BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0106.0002.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001208489.1| putative methyl-accepting chemotaxis recepto...   130   6e-29
ref|YP_001237032.1| methyl-accepting chemotaxis sensory transduc...   128   3e-28
ref|NP_946209.1| methyl-accepting chemotaxis receptor/sensory tr...   113   1e-23
ref|YP_001989957.1| methyl-accepting chemotaxis sensory transduc...   112   2e-23
ref|NP_767843.1| methyl-accepting chemotaxis protein [Bradyrhizo...   112   2e-23

>ref|YP_001208489.1| putative methyl-accepting chemotaxis receptor/sensory transducer
           [Bradyrhizobium sp. ORS 278]
 emb|CAL80274.1| putative methyl-accepting chemotaxis receptor/sensory transducer
           [Bradyrhizobium sp. ORS 278]
          Length = 712

 Score =  130 bits (328), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/111 (61%), Positives = 84/111 (75%), Gaps = 2/111 (1%)

Query: 1   MAFRFKLGKPNLKRIHLPQMGVRGSLFAAFAVIAGMALVISAGAGVVLHQLGGTMTDLSG 60
           MA RF   +  +  +  P+ GVRGSLFAAFAVIAGMA+ IS GAG++L  +GGTM +LSG
Sbjct: 1   MAGRFSFSR--MLGVLRPRWGVRGSLFAAFAVIAGMAIAISVGAGLMLRHIGGTMVELSG 58

Query: 61  RDIPRLAASLQLAAQSASLAAQGPGLLAVQSEDALNDRTKKVQDVARRTSR 111
            DIPRL ASLQL AQS+SLA+ GP LL  QSEDALNDR KK+Q++ + T +
Sbjct: 59  SDIPRLTASLQLLAQSSSLASLGPALLGSQSEDALNDRLKKMQEIQKATQQ 109


>ref|YP_001237032.1| methyl-accepting chemotaxis sensory transducer [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ33126.1| methyl-accepting chemotaxis sensory transducer [Bradyrhizobium sp.
           BTAi1]
          Length = 712

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/109 (62%), Positives = 82/109 (75%), Gaps = 2/109 (1%)

Query: 1   MAFRFKLGKPNLKRIHLPQMGVRGSLFAAFAVIAGMALVISAGAGVVLHQLGGTMTDLSG 60
           MA RF      L R+  P+ GVRGSLFAAFAVIAGMA+ IS  AG++L  +GGTM +LS 
Sbjct: 1   MAGRFSFSTA-LGRLR-PRWGVRGSLFAAFAVIAGMAIAISVAAGLMLRHIGGTMVELSS 58

Query: 61  RDIPRLAASLQLAAQSASLAAQGPGLLAVQSEDALNDRTKKVQDVARRT 109
           RDIPRL +SLQL AQS+SLA+ GP LL  QSEDALNDR KK+Q++ + T
Sbjct: 59  RDIPRLTSSLQLLAQSSSLASLGPALLGSQSEDALNDRLKKMQEIQKVT 107


>ref|NP_946209.1| methyl-accepting chemotaxis receptor/sensory transducer
           [Rhodopseudomonas palustris CGA009]
 emb|CAE26300.1| methyl-accepting chemotaxis receptor/sensory transducer
           [Rhodopseudomonas palustris CGA009]
          Length = 712

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 79/104 (75%), Gaps = 4/104 (3%)

Query: 1   MAFRF-KLGKPNLKRIHLPQMGVRGSLFAAFAVIAGMALVISAGAGVVLHQLGGTMTDLS 59
           M+ +F K  +P LK    PQ+G+RGSLFAAF VIAGMA++ISA AG+ LHQLG T+ +LS
Sbjct: 1   MSGKFAKFRRPRLK---FPQLGIRGSLFAAFTVIAGMAILISAWAGISLHQLGRTIAELS 57

Query: 60  GRDIPRLAASLQLAAQSASLAAQGPGLLAVQSEDALNDRTKKVQ 103
           GRDIP+LAASLQLA +S SLA+Q P LL   S + L +R+ +++
Sbjct: 58  GRDIPKLAASLQLATESESLASQAPILLDSLSAEQLRERSARMK 101


>ref|YP_001989957.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas
           palustris TIE-1]
 gb|ACE99481.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas
           palustris TIE-1]
          Length = 712

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 74/98 (75%)

Query: 6   KLGKPNLKRIHLPQMGVRGSLFAAFAVIAGMALVISAGAGVVLHQLGGTMTDLSGRDIPR 65
           K  K    R+  PQ+G+RGSLFAAF VIAGMA++ISA AG+ LHQLG T+ +LSGRDIP+
Sbjct: 4   KFAKFRRLRLKFPQLGIRGSLFAAFTVIAGMAILISAWAGISLHQLGRTIAELSGRDIPK 63

Query: 66  LAASLQLAAQSASLAAQGPGLLAVQSEDALNDRTKKVQ 103
           LAASLQLA +S SLA+Q P LL   S + L +R+ +++
Sbjct: 64  LAASLQLATESESLASQAPILLDSLSAEQLRERSARMK 101


>ref|NP_767843.1| methyl-accepting chemotaxis protein [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC46468.1| bll1203 [Bradyrhizobium japonicum USDA 110]
          Length = 717

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 89/112 (79%), Gaps = 3/112 (2%)

Query: 1   MAFRFKLGK--PNLK-RIHLPQMGVRGSLFAAFAVIAGMALVISAGAGVVLHQLGGTMTD 57
           MA R  +G+    L+ R  +P  GVRGSLF AFAVIAGM LVI+AGAG+ L  LGG MT+
Sbjct: 1   MAIRLGVGRLLGRLRPRFKMPTWGVRGSLFTAFAVIAGMGLVIAAGAGLALQNLGGRMTE 60

Query: 58  LSGRDIPRLAASLQLAAQSASLAAQGPGLLAVQSEDALNDRTKKVQDVARRT 109
           LSGRDIPRLAASLQL+A SASLAAQGP LLA QSEDALN+RTKK++++  +T
Sbjct: 61  LSGRDIPRLAASLQLSALSASLAAQGPALLAAQSEDALNERTKKLRELQEQT 112