BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0003.p (522 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767843.1| methyl-accepting chemotaxis protein [Bradyrhizo... 575 e-162 ref|YP_001208489.1| putative methyl-accepting chemotaxis recepto... 521 e-145 ref|YP_001237032.1| methyl-accepting chemotaxis sensory transduc... 504 e-140 ref|YP_567979.1| chemotaxis sensory transducer [Rhodopseudomonas... 498 e-138 ref|YP_001989957.1| methyl-accepting chemotaxis sensory transduc... 490 e-136 >ref|NP_767843.1| methyl-accepting chemotaxis protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46468.1| bll1203 [Bradyrhizobium japonicum USDA 110] Length = 717 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 306/441 (69%), Positives = 356/441 (80%), Gaps = 26/441 (5%) Query: 1 MLDAQTRLNAILAAAEVSADDATEAARTVGQISNVLAAGNLMAADMTAALSANSSETLDA 60 MLDAQTR+NAIL +A +SA+DATEAA+TVGQ+ NV+A+GNL AADM+AALSAN+S+ LD Sbjct: 182 MLDAQTRVNAILGSANLSAEDATEAAQTVGQLGNVVASGNLAAADMSAALSANTSDKLDD 241 Query: 61 IEAEFKAGRERVKSNLEDLPNNPAIVAVRDTASRLLVLGEGKTGVFKIRQKELDAIDYGQ 120 I+ EFK + R++SNL+ L +N +R TA +LL LG GKTGVF +R+KELD+IDYGQ Sbjct: 242 IQKEFKTAQGRLRSNLDLLSDNQGNKMLRATAEKLLALGTGKTGVFNLREKELDSIDYGQ 301 Query: 121 TILEETRKLNVGLGISVQQLVDAVQKETDSSTFQARQQISLATMVMIGLGALTLVGSFLF 180 TIL+ETRKLNVGLGISVQQLVD VQKET++STFQARQ+ISLAT VM+ LGAL LVGS LF Sbjct: 302 TILDETRKLNVGLGISVQQLVDGVQKETNASTFQARQEISLATSVMLALGALMLVGSALF 361 Query: 181 VWLYVGRNILRRIRGLQRSMQLLSDGDLDTEIPQSRQRDEIAVMADALQVFRESMVESRE 240 VWLYVGRNILRRI GLQR+MQ LS GDLDTEI +++ DEI M D L VFR+SMVE+R Sbjct: 362 VWLYVGRNILRRITGLQRAMQSLSAGDLDTEIARTKHNDEIGTMTDTLTVFRDSMVEARA 421 Query: 241 LTENQNKDRSAKAERASRMEAQIVTFESNVRSALGSLQTAANSMQSTAQSMSATADQSSA 300 L Q+KDR AKAERA+R+EA+I FES VRSAL +L +ANSMQSTAQSMS TADQS+A Sbjct: 422 LASEQDKDRVAKAERAARIEAKIAEFESTVRSALDNLAQSANSMQSTAQSMSTTADQSNA 481 Query: 301 LVNAVASAAEETSVNVQTVSAGTEELSSSIQEIGRQVVTSAEIARKAVEEASATDSTMQG 360 LVNAVASAAEETSVNVQTVS+GTE+LSSSI EI RQVVTSA IA+KAV+EA ATD+T+Q Sbjct: 482 LVNAVASAAEETSVNVQTVSSGTEQLSSSIAEISRQVVTSAGIAKKAVDEAGATDATVQS 541 Query: 361 LADNAARISVVVDLIQTIASQTNLLALNAX--------------------------TAKA 394 LAD+A+RISVVVDLIQTIASQTNLLALNA TAKA Sbjct: 542 LADSASRISVVVDLIQTIASQTNLLALNATIEAARAGEAGRGFAVVASEVKSLASQTAKA 601 Query: 395 TEEIRQQIVSMQEVTTTAVSA 415 TEEIR QI SMQ+VTT+AV A Sbjct: 602 TEEIRTQIASMQDVTTSAVGA 622 >ref|YP_001208489.1| putative methyl-accepting chemotaxis receptor/sensory transducer [Bradyrhizobium sp. ORS 278] emb|CAL80274.1| putative methyl-accepting chemotaxis receptor/sensory transducer [Bradyrhizobium sp. ORS 278] Length = 712 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 282/444 (63%), Positives = 345/444 (77%), Gaps = 26/444 (5%) Query: 1 MLDAQTRLNAILAAAEVSADDATEAARTVGQISNVLAAGNLMAADMTAALSANSSETLDA 60 MLDAQT+LNA+L AAEVSADDAT AAR V Q+ NV+A+GNL+ A M AALSAN S+TL++ Sbjct: 177 MLDAQTQLNAVLGAAEVSADDATAAARFVEQLGNVIASGNLIVAQMAAALSANDSDTLES 236 Query: 61 IEAEFKAGRERVKSNLEDLPNNPAIVAVRDTASRLLVLGEGKTGVFKIRQKELDAIDYGQ 120 +E +FK ++KSNLE LPN + A+ D A +L LGEGK+ VFK R+KELDA DYGQ Sbjct: 237 VERQFKDSLAQLKSNLELLPNGRSTKAINDAAMKLAALGEGKSRVFKTREKELDANDYGQ 296 Query: 121 TILEETRKLNVGLGISVQQLVDAVQKETDSSTFQARQQISLATMVMIGLGALTLVGSFLF 180 T+LEETRKLNVGL ISVQQLV+ V+K T+ +T A ++I T M+G GA TL+GS LF Sbjct: 297 TVLEETRKLNVGLDISVQQLVEGVRKSTEGATVTAGREIEFGTFGMVGAGAATLLGSILF 356 Query: 181 VWLYVGRNILRRIRGLQRSMQLLSDGDLDTEIPQSRQRDEIAVMADALQVFRESMVESRE 240 VWLYVG NILRRI+ LQ++MQ LS GDL TEI S+QRDEI M D LQVFR++M+++R Sbjct: 357 VWLYVGGNILRRIKRLQQAMQNLSSGDLATEIAASKQRDEIGAMVDTLQVFRDNMIQART 416 Query: 241 LTENQNKDRSAKAERASRMEAQIVTFESNVRSALGSLQTAANSMQSTAQSMSATADQSSA 300 L Q ++ +AKAERA+RMEA+I FE+ VRSAL +LQ++A +MQ+TAQSMS TAD+S++ Sbjct: 417 LAAEQERENAAKAERATRMEARIAEFEATVRSALANLQSSATAMQTTAQSMSQTADESNS 476 Query: 301 LVNAVASAAEETSVNVQTVSAGTEELSSSIQEIGRQVVTSAEIARKAVEEASATDSTMQG 360 LV+AVA+AAEETSVNVQTVSAGTE+LSSSI EIGRQVVTSA+IA+KAVEEA ATDSTMQG Sbjct: 477 LVSAVAAAAEETSVNVQTVSAGTEQLSSSIAEIGRQVVTSAQIAKKAVEEAGATDSTMQG 536 Query: 361 LADNAARISVVVDLIQTIASQTNLLALNAX--------------------------TAKA 394 LADNA+R+SVVVDLIQ IASQTNLLALNA TAKA Sbjct: 537 LADNASRVSVVVDLIQAIASQTNLLALNATIEAARAGEAGRGFAVVAQEVKSLASQTAKA 596 Query: 395 TEEIRQQIVSMQEVTTTAVSAXRD 418 T+EIR QI SMQ+V ++AV+A R+ Sbjct: 597 TDEIRAQIASMQQVASSAVAAIRN 620 >ref|YP_001237032.1| methyl-accepting chemotaxis sensory transducer [Bradyrhizobium sp. BTAi1] gb|ABQ33126.1| methyl-accepting chemotaxis sensory transducer [Bradyrhizobium sp. BTAi1] Length = 712 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 290/444 (65%), Positives = 342/444 (77%), Gaps = 26/444 (5%) Query: 1 MLDAQTRLNAILAAAEVSADDATEAARTVGQISNVLAAGNLMAADMTAALSANSSETLDA 60 MLDAQT+LNA+L AAEVSADDAT AAR V Q+ NV A+GNL+ A M AALSAN SETLDA Sbjct: 177 MLDAQTQLNAVLGAAEVSADDATAAARFVEQLGNVTASGNLIVAQMAAALSANDSETLDA 236 Query: 61 IEAEFKAGRERVKSNLEDLPNNPAIVAVRDTASRLLVLGEGKTGVFKIRQKELDAIDYGQ 120 IE +FK ++KSNLE LP+ A++D A +L LGEGK VFK R+KELD+ DYGQ Sbjct: 237 IERQFKDALAQLKSNLELLPSGRGTKAIQDAALKLAALGEGKGRVFKTREKELDSNDYGQ 296 Query: 121 TILEETRKLNVGLGISVQQLVDAVQKETDSSTFQARQQISLATMVMIGLGALTLVGSFLF 180 T+LEETRKLNVGL ISVQQLV+ V+K T+ +T A + I LAT+ M GA TL+GS LF Sbjct: 297 TVLEETRKLNVGLEISVQQLVEGVRKSTEVATSTAGRDIELATLGMAAAGAATLLGSVLF 356 Query: 181 VWLYVGRNILRRIRGLQRSMQLLSDGDLDTEIPQSRQRDEIAVMADALQVFRESMVESRE 240 VWLYVG NILRRI+ LQ++MQLLS GDLDTEI S+Q DEI M D LQVFRE+MV +R Sbjct: 357 VWLYVGGNILRRIKRLQQAMQLLSSGDLDTEIQASKQHDEIGAMVDTLQVFRENMVRART 416 Query: 241 LTENQNKDRSAKAERASRMEAQIVTFESNVRSALGSLQTAANSMQSTAQSMSATADQSSA 300 L Q+++ +AKAERA+RME +I FE+ VRSAL +LQ++A +MQ+TAQSMS TADQS++ Sbjct: 417 LAAEQDRENAAKAERATRMETRIAEFEATVRSALANLQSSATAMQTTAQSMSQTADQSNS 476 Query: 301 LVNAVASAAEETSVNVQTVSAGTEELSSSIQEIGRQVVTSAEIARKAVEEASATDSTMQG 360 LVNAVA+AAEETSVNVQTVSAGTE+LSSSI EIGRQVVTSA+IA+KAVEEA ATDSTMQG Sbjct: 477 LVNAVAAAAEETSVNVQTVSAGTEQLSSSIAEIGRQVVTSAQIAKKAVEEAGATDSTMQG 536 Query: 361 LADNAARISVVVDLIQTIASQTNLLALNAX--------------------------TAKA 394 LADNA+R+SVVVDLIQ IASQTNLLALNA TAKA Sbjct: 537 LADNASRVSVVVDLIQAIASQTNLLALNATIEAARAGEAGRGFAVVAQEVKSLASQTAKA 596 Query: 395 TEEIRQQIVSMQEVTTTAVSAXRD 418 T+EIR QI MQ+V +TAVSA R+ Sbjct: 597 TDEIRTQIAGMQQVASTAVSAIRN 620 >ref|YP_567979.1| chemotaxis sensory transducer [Rhodopseudomonas palustris BisB5] gb|ABE38078.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas palustris BisB5] Length = 712 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 268/447 (59%), Positives = 343/447 (76%), Gaps = 26/447 (5%) Query: 1 MLDAQTRLNAILAAAEVSADDATEAARTVGQISNVLAAGNLMAADMTAALSANSSETLDA 60 ML+AQ ++NA+LA+A +S DDA E+ R + Q+ NV+A NL A+++ AALSA +S+ L+ Sbjct: 177 MLNAQIQMNAVLASANLSQDDAIESGRRIDQLGNVIALRNLAASNLMAALSARNSDALEP 236 Query: 61 IEAEFKAGRERVKSNLEDLPNNPAIVAVRDTASRLLVLGEGKTGVFKIRQKELDAIDYGQ 120 +E FK R++V SNLE + +N A++ A +LL LG+GKT +F++RQKELDA DY Sbjct: 237 VETSFKEARQQVNSNLEGMSDNETTAAIKAAAQKLLALGDGKTSIFRMRQKELDASDYSD 296 Query: 121 TILEETRKLNVGLGISVQQLVDAVQKETDSSTFQARQQISLATMVMIGLGALTLVGSFLF 180 IL+ETRKLNVGLGISV+QLVD+V+ ET ++ +A+QQI+L+T VMIGLGALTLVGS LF Sbjct: 297 LILDETRKLNVGLGISVKQLVDSVRSETSAAAARAQQQIALSTEVMIGLGALTLVGSALF 356 Query: 181 VWLYVGRNILRRIRGLQRSMQLLSDGDLDTEIPQSRQRDEIAVMADALQVFRESMVESRE 240 VWLYVGR+ILRR+ GLQRSMQ LS G+LDTEI + +RDEIAVMA+ L+VFR+SM+++R Sbjct: 357 VWLYVGRSILRRLGGLQRSMQSLSAGNLDTEIDRGNRRDEIAVMAETLEVFRDSMIKARS 416 Query: 241 LTENQNKDRSAKAERASRMEAQIVTFESNVRSALGSLQTAANSMQSTAQSMSATADQSSA 300 L+E Q+KDR+AKAER +R+E +I FE+ VR+A+ LQ + NSMQ TAQSM+ TA++SS+ Sbjct: 417 LSEEQDKDRTAKAERTARIEGRIADFEAKVRAAMEKLQASTNSMQETAQSMAETAERSSS 476 Query: 301 LVNAVASAAEETSVNVQTVSAGTEELSSSIQEIGRQVVTSAEIARKAVEEASATDSTMQG 360 LV AVASAAEETSVNVQTV++GT++L+SSI EI RQV TSAEIA KAV+EA TD+TMQG Sbjct: 477 LVTAVASAAEETSVNVQTVASGTDQLASSINEISRQVTTSAEIANKAVQEAGTTDTTMQG 536 Query: 361 LADNAARISVVVDLIQTIASQTNLLALNAX--------------------------TAKA 394 LADNA RIS V+DLIQ+IASQTNLLALNA TAKA Sbjct: 537 LADNAERISAVIDLIQSIASQTNLLALNATIEAARAGDAGRGFAVVASEVKSLASQTAKA 596 Query: 395 TEEIRQQIVSMQEVTTTAVSAXRDRPQ 421 TEEIR QIV+MQ VT +AV A R+ Q Sbjct: 597 TEEIRSQIVAMQGVTNSAVGAIRNISQ 623 >ref|YP_001989957.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas palustris TIE-1] gb|ACE99481.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas palustris TIE-1] Length = 712 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 263/447 (58%), Positives = 332/447 (74%), Gaps = 26/447 (5%) Query: 1 MLDAQTRLNAILAAAEVSADDATEAARTVGQISNVLAAGNLMAADMTAALSANSSETLDA 60 MLDAQT++NA+L +A +S DDAT R + Q+ NV+A NL+A+++ AALSA+S++ L+ Sbjct: 177 MLDAQTQMNAVLGSANLSQDDATATGRQIEQLGNVIAQSNLIASNLMAALSASSADDLEP 236 Query: 61 IEAEFKAGRERVKSNLEDLPNNPAIVAVRDTASRLLVLGEGKTGVFKIRQKELDAIDYGQ 120 +EA FK R+ V +NL+ LP N ++ A +L+ LG+GKTG FK+RQ ELDA DY Sbjct: 237 VEASFKEARQVVNTNLDGLPQNQTTANIKTAAQKLMALGDGKTGAFKLRQLELDARDYRD 296 Query: 121 TILEETRKLNVGLGISVQQLVDAVQKETDSSTFQARQQISLATMVMIGLGALTLVGSFLF 180 +L+ETRKLNVGLGISV+QLVD V+ ET T A+ QI+LAT VMIGLGA TL+GS LF Sbjct: 297 LLLDETRKLNVGLGISVKQLVDNVRNETTVGTSDAQAQITLATRVMIGLGAATLIGSALF 356 Query: 181 VWLYVGRNILRRIRGLQRSMQLLSDGDLDTEIPQSRQRDEIAVMADALQVFRESMVESRE 240 VWLYVGR+ILRRI GLQ+SMQ LS GDL T I + +RDEIAVMA++L+VFR++M+ +R Sbjct: 357 VWLYVGRSILRRIGGLQKSMQSLSAGDLSTAIERGSRRDEIAVMAESLEVFRDNMIRART 416 Query: 241 LTENQNKDRSAKAERASRMEAQIVTFESNVRSALGSLQTAANSMQSTAQSMSATADQSSA 300 L+E Q+KDR+AKAER R+EA+I FE+ VRSA+ LQ++A+ MQ TA +M+ T++QSSA Sbjct: 417 LSEEQDKDRAAKAERTQRIEARIAEFEATVRSAMEKLQSSADQMQETAHTMATTSEQSSA 476 Query: 301 LVNAVASAAEETSVNVQTVSAGTEELSSSIQEIGRQVVTSAEIARKAVEEASATDSTMQG 360 LV VASAAEETSVNVQTV+ GTE+L+SSI EI RQV TSAEIA +AV EA TD+TMQG Sbjct: 477 LVTTVASAAEETSVNVQTVATGTEQLASSIAEISRQVTTSAEIATRAVREAGETDTTMQG 536 Query: 361 LADNAARISVVVDLIQTIASQTNLLALNAX--------------------------TAKA 394 LADNA RIS V+DLIQ+IASQTNLLALNA TAKA Sbjct: 537 LADNAERISAVIDLIQSIASQTNLLALNATIEAARAGDAGRGFAVVAAEVKDLASQTAKA 596 Query: 395 TEEIRQQIVSMQEVTTTAVSAXRDRPQ 421 TEEIR QI +MQ VT++AV A R+ Q Sbjct: 597 TEEIRAQIAAMQGVTSSAVGAIRNIGQ 623