BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0106.0006.p         (42 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001241160.1| putative outer membrane autotransporter barr...    74   6e-12
ref|YP_001243020.1| putative outer membrane autotransporter barr...    71   4e-11
ref|YP_571418.1| outer membrane autotransporter barrel domain-co...    69   2e-10
ref|YP_569643.1| outer membrane autotransporter barrel domain-co...    68   4e-10
ref|YP_004108151.1| outer membrane autotransporter barrel domain...    67   7e-10

>ref|YP_001241160.1| putative outer membrane autotransporter barrel [Bradyrhizobium sp.
            BTAi1]
 gb|ABQ37254.1| Putative outer membrane autotransporter barrel [Bradyrhizobium sp.
            BTAi1]
          Length = 1078

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 39/41 (95%)

Query: 2    LTTASAELRWRNGWSAAATFEGEFSNVTQSYAGKGVMRYTW 42
            LTT +AE++WRNGWSAAA+FEGEFS+VT+SYAGKGV+RY W
Sbjct: 1038 LTTVAAEMKWRNGWSAAASFEGEFSDVTRSYAGKGVVRYAW 1078


>ref|YP_001243020.1| putative outer membrane autotransporter barrel [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ39114.1| putative outer membrane autotransporter barrel precursor
           [Bradyrhizobium sp. BTAi1]
          Length = 882

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 37/41 (90%)

Query: 2   LTTASAELRWRNGWSAAATFEGEFSNVTQSYAGKGVMRYTW 42
           LTTASAE+ W NGWSA A+FEGEFSNVT+SYAGKG++RY W
Sbjct: 842 LTTASAEVNWVNGWSAGASFEGEFSNVTRSYAGKGLVRYAW 882


>ref|YP_571418.1| outer membrane autotransporter barrel domain-containing protein
           [Rhodopseudomonas palustris BisB5]
 gb|ABE41517.1| Outer membrane autotransporter barrel [Rhodopseudomonas palustris
           BisB5]
          Length = 987

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 33/39 (84%)

Query: 4   TASAELRWRNGWSAAATFEGEFSNVTQSYAGKGVMRYTW 42
           TASAE +W NGWS A  FEGEFSNVTQSYAGKGV+RY W
Sbjct: 949 TASAETKWLNGWSVAGAFEGEFSNVTQSYAGKGVVRYAW 987


>ref|YP_569643.1| outer membrane autotransporter barrel domain-containing protein
            [Rhodopseudomonas palustris BisB5]
 gb|ABE39742.1| Outer membrane autotransporter barrel [Rhodopseudomonas palustris
            BisB5]
          Length = 1019

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 37/41 (90%)

Query: 2    LTTASAELRWRNGWSAAATFEGEFSNVTQSYAGKGVMRYTW 42
            LTTASAE++WR+G+S AA FEGEFS+VT+SYAGKGV RY W
Sbjct: 979  LTTASAEVKWRSGFSLAAIFEGEFSDVTRSYAGKGVARYQW 1019


>ref|YP_004108151.1| outer membrane autotransporter barrel domain-containing protein
            [Rhodopseudomonas palustris DX-1]
 gb|ADU43418.1| outer membrane autotransporter barrel domain protein
            [Rhodopseudomonas palustris DX-1]
          Length = 1155

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 36/41 (87%)

Query: 2    LTTASAELRWRNGWSAAATFEGEFSNVTQSYAGKGVMRYTW 42
            LTT SAE+ W NG+S AA FEGEFS+VT+SYAGKGV+RY+W
Sbjct: 1115 LTTVSAEVSWLNGFSVAAAFEGEFSDVTRSYAGKGVLRYSW 1155