLAIYVGPIVMVGLCTPLLRRVIALAKSQNITSIADFIAARYGKSQAVA 116 SVGFA+RTS+DFLAIY+GPI+MVG CTPLLRRVI LAK+QNITS+AD I ARYGKSQAVA Sbjct: 61 SVGFASRTSVDFLAIYLGPILMVGACTPLLRRVIHLAKTQNITSVADLIGARYGKSQAVA 120 Query: 117 ATVALIAIIGSVPYIALQLKAVAASLETILSEDQAFSKIPVIGDIALMVTLAMAVFAVLF 176 ATVALIAIIGSVPYIALQLKAVA+SL+TIL +D+AF+ IP++GD+ALMVTLAMA+FAVLF Sbjct: 121 ATVALIAIIGSVPYIALQLKAVASSLQTILIDDRAFAHIPIVGDMALMVTLAMAMFAVLF 180 Query: 177 GTRHTDATEHQHGLILAIAAESIVKLVAFIAAGAFVTFWMFSPVELYERALKTPEAARAI 236 GTR TDATEHQHGL+LA+A ESI+KLVAFIAAGAFVTFWMFSPVEL ERA+K+PEA RA+ Sbjct: 181 GTRQTDATEHQHGLMLAVATESIIKLVAFIAAGAFVTFWMFSPVELIERAMKSPEAERAL 240 Query: 237 EYVPSIGNFLIMTLLSFCAVMLLPRQFHVSVVENSTPAEVTRARWLFPLYLIAINLFVIP 296 EYVP IGNFL MTLLSFCA MLLPRQFHVSVVEN+ AEV+RARWLFPLYL+AINLFVIP Sbjct: 241 EYVPGIGNFLTMTLLSFCAAMLLPRQFHVSVVENADDAEVSRARWLFPLYLVAINLFVIP 300 Query: 297 IAIAGLVIFPFGAVDADMFVLALPIEGNSQLLSLAVFVGGLSAATAMVIVECVALSIMVS 356 IA+AGLV FPFGAVD+DM+VLALPIE NSQ LS+ VFVGGLSAATAMVIVECVALSIMV Sbjct: 301 IALAGLVTFPFGAVDSDMYVLALPIEANSQWLSVLVFVGGLSAATAMVIVECVALSIMVC 360 Query: 357 NDIVLPLVLPRSDDARAGQKDFGDFLLKARRFSIFAIMVLAYFYYRALGNTQLVAIGLLS 416 NDIV+PLVL R R +DF FLL RR +IFAIMV+AYFYYRALG QL AIGLLS Sbjct: 361 NDIVVPLVLQRQQAHRETGRDFAGFLLGTRRIAIFAIMVMAYFYYRALGTAQLAAIGLLS 420 Query: 417 FAAITQLAPAFFGGLFWRRATARGAMAGMLVGFATWLYTLFIPSFLETSTAGLMLLQHGP 476 FAAI QLAP+FFGGL WRRATARGAM GMLVGF WLYTLFIPSFL+TSTAG++ LQHGP Sbjct: 421 FAAIAQLAPSFFGGLLWRRATARGAMGGMLVGFGVWLYTLFIPSFLDTSTAGILFLQHGP 480 Query: 477 FGVEALRPX------------GVLWSLALNILTYVLFSLARAPSSIELLQADVFVPNALA 524 FG E LRP GVLWSL+LN+LTY++ SLAR PSSIELLQAD+FVP L Sbjct: 481 FGFEPLRPQALLGTDLPPLLHGVLWSLSLNLLTYIVLSLARQPSSIELLQADLFVPAELT 540 Query: 525 PIAPSFRRWRTTVTVEDIQSTVTQYLGPDRTREAFASFAVDRNIVLLASAPADFELLQHA 584 P APSFRRWR+TVTV+DIQSTV QYLGPDR R +F +FA RN+ L +APADFELL+HA Sbjct: 541 PSAPSFRRWRSTVTVQDIQSTVGQYLGPDRARASFETFAAQRNMSLDPAAPADFELLRHA 600 Query: 585 ERLIASSIGAASSRLVMSLLLQRRTVSAKAALKLLDDSHAALHFNREILQTALNHVRQGI 644 E LIASSIGAASSRLVMSLLL++RTVSAKAALKLLDDSHAALHFNREILQTALNHVRQGI Sbjct: 601 EHLIASSIGAASSRLVMSLLLRKRTVSAKAALKLLDDSHAALHFNREILQTALNHVRQGI 660 Query: 645 AVFDADLQLICSNRQFSELLGLPQHLVQLGIPLSEILEFMGAISPPASGDGDGLLQARLR 704 AVFDADLQLICSN QF +LLGLP HLVQ+G PL EILEFMG I P D + LL RL Sbjct: 661 AVFDADLQLICSNGQFVDLLGLPPHLVQIGSPLREILEFMGTIGAPTYEDSEALLARRLA 720 Query: 705 AYTTEGEPYLERFTDRHLVIEVRANRMPGGGLVITFSDVTPSFEAAEALERANATLEKRV 764 AYTTEGEPYLER DRH+VIEVR+NRMP GGLVITF+DVTPSFEAAEALERANATLEKRV Sbjct: 721 AYTTEGEPYLERLADRHMVIEVRSNRMPDGGLVITFTDVTPSFEAAEALERANATLEKRV 780 Query: 765 RDRTEELTRLNSELALAKGIAEDANASKTRFLAAASHDILQPLNAARLYVTSLVERQNGG 824 RDRTEELTRLNSELALAK AEDAN SKTRFLAAASHDILQPLNAARLYVTSLVERQ G Sbjct: 781 RDRTEELTRLNSELALAKSAAEDANISKTRFLAAASHDILQPLNAARLYVTSLVERQTAG 840 Query: 825 EDSRLVENIDDSLEAIEDILGALLDISRLDAGAMTPAITSFRMADLMRSLEIEFMPIARD 884 E+SRLVENIDDSLEAIE+ILGALLDISRLDAGAMTP ++SF+MADLMRSLEIEF P AR Sbjct: 841 EESRLVENIDDSLEAIEEILGALLDISRLDAGAMTPQVSSFKMADLMRSLEIEFAPAARA 900 Query: 885 KGLDLRFVACSLPVESDRSLLRRLLQNFISNAIKYTPRGRVLIGCRRRGATLQISIFDTG 944 KGL+L FV CSLPVESDR LLRRLLQNFISNAIKYTP+GRVL+GCRR G +LQI ++DTG Sbjct: 901 KGLELVFVPCSLPVESDRLLLRRLLQNFISNAIKYTPQGRVLVGCRRHGQSLQIGVYDTG 960 Query: 945 VGIPVQKRGEIFKEFHRLEQGARIARGLGLGLSIVERLARVLNHRIAISANVSGGSAFSV 1004 VGIP KRGEIFKEFHRLEQGARIARGLGLGLSIVER+ARVLNH IA+ + GS FSV Sbjct: 961 VGIPPVKRGEIFKEFHRLEQGARIARGLGLGLSIVERIARVLNHGIALDSRPGRGSVFSV 1020 Query: 1005 TVPVATAVNHTAAVTTATPLSKTPMSGSLIVCIENDPAILDGMKTLLTAWDAEVIAVLDA 1064 TVPVA A+NHTAAVT+ATPL+ TP+SG+LIVCIENDPAILDGM+TLLTAW AEVIAV D Sbjct: 1021 TVPVAKAINHTAAVTSATPLATTPISGALIVCIENDPAILDGMRTLLTAWGAEVIAVSDP 1080 Query: 1065 DGAISAIEAAGGRVTGVLVDYHLDRGNGVAAIREIRRRFGDGIPAILITADRSPAVRAAA 1124 + A AI A G VTG+LVDYHLDRGNG+AAIR+IRRRF + +PAILITADRSP VRAAA Sbjct: 1081 ESAEEAIAARNGAVTGLLVDYHLDRGNGIAAIRDIRRRFNEALPAILITADRSPHVRAAA 1140 Query: 1125 REENIAVLNKPVKPASLRALLGQWRTQQMVAAE 1157 R++NIAVLNKP+KPASLRALLGQWR QQMVAAE Sbjct: 1141 RDDNIAVLNKPLKPASLRALLGQWRIQQMVAAE 1173 >ref|YP_534664.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gb|ABD90345.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 1169 Score = 1781 bits (4612), Expect = 0.0, Method: Compositional matrix adjust. Identities = 904/1168 (77%), Positives = 1012/1168 (86%), Gaps = 13/1168 (1%) Query: 1 MLHDWGVIATAFAYIGLLFFIASRGDRTSPGERGRASQWIYPLSLAIYCTSWTFFGSVGF 60 MLHDWGVIA AF YIG LF +AS GDR S +R R IYPLSLAIYCTSWTFFGSVG Sbjct: 1 MLHDWGVIAAAFGYIGFLFLVASYGDRLSQAQRQRFGTLIYPLSLAIYCTSWTFFGSVGV 60 Query: 61 ATRTSIDFLAIYVGPIVMVGLCTPLLRRVIALAKSQNITSIADFIAARYGKSQAVAATVA 120 A+R S+DFLAIY+GPI+MV PLLRRVI LAKSQNITSIADFIAARYGKSQAVAATVA Sbjct: 61 ASRFSVDFLAIYIGPILMVAFGAPLLRRVIDLAKSQNITSIADFIAARYGKSQAVAATVA 120 Query: 121 LIAIIGSVPYIALQLKAVAASLETILSEDQAFSKIPVIGDIALMVTLAMAVFAVLFGTRH 180 +IAI+GSVPYIALQLKAVA+SL+TIL +DQ S +PV GDIAL+V L MA+FAVLFGTR Sbjct: 121 IIAIVGSVPYIALQLKAVASSLQTILGDDQVMSSMPVAGDIALIVALTMALFAVLFGTRQ 180 Query: 181 TDATEHQHGLILAIAAESIVKLVAFIAAGAFVTFWMFSPVELYERALKTPEAARAIEYVP 240 T+ATEHQHGL+LA+A ESIVKLVAFIAAGAFVTFWMFSP EL ERA+KTPEA RAI+YVP Sbjct: 181 TNATEHQHGLMLAVATESIVKLVAFIAAGAFVTFWMFSPHELIERAMKTPEAVRAIDYVP 240 Query: 241 SIGNFLIMTLLSFCAVMLLPRQFHVSVVENSTPAEVTRARWLFPLYLIAINLFVIPIAIA 300 S GNFL M LLSFCA+MLLPRQFHVSVVENS+ AEV+RARWLFPLYLIAINLFVIPIA+A Sbjct: 241 SSGNFLTMVLLSFCAIMLLPRQFHVSVVENSSSAEVSRARWLFPLYLIAINLFVIPIALA 300 Query: 301 GLVIFPFGAVDADMFVLALPIEGNSQLLSLAVFVGGLSAATAMVIVECVALSIMVSNDIV 360 GL+ FPFGAVD+DM+VLALP+E N+ LS+AVF+GGLSAATAMVIVECVAL++MVSND+V Sbjct: 301 GLISFPFGAVDSDMYVLALPLEANAPYLSVAVFIGGLSAATAMVIVECVALAVMVSNDLV 360 Query: 361 LPLVLPRSDDARAGQKDFGDFLLKARRFSIFAIMVLAYFYYRALGNTQLVAIGLLSFAAI 420 +PLVL R R ++ +G FLL RR +IFAI+++AY Y+RALGNTQL AIGLLSFAAI Sbjct: 361 MPLVLKRGVTPRDDERSYGSFLLTVRRVAIFAILIMAYLYFRALGNTQLAAIGLLSFAAI 420 Query: 421 TQLAPAFFGGLFWRRATARGAMAGMLVGFATWLYTLFIPSFLETSTAGLMLLQHGPFGVE 480 Q APAFFGGL WRRATARGA+ GML+GFA W YTLF+PSFL+ +TAG++LLQHGPFG+E Sbjct: 421 AQFAPAFFGGLIWRRATARGAIGGMLIGFAVWAYTLFMPSFLDGNTAGVLLLQHGPFGIE 480 Query: 481 ALRP------------XGVLWSLALNILTYVLFSLARAPSSIELLQADVFVPNALAPIAP 528 ALRP GVLWSL+LNIL YV+ SL + PSSIE LQA VFVP AL P+AP Sbjct: 481 ALRPRALFGADLPPLLHGVLWSLSLNILAYVVLSLWKQPSSIERLQAAVFVPAALKPMAP 540 Query: 529 SFRRWRTTVTVEDIQSTVTQYLGPDRTREAFASFAVDRNIVLLASAPADFELLQHAERLI 588 +FRRWRTTVTV+DI V QYLGP+R REAF +FA R I + +APADFELLQHAE LI Sbjct: 541 AFRRWRTTVTVQDILGAVAQYLGPERAREAFRTFAASRRINIDPAAPADFELLQHAEHLI 600 Query: 589 ASSIGAASSRLVMSLLLQRRTVSAKAALKLLDDSHAALHFNREILQTALNHVRQGIAVFD 648 ASSIGAASSRLV+SLLL++RTVSA+AALKLLDDSHAALHFNREILQTALNHVRQGIAVF+ Sbjct: 601 ASSIGAASSRLVLSLLLRKRTVSAEAALKLLDDSHAALHFNREILQTALNHVRQGIAVFN 660 Query: 649 ADLQLICSNRQFSELLGLPQHLVQLGIPLSEILEFMGAISPPASGDGDGLLQARLRAYTT 708 DLQLICSNRQF ++LGLP H+VQ+GIPL+EILEF+ ++S P GD D Q RL AYTT Sbjct: 661 PDLQLICSNRQFGDILGLPPHIVQIGIPLTEILEFL-SLSAPGFGDSDMQTQIRLAAYTT 719 Query: 709 EGEPYLERFTDRHLVIEVRANRMPGGGLVITFSDVTPSFEAAEALERANATLEKRVRDRT 768 EG PY+ER DRHLVIEVRANRMP GGLVITFSDVTPSFEAAEALERANATLEKRVRDRT Sbjct: 720 EGAPYIERMQDRHLVIEVRANRMPDGGLVITFSDVTPSFEAAEALERANATLEKRVRDRT 779 Query: 769 EELTRLNSELALAKGIAEDANASKTRFLAAASHDILQPLNAARLYVTSLVERQNGGEDSR 828 EELTRLNS LALAK AE+AN SKTRFLAAASHDILQPLNAARLYVTSLVERQ+GG+D++ Sbjct: 780 EELTRLNSALALAKSTAEEANISKTRFLAAASHDILQPLNAARLYVTSLVERQSGGDDAK 839 Query: 829 LVENIDDSLEAIEDILGALLDISRLDAGAMTPAITSFRMADLMRSLEIEFMPIARDKGLD 888 LVENID+SLEAIE+I+GALLDISRLDAGAMTP+++SF + DLMRSLEIEF PIAR KGL Sbjct: 840 LVENIDESLEAIEEIIGALLDISRLDAGAMTPSLSSFVIGDLMRSLEIEFAPIARAKGLK 899 Query: 889 LRFVACSLPVESDRSLLRRLLQNFISNAIKYTPRGRVLIGCRRRGATLQISIFDTGVGIP 948 L FV C LPVESDR LLRRL+QN ISNAIKYTP+G+VL+GCRRRG +LQI I+DTGVGIP Sbjct: 900 LTFVPCLLPVESDRLLLRRLMQNLISNAIKYTPQGKVLVGCRRRGQSLQIGIYDTGVGIP 959 Query: 949 VQKRGEIFKEFHRLEQGARIARGLGLGLSIVERLARVLNHRIAISANVSGGSAFSVTVPV 1008 + KRGEIFKEFHRLEQGARIARGLGLGLSIVERLARVLNH IAI +N SGGS FSVTV + Sbjct: 960 ILKRGEIFKEFHRLEQGARIARGLGLGLSIVERLARVLNHGIAIDSNKSGGSFFSVTVQI 1019 Query: 1009 ATAVNHTAAVTTATPLSKTPMSGSLIVCIENDPAILDGMKTLLTAWDAEVIAVLDADGAI 1068 A VNHTAAVT+ATPLS+ M+G L+ CIENDPAILDGMKTLLT W A VIAV D + AI Sbjct: 1020 ANMVNHTAAVTSATPLSRASMAGILVACIENDPAILDGMKTLLTTWGASVIAVADPEAAI 1079 Query: 1069 SAIEAAGGRVTGVLVDYHLDRGNGVAAIREIRRRFGDGIPAILITADRSPAVRAAAREEN 1128 AIE+AG VTG+LVDYHLDRGNG+A IR+IR RFG+ IPAILITADRSP VRAAAR++N Sbjct: 1080 KAIESAGRPVTGLLVDYHLDRGNGIAGIRDIRHRFGEEIPAILITADRSPRVRAAARDDN 1139 Query: 1129 IAVLNKPVKPASLRALLGQWRTQQMVAA 1156 I+VLNKPVK ASLRALLGQWR QQ VAA Sbjct: 1140 ISVLNKPVKAASLRALLGQWRAQQNVAA 1167 >ref|YP_575634.1| periplasmic sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] gb|ABE61174.1| periplasmic sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] Length = 1169 Score = 1752 bits (4538), Expect = 0.0, Method: Compositional matrix adjust. Identities = 890/1172 (75%), Positives = 1009/1172 (86%), Gaps = 18/1172 (1%) Query: 1 MLHDWGVIATAFAYIGLLFFIASRGDRTSPGERGRASQWIYPLSLAIYCTSWTFFGSVGF 60 MLHDWGVIA A YIG LF +AS GDR RG A IYPLSLA+YCTSWTFFGSVG Sbjct: 1 MLHDWGVIAAAIGYIGFLFLVASYGDRAPKFGRGPAGPLIYPLSLAVYCTSWTFFGSVGL 60 Query: 61 ATRTSIDFLAIYVGPIVMVGLCTPLLRRVIALAKSQNITSIADFIAARYGKSQAVAATVA 120 ATRT +FLAIYVGP++++ CTPLLRR+I LAKSQNITS+ADFIAARYGKSQAVAATVA Sbjct: 61 ATRTGPEFLAIYVGPVLLIAFCTPLLRRIIQLAKSQNITSVADFIAARYGKSQAVAATVA 120 Query: 121 LIAIIGSVPYIALQLKAVAASLETILSEDQAFSKIPVIGDIALMVTLAMAVFAVLFGTRH 180 +IA+IGS+PYI+LQLKAVA+SL TIL +DQA +KIPVI DIAL+VT+A+A+FAVLFGTR Sbjct: 121 VIAMIGSIPYISLQLKAVASSLGTILIDDQAIAKIPVINDIALIVTIALALFAVLFGTRQ 180 Query: 181 TDATEHQHGLILAIAAESIVKLVAFIAAGAFVTFWMFSPVELYERALKTPEAARAIEYVP 240 TDATEHQHGL+LAIA ESIVKLVAFIAAG FVTFWMFSPVEL ERALK+PEA RAIEY P Sbjct: 181 TDATEHQHGLMLAIATESIVKLVAFIAAGVFVTFWMFSPVELVERALKSPEAMRAIEYTP 240 Query: 241 SIGNFLIMTLLSFCAVMLLPRQFHVSVVENSTPAEVTRARWLFPLYLIAINLFVIPIAIA 300 SIGNFL MTLLSF A+MLLPRQFHVSVVENS+ AEV RARWLFPLYL+AIN+FV+PIA+A Sbjct: 241 SIGNFLTMTLLSFLAIMLLPRQFHVSVVENSSDAEVGRARWLFPLYLVAINIFVVPIALA 300 Query: 301 GLVIFPFGAVDADMFVLALPIEGNSQLLSLAVFVGGLSAATAMVIVECVALSIMVSNDIV 360 GLV FPFG ++DM+VLALPIEG S+LLS+AVF+GGLSA TAMVIVECVAL+IMVSNDIV Sbjct: 301 GLVTFPFG--NSDMYVLALPIEGQSRLLSIAVFIGGLSAGTAMVIVECVALAIMVSNDIV 358 Query: 361 LPLVLPRSDDARAGQKDFGDFLLKARRFSIFAIMVLAYFYYRALGNTQLVAIGLLSFAAI 420 +PLVL RS AR G+KDFG+FLLK RR +IFAIM++AY YYRALG+ QL AIGLLSFAAI Sbjct: 359 VPLVLQRSPAARGGRKDFGNFLLKTRRLAIFAIMIMAYLYYRALGSAQLAAIGLLSFAAI 418 Query: 421 TQLAPAFFGGLFWRRATARGAMAGMLVGFATWLYTLFIPSFLETSTAGLMLLQHGPFGVE 480 QLAP F GGL WRRATARGAM GML GFA W YTLF+PS L+ +T G MLLQHGPFG+ Sbjct: 419 AQLAPVFLGGLVWRRATARGAMGGMLAGFAVWAYTLFLPSLLDGTTVGTMLLQHGPFGIG 478 Query: 481 ALRPX------------GVLWSLALNILTYVLFSLARAPSSIELLQADVFVPNALAPIAP 528 L+P GVLWSL+LN+LTYV SL R PSSIE +QA +F P+ALAP+ P Sbjct: 479 ELKPQALFGVNLPPLMHGVLWSLSLNVLTYVALSLTRQPSSIERVQAGIFAPHALAPLTP 538 Query: 529 SFRRWRTTVTVEDIQSTVTQYLGPDRTREAFASFAVDRNIVLLASAPADFELLQHAERLI 588 FRRWR+ VTV+DI TV QYLGP+R R++F +FA R + L +APADFELLQHAE LI Sbjct: 539 PFRRWRSMVTVQDILGTVAQYLGPERARQSFKAFAAARRLNLDPAAPADFELLQHAEHLI 598 Query: 589 ASSIGAASSRLVMSLLLQRRTVSAKAALKLLDDSHAALHFNREILQTALNHVRQGIAVFD 648 ASSIGAASSRLV+SLLL+RRTVSAKAALKLLDD+HAALHFNRE+LQTALNHVRQGIAVF+ Sbjct: 599 ASSIGAASSRLVISLLLRRRTVSAKAALKLLDDAHAALHFNREMLQTALNHVRQGIAVFN 658 Query: 649 ADLQLICSNRQFSELLGLPQHLVQLGIPLSEILEFMGAISPPASGDGDGLLQARLRAYTT 708 DLQLICSNRQF +LGLP +VQ+GIPL+EILEF+G I + D + Q RL AYTT Sbjct: 659 TDLQLICSNRQFGNILGLPPQIVQIGIPLTEILEFLGTIDK-SQIDREAAKQTRLTAYTT 717 Query: 709 EGEPYLERFTDRHLVIEVRANRMPGGGLVITFSDVTPSFEAAEALERANATLEKRVRDRT 768 EG+PYLER DR++VIEVRANRMP GGLVITFSDVTPSFEAAEALERANATLEKRVRDRT Sbjct: 718 EGQPYLERRPDRNIVIEVRANRMPDGGLVITFSDVTPSFEAAEALERANATLEKRVRDRT 777 Query: 769 EELTRLNSELALAKGIAEDANASKTRFLAAASHDILQPLNAARLYVTSLVERQNGGEDSR 828 EELTRLNSELA AK IAE+AN SKTRFLAAA HDILQPLNAARLYVTSLVER++GGEDSR Sbjct: 778 EELTRLNSELARAKSIAEEANISKTRFLAAAGHDILQPLNAARLYVTSLVERRSGGEDSR 837 Query: 829 LVENIDDSLEAIEDILGALLDISRLDAGAMTPAITSFRMADLMRSLEIEFMPIARDKGLD 888 LV+NIDDSLEAIE+ILGALLDISRLDAGA+T +ITSFR+ DLMRSLEIEF P+AR + + Sbjct: 838 LVQNIDDSLEAIEEILGALLDISRLDAGAITTSITSFRVGDLMRSLEIEFAPMARARQVR 897 Query: 889 LRFVACSLPVESDRSLLRRLLQNFISNAIKYTPRGRVLIGCRRRGATLQISIFDTGVGIP 948 L FV SLP+ SDR LLRRLLQN ISNAIKYTP GRVLIGCRRRG +L+I+++DTGVGIP Sbjct: 898 LTFVPSSLPIASDRMLLRRLLQNLISNAIKYTPHGRVLIGCRRRGESLRINVYDTGVGIP 957 Query: 949 VQKRGEIFKEFHRLEQGARIARGLGLGLSIVERLARVLNHRIAISANVSGGSAFSVTVPV 1008 + KRGEIFKEFHRLEQGARIARGLGLGLSIV+RLARVL+ IA+ +N GGS FSVT+P+ Sbjct: 958 ILKRGEIFKEFHRLEQGARIARGLGLGLSIVQRLARVLDLTIALDSNRGGGSLFSVTIPI 1017 Query: 1009 ATAVNHTA---AVTTATPLSKTPMSGSLIVCIENDPAILDGMKTLLTAWDAEVIAVLDAD 1065 A A+N TA AVT++TPLS PMSG+LIVCIEND AILDGMKTLLT+WDA VIAV D + Sbjct: 1018 APAINQTAHATAVTSSTPLSHAPMSGTLIVCIENDLAILDGMKTLLTSWDARVIAVTDHE 1077 Query: 1066 GAISAIEAAGGRVTGVLVDYHLDRGNGVAAIREIRRRFGDGIPAILITADRSPAVRAAAR 1125 AI+AIEAAGG +TG+LVDYHLDRGNG+A IREIRR+FG+ IPAILITADRSP VR AA+ Sbjct: 1078 SAIAAIEAAGGPITGLLVDYHLDRGNGIATIREIRRKFGETIPAILITADRSPHVREAAQ 1137 Query: 1126 EENIAVLNKPVKPASLRALLGQWRTQQMVAAE 1157 E ++VLNKP+KPASLRAL+GQWR+QQ+ AAE Sbjct: 1138 LERVSVLNKPLKPASLRALIGQWRSQQIAAAE 1169