BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0104.0111.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774249.1| Rieske (2Fe-2S) domain-containing protein [Brad...   259   8e-68
ref|NP_774546.1| ferredoxin [Bradyrhizobium japonicum USDA 110] ...   166   1e-39
ref|YP_004336270.1| Rieske (2Fe-2S) iron-sulfur domain-containin...   151   2e-35
ref|YP_001240221.1| hypothetical protein BBta_4263 [Bradyrhizobi...   149   2e-34
ref|ZP_08628891.1| hypothetical protein CSIRO_1976 [Bradyrhizobi...   145   1e-33

>ref|NP_774249.1| Rieske (2Fe-2S) domain-containing protein [Bradyrhizobium japonicum
           USDA 110]
 dbj|BAC52874.1| rieske [2Fe-2S] domain protein [Bradyrhizobium japonicum USDA 110]
          Length = 148

 Score =  259 bits (663), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 122/137 (89%), Positives = 129/137 (94%)

Query: 1   MARHIVARTSEIPAGGNKVFGLEGRDIVVFHVNGEFFALLNRCPHEGAPLEKAACVARLT 60
           MARHIVARTSEIP GGNKV  + GRDIVVFHVNGEFFALLNRCPHEGAPL+KAACVARLT
Sbjct: 12  MARHIVARTSEIPPGGNKVVDVAGRDIVVFHVNGEFFALLNRCPHEGAPLDKAACVARLT 71

Query: 61  SPEPGIYQRDRVGEMLRCPWHGWEFDIRNGQSWFDPKRFRIRSYPVAVESGAELQRGPYV 120
           SPEPGIYQR RVGEMLRCPWHGWEFD+R+GQSWFDPKR RIRSYPVAVE G ELQ+GPYV
Sbjct: 72  SPEPGIYQRSRVGEMLRCPWHGWEFDMRSGQSWFDPKRVRIRSYPVAVERGDELQKGPYV 131

Query: 121 AETFPVHIEDNYVIVEV 137
           AETFPVH+ED+YVIVEV
Sbjct: 132 AETFPVHVEDSYVIVEV 148


>ref|NP_774546.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53171.1| bll7906 [Bradyrhizobium japonicum USDA 110]
          Length = 137

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 99/137 (72%)

Query: 1   MARHIVARTSEIPAGGNKVFGLEGRDIVVFHVNGEFFALLNRCPHEGAPLEKAACVARLT 60
           MARH++A   E+P G  K   +EGR I VF++ GE+F L+NRCPH+GA L +   +    
Sbjct: 1   MARHVIAPVDELPPGTRKFLEIEGRPIAVFNIKGEYFGLMNRCPHQGAALCEGPLIGLAQ 60

Query: 61  SPEPGIYQRDRVGEMLRCPWHGWEFDIRNGQSWFDPKRFRIRSYPVAVESGAELQRGPYV 120
           S +PG  +  R+GE++RCPWHGWEFDIR GQS+ DP+RFR+++YP  V  GA + +GPYV
Sbjct: 61  SSDPGEIEYTRLGEIIRCPWHGWEFDIRTGQSYCDPRRFRVKAYPAHVAPGASVVKGPYV 120

Query: 121 AETFPVHIEDNYVIVEV 137
           AET PV +E +YV+VE+
Sbjct: 121 AETIPVKVESDYVVVEL 137


>ref|YP_004336270.1| Rieske (2Fe-2S) iron-sulfur domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gb|AEA28417.1| Rieske (2Fe-2S) iron-sulfur domain protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 145

 Score =  151 bits (382), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/139 (51%), Positives = 93/139 (66%), Gaps = 2/139 (1%)

Query: 1   MARHIVARTSEIPAGGNKVFGLEGRDIVVFHVNGEFFALLNRCPHEGAPLEKAACVARLT 60
           M RH+VAR  ++P G   +  L+GR+I VF+V+GEFFA+ NRCPH+  PL +      ++
Sbjct: 1   MTRHVVARVGDVPPGSRVLVTLDGREIGVFNVDGEFFAVRNRCPHQAGPLCEGILTRPVS 60

Query: 61  SPEPGIYQRDRVGEMLRCPWHGWEFDIRNGQSWFDPKRFRIRSYPVAVESGAELQR--GP 118
           S  PG Y     G +LRCPWH WEFD+  G+SW DP R R+RSYPV VE G    R  GP
Sbjct: 61  STRPGEYAFTEEGGILRCPWHQWEFDLATGRSWCDPDRVRVRSYPVVVERGGADVRVPGP 120

Query: 119 YVAETFPVHIEDNYVIVEV 137
           Y AETFPV +ED YV+V++
Sbjct: 121 YTAETFPVAVEDEYVVVDL 139


>ref|YP_001240221.1| hypothetical protein BBta_4263 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36315.1| hypothetical protein BBta_4263 [Bradyrhizobium sp. BTAi1]
          Length = 137

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 92/137 (67%)

Query: 1   MARHIVARTSEIPAGGNKVFGLEGRDIVVFHVNGEFFALLNRCPHEGAPLEKAACVARLT 60
           M+RH+V    E+P G  +   ++GR+I +F+V+G   ALLNRCPH GA +          
Sbjct: 1   MSRHVVCSADELPPGARRTAFIDGREIALFNVDGRLHALLNRCPHGGARICTGVITGIAQ 60

Query: 61  SPEPGIYQRDRVGEMLRCPWHGWEFDIRNGQSWFDPKRFRIRSYPVAVESGAELQRGPYV 120
           S  PG Y+ +R GE LRCPWHGWEF++  GQSW DP+  R+R+Y V  E+G  L +GPYV
Sbjct: 61  SSGPGDYRLERNGEFLRCPWHGWEFELATGQSWCDPRTTRLRNYDVKRETGGNLVKGPYV 120

Query: 121 AETFPVHIEDNYVIVEV 137
           AE +PV IE++Y+I+E+
Sbjct: 121 AERYPVAIENDYIIIEL 137


>ref|ZP_08628891.1| hypothetical protein CSIRO_1976 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP08250.1| hypothetical protein CSIRO_1976 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 137

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 88/137 (64%)

Query: 1   MARHIVARTSEIPAGGNKVFGLEGRDIVVFHVNGEFFALLNRCPHEGAPLEKAACVARLT 60
           MA+  V    +IP G  KV  + GR+IVVF+V G+F+ALLNRCPHEGA L +        
Sbjct: 1   MAKEKVGLVRDIPPGHRKVVTVRGREIVVFNVKGDFYALLNRCPHEGANLSRGIITGLPE 60

Query: 61  SPEPGIYQRDRVGEMLRCPWHGWEFDIRNGQSWFDPKRFRIRSYPVAVESGAELQRGPYV 120
           S  PG Y+  R GE+LRCPWHGWEFDI+ G+S+ DP+R   R Y  +VES  E   G   
Sbjct: 61  SSAPGCYKLSRPGEILRCPWHGWEFDIKTGKSYCDPQRLFTRQYKTSVESSCERVEGHLT 120

Query: 121 AETFPVHIEDNYVIVEV 137
           AETFPV +E+  V VEV
Sbjct: 121 AETFPVVVEEATVFVEV 137