BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0100.p (407 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001994255.1| branched-chain amino acid ABC transporter pe... 701 0.0 ref|YP_571511.1| extracellular ligand-binding receptor [Rhodopse... 701 0.0 ref|NP_950141.1| branched chain amino-acid ABC transporter subst... 700 0.0 ref|YP_488278.1| extracellular ligand-binding receptor [Rhodopse... 699 0.0 ref|YP_004111268.1| extracellular ligand-binding receptor [Rhodo... 691 0.0 >ref|YP_001994255.1| branched-chain amino acid ABC transporter periplasmic protein [Rhodopseudomonas palustris TIE-1] gb|ACF03780.1| putative ABC-type branched-chain amino acid transporter, periplasmic binding protein [Rhodopseudomonas palustris TIE-1] Length = 406 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/379 (88%), Positives = 360/379 (94%) Query: 27 YGPGVTDTEVKIGQTMPYSGPASAYGTQGRMEEAYYAMINAKGGVNGRKIKLISLDDAYS 86 YGPGVTDTE+KIGQTMPYSGPASAYG QG +E+AYY M+NAKGGVNGRKIKLISLDDAYS Sbjct: 27 YGPGVTDTEIKIGQTMPYSGPASAYGVQGHVEDAYYTMVNAKGGVNGRKIKLISLDDAYS 86 Query: 87 PPKTVEQTRRLVEQDEVLAIIGTIGTPTNSAIQKYLNQKKVPQIFISTGAAKWDDPKNFP 146 PPKTVEQTR+LVEQ+EVLAIIGTIGTPTN+AIQKYLN KKVPQIFISTGAAKWDDPKNFP Sbjct: 87 PPKTVEQTRKLVEQEEVLAIIGTIGTPTNTAIQKYLNAKKVPQIFISTGAAKWDDPKNFP 146 Query: 147 WTTQLYPPYQMEGMIFAKYLLKNKPDAKLGVFSQNDDAGKDYVKGLKDGLGDKAKTMIVK 206 WTTQLYPPYQMEGMIFAKYLLKNKPDAKLGVFSQNDDAGKDYVKGLKDGLGDKAKTMIVK Sbjct: 147 WTTQLYPPYQMEGMIFAKYLLKNKPDAKLGVFSQNDDAGKDYVKGLKDGLGDKAKTMIVK 206 Query: 207 EVTYEVSDPTVDSQIVSLKASGADTLFTMATPKFGAQAIRKVYELGWKPLNYVVSVSSSI 266 EVTYEV+DPTVDSQIV+LKASGADTLFTMATPKFGAQAIRKV+EL WKPLN+VVSVSSSI Sbjct: 207 EVTYEVTDPTVDSQIVALKASGADTLFTMATPKFGAQAIRKVHELNWKPLNFVVSVSSSI 266 Query: 267 KGVMEPAGIEASKGLLTALAFKTPTDPSWENAADVKEFKEFLAKWYPQGDIADGSNVTGY 326 KGV+EPAG EAS GLLTALA KTPTDP +EN ADVKEFK+FLAKWYP+GDIADGS VTGY Sbjct: 267 KGVLEPAGKEASTGLLTALAAKTPTDPRFENDADVKEFKDFLAKWYPKGDIADGSTVTGY 326 Query: 327 ISAYMTVKIIEMCGDDLTRENLLKQATNLNKVVAPLLLPGIAISTRPDRYAPFTQMQIAT 386 ISAYMTVK++E CGD+LTR+NLLKQATN+ APLLLPGI ISTRPDRYAP+TQMQIA Sbjct: 327 ISAYMTVKVLEACGDNLTRDNLLKQATNIKPTAAPLLLPGIKISTRPDRYAPYTQMQIAR 386 Query: 387 FDGKSWVPQGETFNTDAAA 405 FDGKSWVP+GE FNTDAA+ Sbjct: 387 FDGKSWVPEGEVFNTDAAS 405 >ref|YP_571511.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisB5] gb|ABE41610.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisB5] Length = 406 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/379 (88%), Positives = 359/379 (94%) Query: 27 YGPGVTDTEVKIGQTMPYSGPASAYGTQGRMEEAYYAMINAKGGVNGRKIKLISLDDAYS 86 YGPGVTDTE+KIGQTMPYSGPASAYG QG +E+AY+AM+NAKGGVNGRKIKLISLDDAYS Sbjct: 27 YGPGVTDTEIKIGQTMPYSGPASAYGVQGHIEDAYFAMVNAKGGVNGRKIKLISLDDAYS 86 Query: 87 PPKTVEQTRRLVEQDEVLAIIGTIGTPTNSAIQKYLNQKKVPQIFISTGAAKWDDPKNFP 146 PPKTVEQTRRLVEQDEVLAI+GTIGTPTNSAIQKYLN KKVP IF+STGAAKWDDPKNFP Sbjct: 87 PPKTVEQTRRLVEQDEVLAIVGTIGTPTNSAIQKYLNGKKVPHIFLSTGAAKWDDPKNFP 146 Query: 147 WTTQLYPPYQMEGMIFAKYLLKNKPDAKLGVFSQNDDAGKDYVKGLKDGLGDKAKTMIVK 206 WTTQLYPPYQMEGMIFAKYLLKNKPDAKLGVFSQNDDAGKDYVKGLKDGLGDKAKTMIVK Sbjct: 147 WTTQLYPPYQMEGMIFAKYLLKNKPDAKLGVFSQNDDAGKDYVKGLKDGLGDKAKTMIVK 206 Query: 207 EVTYEVSDPTVDSQIVSLKASGADTLFTMATPKFGAQAIRKVYELGWKPLNYVVSVSSSI 266 EVTYEV+DPTVDSQIV+LKASGADTLFTMATPKFGAQAIRKV+ELGWKPLN+VVSVSSSI Sbjct: 207 EVTYEVTDPTVDSQIVALKASGADTLFTMATPKFGAQAIRKVHELGWKPLNFVVSVSSSI 266 Query: 267 KGVMEPAGIEASKGLLTALAFKTPTDPSWENAADVKEFKEFLAKWYPQGDIADGSNVTGY 326 KG ++PAGIEAS GLLTALA KTPTDP +EN ADVKE K+FLAKWYP+GDIADGS VTGY Sbjct: 267 KGALQPAGIEASTGLLTALAAKTPTDPRFENDADVKELKDFLAKWYPKGDIADGSTVTGY 326 Query: 327 ISAYMTVKIIEMCGDDLTRENLLKQATNLNKVVAPLLLPGIAISTRPDRYAPFTQMQIAT 386 ISA+MTVK++E CGD+LTRENLLKQATN+ APLLLPGI ISTRPDRYAP+TQMQIA Sbjct: 327 ISAFMTVKVLEACGDNLTRENLLKQATNIPPTAAPLLLPGIKISTRPDRYAPYTQMQIAR 386 Query: 387 FDGKSWVPQGETFNTDAAA 405 FDG+SWVP+GE FNTD AA Sbjct: 387 FDGRSWVPEGEVFNTDTAA 405 >ref|NP_950141.1| branched chain amino-acid ABC transporter substrate-binding protein [Rhodopseudomonas palustris CGA009] emb|CAE30247.1| possible branched-chain amino acid transport system substrate-binding protein [Rhodopseudomonas palustris CGA009] Length = 406 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/379 (88%), Positives = 360/379 (94%) Query: 27 YGPGVTDTEVKIGQTMPYSGPASAYGTQGRMEEAYYAMINAKGGVNGRKIKLISLDDAYS 86 YGPGVTDTE+KIGQTMPYSGPASAYG QG +E+AYY M+NAKGGVNGRKIKLISLDDAYS Sbjct: 27 YGPGVTDTEIKIGQTMPYSGPASAYGVQGHVEDAYYTMVNAKGGVNGRKIKLISLDDAYS 86 Query: 87 PPKTVEQTRRLVEQDEVLAIIGTIGTPTNSAIQKYLNQKKVPQIFISTGAAKWDDPKNFP 146 PPKTVEQTR+LVEQ+EVLAIIGTIGTPTN+AIQKYLN KKVPQIFISTGAAKWDDPKNFP Sbjct: 87 PPKTVEQTRKLVEQEEVLAIIGTIGTPTNTAIQKYLNAKKVPQIFISTGAAKWDDPKNFP 146 Query: 147 WTTQLYPPYQMEGMIFAKYLLKNKPDAKLGVFSQNDDAGKDYVKGLKDGLGDKAKTMIVK 206 WTTQLYPPYQMEGMIFAKYLLK+KPDAKLGVFSQNDDAGKDYVKGLKDGLGDKAKTMIVK Sbjct: 147 WTTQLYPPYQMEGMIFAKYLLKHKPDAKLGVFSQNDDAGKDYVKGLKDGLGDKAKTMIVK 206 Query: 207 EVTYEVSDPTVDSQIVSLKASGADTLFTMATPKFGAQAIRKVYELGWKPLNYVVSVSSSI 266 EVTYEV+DPTVDSQIV+LKASGADTLFTMATPKFGAQAIRKV+EL WKPLN+VVSVSSSI Sbjct: 207 EVTYEVTDPTVDSQIVALKASGADTLFTMATPKFGAQAIRKVHELNWKPLNFVVSVSSSI 266 Query: 267 KGVMEPAGIEASKGLLTALAFKTPTDPSWENAADVKEFKEFLAKWYPQGDIADGSNVTGY 326 KGV+EPAG EAS GLLTALA KTPTDP +EN ADVKEFK+FLAKWYP+GDIADGS VTGY Sbjct: 267 KGVLEPAGKEASTGLLTALAAKTPTDPRFENDADVKEFKDFLAKWYPKGDIADGSTVTGY 326 Query: 327 ISAYMTVKIIEMCGDDLTRENLLKQATNLNKVVAPLLLPGIAISTRPDRYAPFTQMQIAT 386 ISAYMTVK++E CGD+LTR+NLLKQATN+ APLLLPGI ISTRPDRYAP+TQMQIA Sbjct: 327 ISAYMTVKVLEACGDNLTRDNLLKQATNIKPTAAPLLLPGIKISTRPDRYAPYTQMQIAR 386 Query: 387 FDGKSWVPQGETFNTDAAA 405 FDGKSWVP+GE FNTDAA+ Sbjct: 387 FDGKSWVPEGEVFNTDAAS 405 >ref|YP_488278.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris HaA2] gb|ABD09367.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris HaA2] Length = 406 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/387 (86%), Positives = 360/387 (93%) Query: 19 QPALADKKYGPGVTDTEVKIGQTMPYSGPASAYGTQGRMEEAYYAMINAKGGVNGRKIKL 78 QPA A K+YGPGVTDTE+KIGQTMPYSGPASAYG QG ++ AYYAMINAKGGVNGRKI L Sbjct: 19 QPAFAQKQYGPGVTDTEIKIGQTMPYSGPASAYGVQGHVQNAYYAMINAKGGVNGRKINL 78 Query: 79 ISLDDAYSPPKTVEQTRRLVEQDEVLAIIGTIGTPTNSAIQKYLNQKKVPQIFISTGAAK 138 ISLDDAYSPPKTVEQTR+LVEQDEVLAI+GT+GTPTNSA QKYLN KKVPQIFISTGAAK Sbjct: 79 ISLDDAYSPPKTVEQTRKLVEQDEVLAIVGTVGTPTNSATQKYLNGKKVPQIFISTGAAK 138 Query: 139 WDDPKNFPWTTQLYPPYQMEGMIFAKYLLKNKPDAKLGVFSQNDDAGKDYVKGLKDGLGD 198 WDDPK FPWTTQLYPPYQMEGMIFAKYLLKNKPDAKLGVFSQNDDAGKDYVKGLK+GLGD Sbjct: 139 WDDPKTFPWTTQLYPPYQMEGMIFAKYLLKNKPDAKLGVFSQNDDAGKDYVKGLKEGLGD 198 Query: 199 KAKTMIVKEVTYEVSDPTVDSQIVSLKASGADTLFTMATPKFGAQAIRKVYELGWKPLNY 258 KAKTMIVKEVTYEV+DPTVDSQIV+LKASGADTLFTMATPKFGAQAIRKV+EL WKPLN+ Sbjct: 199 KAKTMIVKEVTYEVTDPTVDSQIVALKASGADTLFTMATPKFGAQAIRKVHELNWKPLNF 258 Query: 259 VVSVSSSIKGVMEPAGIEASKGLLTALAFKTPTDPSWENAADVKEFKEFLAKWYPQGDIA 318 VVSV+SSIKGV+EPAG EAS GLLTALA KTPTDP +EN ADVKEFKEFLAKW+P+GDIA Sbjct: 259 VVSVASSIKGVLEPAGSEASTGLLTALAMKTPTDPRFENDADVKEFKEFLAKWFPKGDIA 318 Query: 319 DGSNVTGYISAYMTVKIIEMCGDDLTRENLLKQATNLNKVVAPLLLPGIAISTRPDRYAP 378 DGS V GYISAYMT K +E CGD+LTR+NLLKQATN+ VAPLLLPG+ ISTRPDRYAP Sbjct: 319 DGSVVIGYISAYMTAKTLEACGDNLTRDNLLKQATNIKPTVAPLLLPGVKISTRPDRYAP 378 Query: 379 FTQMQIATFDGKSWVPQGETFNTDAAA 405 +TQMQIA FDGKSWVP+GE FNTDA + Sbjct: 379 YTQMQIARFDGKSWVPEGEVFNTDATS 405 >ref|YP_004111268.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] gb|ADU46535.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] Length = 406 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/381 (86%), Positives = 359/381 (94%) Query: 25 KKYGPGVTDTEVKIGQTMPYSGPASAYGTQGRMEEAYYAMINAKGGVNGRKIKLISLDDA 84 K+YGPGVTDTE+KIGQTMPYSGPASAYG QG+++ AYYAMINAKGG+NGRKI LISLDDA Sbjct: 25 KQYGPGVTDTEIKIGQTMPYSGPASAYGVQGQVQNAYYAMINAKGGINGRKINLISLDDA 84 Query: 85 YSPPKTVEQTRRLVEQDEVLAIIGTIGTPTNSAIQKYLNQKKVPQIFISTGAAKWDDPKN 144 YSPPKTVEQTR+LVEQ+EVLAI+GT+GTPTNSA QKYLN KKVPQ+FISTGAAKWDDPKN Sbjct: 85 YSPPKTVEQTRKLVEQEEVLAIVGTVGTPTNSATQKYLNTKKVPQVFISTGAAKWDDPKN 144 Query: 145 FPWTTQLYPPYQMEGMIFAKYLLKNKPDAKLGVFSQNDDAGKDYVKGLKDGLGDKAKTMI 204 FPWTTQLYPPYQMEGMIFAKYLLK+KPDAKLGVFSQNDD+GKDYVKGLKDGLGDKAKTMI Sbjct: 145 FPWTTQLYPPYQMEGMIFAKYLLKHKPDAKLGVFSQNDDSGKDYVKGLKDGLGDKAKTMI 204 Query: 205 VKEVTYEVSDPTVDSQIVSLKASGADTLFTMATPKFGAQAIRKVYELGWKPLNYVVSVSS 264 VKEVTYEV+DPTVDSQIV+LKASGADTLFTMATPKFGAQAIRKV+EL WKPLN+VVSV+S Sbjct: 205 VKEVTYEVTDPTVDSQIVALKASGADTLFTMATPKFGAQAIRKVHELNWKPLNFVVSVAS 264 Query: 265 SIKGVMEPAGIEASKGLLTALAFKTPTDPSWENAADVKEFKEFLAKWYPQGDIADGSNVT 324 SIKGV+EPAG EAS GLLTALA KTPTDP +EN ADVKEF+EFLAKW+P+GDIADGS V Sbjct: 265 SIKGVLEPAGSEASTGLLTALAMKTPTDPRFENDADVKEFREFLAKWFPKGDIADGSVVI 324 Query: 325 GYISAYMTVKIIEMCGDDLTRENLLKQATNLNKVVAPLLLPGIAISTRPDRYAPFTQMQI 384 GYISAYMTVK +E CGD+LTR+NLLKQATN+ APLLLPGI ISTRPDRYAP+TQMQI Sbjct: 325 GYISAYMTVKTLEACGDNLTRDNLLKQATNIKPTTAPLLLPGIKISTRPDRYAPYTQMQI 384 Query: 385 ATFDGKSWVPQGETFNTDAAA 405 A FDGKSWVP+GE FNTDAA+ Sbjct: 385 ARFDGKSWVPEGEIFNTDAAS 405