BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0083.p (226 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768020.1| thioredoxin-like protein [Bradyrhizobium japoni... 312 2e-83 ref|YP_534717.1| thioredoxin-like protein [Rhodopseudomonas palu... 302 2e-80 pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of T... 294 8e-78 ref|YP_568074.1| thioredoxin-like protein [Rhodopseudomonas palu... 293 2e-77 ref|ZP_07025410.1| Redoxin domain protein [Afipia sp. 1NLS2] >gi... 286 1e-75 >ref|NP_768020.1| thioredoxin-like protein [Bradyrhizobium japonicum USDA 110] sp|P43221.1|TLPA_BRAJA RecName: Full=Thiol:disulfide interchange protein tlpA; AltName: Full=Cytochrome c biogenesis protein tlpA emb|CAA80671.1| thioredoxin-like protein [Bradyrhizobium japonicum] dbj|BAC46645.1| thioredoxin-like protein [Bradyrhizobium japonicum USDA 110] Length = 221 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 155/208 (74%), Positives = 176/208 (84%), Gaps = 4/208 (1%) Query: 12 RPTAKWRIPLVIGAVLAGAVIGYVGVSSL---RHPAGGDIACNSAVALAKKIAPLAHGEV 68 +P+A RIPLVI V G + G+ + L R P G D AC +AVA A+KIAPLAHGEV Sbjct: 5 KPSATRRIPLVIATVAVGGLAGFAALYGLGLSRAPTG-DPACRAAVATAQKIAPLAHGEV 63 Query: 69 AALTMATTPLRLPDLTFEDANGQPKKLSDWRGKTVLVNLWATWCVPCRKEMPALDSLQTK 128 AALTMA+ PL+LPDL FEDA+G+PKKLSD+RGKT+LVNLWATWCVPCRKEMPALD LQ K Sbjct: 64 AALTMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGK 123 Query: 129 LGGKDFEVVAINIDTRDPDKPKNFLKEANLTNLGYFSDQKAKVFQDLKNIGKALGMPTSV 188 L G +FEVVAINIDTRDP+KPK FLKEANLT LGYF+DQKAKVFQDLK IG+ALGMPTSV Sbjct: 124 LSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSV 183 Query: 189 LVDGQGCEIANIAGPAEWASDDAIKLVK 216 LVD QGCEIA IAGPAEWAS+DA+KL++ Sbjct: 184 LVDPQGCEIATIAGPAEWASEDALKLIR 211 >ref|YP_534717.1| thioredoxin-like protein [Rhodopseudomonas palustris BisB18] gb|ABD90398.1| Thioredoxin-like [Rhodopseudomonas palustris BisB18] Length = 224 Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 150/224 (66%), Positives = 173/224 (77%), Gaps = 3/224 (1%) Query: 1 MPETTPPNPTARPTAKWRIPLVIGAVLAGAVIGYVGV---SSLRHPAGGDIACNSAVALA 57 M + +P +P R +A RIP+++ A+L G G+ GV +L+ GD AC AV LA Sbjct: 1 MTDDSPKSPAPRRSASRRIPIILAAMLIGTAAGFAGVYGIGALKRNPPGDPACRPAVDLA 60 Query: 58 KKIAPLAHGEVAALTMATTPLRLPDLTFEDANGQPKKLSDWRGKTVLVNLWATWCVPCRK 117 +KIAPLA GEVAALTMAT PLR+P L F DA GQPK L+DWRGKT+LVNLWATWCVPCRK Sbjct: 61 QKIAPLAKGEVAALTMATAPLRIPQLAFSDAAGQPKTLADWRGKTILVNLWATWCVPCRK 120 Query: 118 EMPALDSLQTKLGGKDFEVVAINIDTRDPDKPKNFLKEANLTNLGYFSDQKAKVFQDLKN 177 EMPALD+LQ KLG FEVVAINIDTRDP KPK FL E LT LGYF+D AKVFQDLK Sbjct: 121 EMPALDNLQAKLGSDRFEVVAINIDTRDPAKPKAFLTEGGLTRLGYFADPNAKVFQDLKA 180 Query: 178 IGKALGMPTSVLVDGQGCEIANIAGPAEWASDDAIKLVKAALAP 221 +G+ALGMPTSVL+DG GCEI IAGPAEW SDDA+KL+ AA+AP Sbjct: 181 VGRALGMPTSVLMDGAGCEIGTIAGPAEWDSDDALKLINAAMAP 224 >pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From Bradyrhizobium Japonicum pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From Bradyrhizobium Japonicum Length = 186 Score = 294 bits (752), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 141/171 (82%), Positives = 157/171 (91%) Query: 46 GDIACNSAVALAKKIAPLAHGEVAALTMATTPLRLPDLTFEDANGQPKKLSDWRGKTVLV 105 GD AC +AVA A+KIAPLAHGEVAALTMA+ PL+LPDL FEDA+G+PKKLSD+RGKT+LV Sbjct: 6 GDPACRAAVATAQKIAPLAHGEVAALTMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLV 65 Query: 106 NLWATWCVPCRKEMPALDSLQTKLGGKDFEVVAINIDTRDPDKPKNFLKEANLTNLGYFS 165 NLWATWCVPCRKEMPALD LQ KL G +FEVVAINIDTRDP+KPK FLKEANLT LGYF+ Sbjct: 66 NLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFN 125 Query: 166 DQKAKVFQDLKNIGKALGMPTSVLVDGQGCEIANIAGPAEWASDDAIKLVK 216 DQKAKVFQDLK IG+ALGMPTSVLVD QGCEIA IAGPAEWAS+DA+KL++ Sbjct: 126 DQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIR 176 >ref|YP_568074.1| thioredoxin-like protein [Rhodopseudomonas palustris BisB5] gb|ABE38173.1| Thioredoxin-like [Rhodopseudomonas palustris BisB5] Length = 222 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 145/221 (65%), Positives = 171/221 (77%), Gaps = 1/221 (0%) Query: 1 MPETTP-PNPTARPTAKWRIPLVIGAVLAGAVIGYVGVSSLRHPAGGDIACNSAVALAKK 59 M ET P P P R + I I ++ G G++ L+ A GD AC A+ALA++ Sbjct: 1 MTETQPDPVPPRRAGRRTIILAAIAVLVVAGAAGVYGIAGLQRNASGDPACRPALALAQQ 60 Query: 60 IAPLAHGEVAALTMATTPLRLPDLTFEDANGQPKKLSDWRGKTVLVNLWATWCVPCRKEM 119 + PLA GE+AA+TMA++PL+LPDL FED +GQPKKLSD+RG+T+LVNLWATWCVPCRKEM Sbjct: 61 LKPLARGEMAAVTMASSPLKLPDLAFEDGSGQPKKLSDFRGRTLLVNLWATWCVPCRKEM 120 Query: 120 PALDSLQTKLGGKDFEVVAINIDTRDPDKPKNFLKEANLTNLGYFSDQKAKVFQDLKNIG 179 PALD+LQ KLG DFEVVAINIDTRDP KPK FL++ LT L YFSD A+VFQDLK IG Sbjct: 121 PALDNLQAKLGSADFEVVAINIDTRDPAKPKKFLEDEKLTRLSYFSDASARVFQDLKGIG 180 Query: 180 KALGMPTSVLVDGQGCEIANIAGPAEWASDDAIKLVKAALA 220 +ALGMPTSVLVDGQGCEIA IAGPAEW S DA+ LVKA+LA Sbjct: 181 RALGMPTSVLVDGQGCEIATIAGPAEWDSADALALVKASLA 221 >ref|ZP_07025410.1| Redoxin domain protein [Afipia sp. 1NLS2] gb|EFI52552.1| Redoxin domain protein [Afipia sp. 1NLS2] Length = 219 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 144/222 (64%), Positives = 170/222 (76%), Gaps = 8/222 (3%) Query: 1 MPETTPPNPTARPTAKWRIPLVIGAVLAG---AVIGYVGVSSLRHPAGGDIACNSAVALA 57 M E TPP +RP RIP+ + V+ G A + G+ L+ A GD C AV LA Sbjct: 1 MTEQTPPT-RSRP----RIPMALATVIIGVGAATVAIYGMRGLQGNASGDPVCRPAVNLA 55 Query: 58 KKIAPLAHGEVAALTMATTPLRLPDLTFEDANGQPKKLSDWRGKTVLVNLWATWCVPCRK 117 +K+ PLA GEVAALTMA+ PLR+PDLTF+DA+G+ +KLS++RG+T+LVNLWATWCVPCR+ Sbjct: 56 QKLKPLAQGEVAALTMASQPLRVPDLTFDDASGKSRKLSEFRGRTLLVNLWATWCVPCRR 115 Query: 118 EMPALDSLQTKLGGKDFEVVAINIDTRDPDKPKNFLKEANLTNLGYFSDQKAKVFQDLKN 177 EMPALD LQ KLGG FEVVAINIDTRDP+KPKNFLK+ LT L YF D AKVFQDLK Sbjct: 116 EMPALDQLQAKLGGPKFEVVAINIDTRDPEKPKNFLKDGGLTKLSYFYDNSAKVFQDLKA 175 Query: 178 IGKALGMPTSVLVDGQGCEIANIAGPAEWASDDAIKLVKAAL 219 G+ALGMPTS+LVD GCEIA IAGPAEWAS DA+KL+ AAL Sbjct: 176 AGRALGMPTSMLVDPSGCEIATIAGPAEWASGDAVKLITAAL 217