BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0104.0105.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_486173.1| nitrogen regulatory protein P-II [Rhodopseudomo...   214   3e-54
ref|NP_771588.1| nitrogen regulatory protein PII [Bradyrhizobium...   214   5e-54
ref|ZP_08630101.1| nitrogen regulatory protein [Bradyrhizobiacea...   213   6e-54
ref|YP_004633061.1| nitrogen regulatory protein P-II [Oligotroph...   213   8e-54
ref|NP_948307.1| nitrogen regulatory protein P-II [Rhodopseudomo...   213   9e-54

>ref|YP_486173.1| nitrogen regulatory protein P-II [Rhodopseudomonas palustris HaA2]
 gb|ABD07262.1| nitrogen regulatory protein P-II [Rhodopseudomonas palustris HaA2]
          Length = 112

 Score =  214 bits (546), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 111/112 (99%), Positives = 112/112 (100%)

Query: 1   VKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVDFLPKVK 60
           +KKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVDFLPKVK
Sbjct: 1   MKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVDFLPKVK 60

Query: 61  IEIVIGDDLVEKAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESGLDAI 112
           IEIVIGDDLVEKAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESGLDAI
Sbjct: 61  IEIVIGDDLVEKAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESGLDAI 112


>ref|NP_771588.1| nitrogen regulatory protein PII [Bradyrhizobium japonicum USDA 110]
 sp|P14179.2|GLNB_BRAJA RecName: Full=Nitrogen regulatory protein P-II
 dbj|BAC50213.1| nitrogen regulatory protein PII [Bradyrhizobium japonicum USDA 110]
          Length = 112

 Score =  214 bits (544), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 110/112 (98%), Positives = 112/112 (100%)

Query: 1   VKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVDFLPKVK 60
           +KKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVDFLPKVK
Sbjct: 1   MKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVDFLPKVK 60

Query: 61  IEIVIGDDLVEKAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESGLDAI 112
           IEIVIGDDLVE+AIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESGLDAI
Sbjct: 61  IEIVIGDDLVERAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESGLDAI 112


>ref|ZP_08630101.1| nitrogen regulatory protein [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP07195.1| nitrogen regulatory protein [Bradyrhizobiaceae bacterium SG-6C]
          Length = 112

 Score =  213 bits (543), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 110/112 (98%), Positives = 112/112 (100%)

Query: 1   VKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVDFLPKVK 60
           +KKIEAIIKPFKLDEVKEALQEVG+QGITVTEAKGFGRQKGHAELYRGAEYIVDFLPKVK
Sbjct: 1   MKKIEAIIKPFKLDEVKEALQEVGIQGITVTEAKGFGRQKGHAELYRGAEYIVDFLPKVK 60

Query: 61  IEIVIGDDLVEKAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESGLDAI 112
           IEIVIGDDLVEKAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESGLDAI
Sbjct: 61  IEIVIGDDLVEKAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESGLDAI 112


>ref|YP_004633061.1| nitrogen regulatory protein P-II [Oligotropha carboxidovorans OM5]
 gb|AEI03243.1| nitrogen regulatory protein P-II [Oligotropha carboxidovorans OM4]
 gb|AEI06820.1| nitrogen regulatory protein P-II [Oligotropha carboxidovorans OM5]
          Length = 114

 Score =  213 bits (542), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 109/112 (97%), Positives = 112/112 (100%)

Query: 1   VKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVDFLPKVK 60
           VKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEY+VDFLPKVK
Sbjct: 3   VKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYVVDFLPKVK 62

Query: 61  IEIVIGDDLVEKAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESGLDAI 112
           IEIVIGDDLV+KAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGE+GLDAI
Sbjct: 63  IEIVIGDDLVDKAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGETGLDAI 114


>ref|NP_948307.1| nitrogen regulatory protein P-II [Rhodopseudomonas palustris
           CGA009]
 ref|YP_570029.1| nitrogen regulatory protein P-II [Rhodopseudomonas palustris BisB5]
 ref|YP_001992291.1| nitrogen regulatory protein P-II [Rhodopseudomonas palustris TIE-1]
 ref|YP_004108799.1| nitrogen regulatory protein P-II [Rhodopseudomonas palustris DX-1]
 gb|AAK73282.1| regulatory protein PII [Rhodopseudomonas palustris]
 emb|CAE28407.1| nitrogen regulatory protein P-II [Rhodopseudomonas palustris
           CGA009]
 gb|ABE40128.1| nitrogen regulatory protein P-II [Rhodopseudomonas palustris BisB5]
 gb|ACF01816.1| nitrogen regulatory protein P-II [Rhodopseudomonas palustris TIE-1]
 gb|ADU44066.1| nitrogen regulatory protein P-II [Rhodopseudomonas palustris DX-1]
          Length = 112

 Score =  213 bits (541), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 110/112 (98%), Positives = 111/112 (99%)

Query: 1   VKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVDFLPKVK 60
           +KKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVDFLPKVK
Sbjct: 1   MKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVDFLPKVK 60

Query: 61  IEIVIGDDLVEKAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESGLDAI 112
           IEIVI DDLVEKAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESGLDAI
Sbjct: 61  IEIVIADDLVEKAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESGLDAI 112