BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0081.p (285 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_372588.1| LysR family transcriptional regulator [Burkhold... 394 e-108 ref|YP_002233940.1| LysR family regulatory protein [Burkholderia... 391 e-107 ref|YP_624034.1| LysR family transcriptional regulator [Burkhold... 389 e-106 emb|CAQ36913.1| hypothetical protein RSMK03137 [Ralstonia solana... 343 3e-92 gb|AEG71974.1| hth-type transcriptional regulator ilvr (isoleuci... 341 6e-92 >ref|YP_372588.1| LysR family transcriptional regulator [Burkholderia sp. 383] gb|ABB11944.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 285 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/278 (69%), Positives = 230/278 (82%) Query: 3 MKALDIEAVQAFVLVADLSSFTRAAQAMETTQSAISLKIRRLEDGLGRRLLERTPRLVRL 62 MK LDIEAVQAFVL ADL SFTRAA+AM+TTQSA+SLKI+RLEDGLGRRLLERTPR VRL Sbjct: 1 MKTLDIEAVQAFVLTADLKSFTRAAEAMDTTQSAVSLKIKRLEDGLGRRLLERTPRQVRL 60 Query: 63 SAEGAAFLGAARNLVAAHQSAIGSFAVEHRRLVVGISHHIVGSELASLLKRMNTTDPGVV 122 SA+G AFL AR LVAAHQ AIG+F RRLV+G+SHH+VG++L LL+RM+ +PG+V Sbjct: 61 SADGTAFLEPARELVAAHQGAIGAFGAGQRRLVIGVSHHVVGADLPMLLRRMSEAEPGLV 120 Query: 123 IQLHVDTSRSVLSAFDDGKLDAAIVLRHDAKRRDGDVLFEELFGWMAAPDFHHRPGEPLR 182 +++ V SR VL AFD G+LDAA+ L+HD++R DG+ L E FGWMAA DF + P +PLR Sbjct: 121 LEIRVAASRDVLDAFDRGQLDAAVALQHDSRRLDGETLLSESFGWMAATDFEYHPPQPLR 180 Query: 183 LATQAEPCSVRAMAIEVLDAAGIAWTEAFVGGGLSTIGAALSAGLAVAALARRVAPADTV 242 LATQAEPCSVR MAI LD G+AWTE FVGGG++TIGAA+SAGLAVAAL RVAP T+ Sbjct: 181 LATQAEPCSVRRMAIGALDEGGVAWTEVFVGGGVATIGAAVSAGLAVAALGHRVAPVGTI 240 Query: 243 DLGPKLGLPPLPSRDVVLHSKLSDARTRQALRTLGAAF 280 D+G + GLPPLP+RDVVL+S L+DAR RQALRTLGAA Sbjct: 241 DVGARYGLPPLPTRDVVLYSNLTDARARQALRTLGAAL 278 >ref|YP_002233940.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] emb|CAR55181.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 285 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/278 (68%), Positives = 230/278 (82%) Query: 3 MKALDIEAVQAFVLVADLSSFTRAAQAMETTQSAISLKIRRLEDGLGRRLLERTPRLVRL 62 MK LDIEAVQAFVL ADL SFTRAA+ ++TTQSA+SLKI+RLEDGLGRRLLERTPR VRL Sbjct: 1 MKTLDIEAVQAFVLTADLKSFTRAAEVLDTTQSAVSLKIKRLEDGLGRRLLERTPRQVRL 60 Query: 63 SAEGAAFLGAARNLVAAHQSAIGSFAVEHRRLVVGISHHIVGSELASLLKRMNTTDPGVV 122 SA+G AFL AR LVAAH AI +F RRLV+G+SHH+VG++L LL+RM+ +P +V Sbjct: 61 SADGTAFLEPARELVAAHHGAISAFGTSQRRLVIGVSHHVVGADLPMLLRRMSEAEPALV 120 Query: 123 IQLHVDTSRSVLSAFDDGKLDAAIVLRHDAKRRDGDVLFEELFGWMAAPDFHHRPGEPLR 182 +++ V SR VL AFD G+LDAA+ L+HD++R DG+ + E FGWMAA DF +RP +PLR Sbjct: 121 LEIRVAASRDVLDAFDRGQLDAAVALQHDSRRLDGETILSESFGWMAAADFEYRPPQPLR 180 Query: 183 LATQAEPCSVRAMAIEVLDAAGIAWTEAFVGGGLSTIGAALSAGLAVAALARRVAPADTV 242 LATQAEPCSVR MA++ LD AG+AWTE FVGGG++TIGAA+SAGLAVAAL RVAPA TV Sbjct: 181 LATQAEPCSVRRMAVDALDQAGVAWTEVFVGGGVATIGAAVSAGLAVAALGHRVAPAGTV 240 Query: 243 DLGPKLGLPPLPSRDVVLHSKLSDARTRQALRTLGAAF 280 D+G + GLPPLP+RDVVL+S L+DAR RQALRTLGAA Sbjct: 241 DVGMRYGLPPLPTRDVVLYSSLTDARARQALRTLGAAL 278 >ref|YP_624034.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] ref|YP_837821.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] ref|YP_001776969.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ABF79061.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gb|ABK10928.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gb|ACA92479.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 285 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/278 (68%), Positives = 230/278 (82%) Query: 3 MKALDIEAVQAFVLVADLSSFTRAAQAMETTQSAISLKIRRLEDGLGRRLLERTPRLVRL 62 MK LDIEAVQAFVL ADL SFTRAA+A++TTQSA+SLKI+RLEDGLGRRLLERTPR VRL Sbjct: 1 MKTLDIEAVQAFVLTADLKSFTRAAEALDTTQSAVSLKIKRLEDGLGRRLLERTPRQVRL 60 Query: 63 SAEGAAFLGAARNLVAAHQSAIGSFAVEHRRLVVGISHHIVGSELASLLKRMNTTDPGVV 122 SA+G AFL AR LVAAH A+G+F RRLV+G+SHH+VG++L LL+RM+ +P +V Sbjct: 61 SADGTAFLEPARELVAAHHGALGAFGTSQRRLVIGVSHHVVGADLPMLLRRMSEAEPALV 120 Query: 123 IQLHVDTSRSVLSAFDDGKLDAAIVLRHDAKRRDGDVLFEELFGWMAAPDFHHRPGEPLR 182 +++ V SR VL AFD G+LDAA+ L+HD++R DG+ + E FGWMAA DF + P +PLR Sbjct: 121 LEIRVAASRDVLDAFDRGRLDAAVALQHDSRRLDGETILSESFGWMAAADFEYHPPQPLR 180 Query: 183 LATQAEPCSVRAMAIEVLDAAGIAWTEAFVGGGLSTIGAALSAGLAVAALARRVAPADTV 242 LATQAEPCSVR MA++ LD AG+AWTE FVGGG++TIGAA+SAGLAVAAL RVAPA TV Sbjct: 181 LATQAEPCSVRRMAVDALDEAGVAWTEVFVGGGVATIGAAVSAGLAVAALGHRVAPAGTV 240 Query: 243 DLGPKLGLPPLPSRDVVLHSKLSDARTRQALRTLGAAF 280 D+G + GLPPLP+RDVVL+S L+DA RQALRTLGAA Sbjct: 241 DVGTRYGLPPLPARDVVLYSNLTDAHARQALRTLGAAL 278 >emb|CAQ36913.1| hypothetical protein RSMK03137 [Ralstonia solanacearum MolK2] Length = 338 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 180/279 (64%), Positives = 217/279 (77%) Query: 6 LDIEAVQAFVLVADLSSFTRAAQAMETTQSAISLKIRRLEDGLGRRLLERTPRLVRLSAE 65 LDIEAVQAFVL ADL SFTRAA+AM+TTQSA+SLKI+RLED LGRRLLERTPR+VRLS + Sbjct: 56 LDIEAVQAFVLTADLKSFTRAAEAMDTTQSAVSLKIKRLEDRLGRRLLERTPRVVRLSQD 115 Query: 66 GAAFLGAARNLVAAHQSAIGSFAVEHRRLVVGISHHIVGSELASLLKRMNTTDPGVVIQL 125 G AFL AAR L+AAHQ A+G+F + RRL VGISHHIVG+EL LL++M +P ++++ Sbjct: 116 GDAFLAAARELIAAHQGALGAFGTKPRRLSVGISHHIVGAELPWLLRQMVRAEPATLLEI 175 Query: 126 HVDTSRSVLSAFDDGKLDAAIVLRHDAKRRDGDVLFEELFGWMAAPDFHHRPGEPLRLAT 185 V +SR L AFD +LDAA+ LRHD +R DG+ + +E FGWMAAPDF H PGEPLRLAT Sbjct: 176 RVASSRETLDAFDRDELDAAVTLRHDTRRSDGETILDEAFGWMAAPDFTHHPGEPLRLAT 235 Query: 186 QAEPCSVRAMAIEVLDAAGIAWTEAFVGGGLSTIGAALSAGLAVAALARRVAPADTVDLG 245 QA PC VR MA+ L+ AG+ W E FVGGG+ TIGAA++AGLAVAAL+RR AP TVD+G Sbjct: 236 QAAPCRVREMAVTALEQAGVPWREVFVGGGVGTIGAAVAAGLAVAALSRRAAPPGTVDIG 295 Query: 246 PKLGLPPLPSRDVVLHSKLSDARTRQALRTLGAAFAANA 284 P+LGLPPLPSR ++LH+ D LRTL A A A Sbjct: 296 PRLGLPPLPSRGMILHTHRRDREATHTLRTLAATIRATA 334 >gb|AEG71974.1| hth-type transcriptional regulator ilvr (isoleucine biosynthesis transcriptional activator) [Ralstonia solanacearum Po82] Length = 362 Score = 341 bits (875), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 179/279 (64%), Positives = 216/279 (77%) Query: 6 LDIEAVQAFVLVADLSSFTRAAQAMETTQSAISLKIRRLEDGLGRRLLERTPRLVRLSAE 65 LDIEAVQAFVL ADL SFTRAA+AM+TTQSA+SLKI+RLED LGRRLLERTPR+VRLS + Sbjct: 80 LDIEAVQAFVLTADLKSFTRAAEAMDTTQSAVSLKIKRLEDRLGRRLLERTPRVVRLSQD 139 Query: 66 GAAFLGAARNLVAAHQSAIGSFAVEHRRLVVGISHHIVGSELASLLKRMNTTDPGVVIQL 125 G AFL AAR L+ AHQ A+G+F + RRL VGISHHIVG+EL LL++M +P ++++ Sbjct: 140 GDAFLAAARELITAHQGALGAFGTKPRRLSVGISHHIVGAELPWLLRQMVRAEPATLLEI 199 Query: 126 HVDTSRSVLSAFDDGKLDAAIVLRHDAKRRDGDVLFEELFGWMAAPDFHHRPGEPLRLAT 185 V +SR L AFD +LDAA+ LRHD +R DG+ + +E FGWMAAPDF H PGEPLRLAT Sbjct: 200 RVASSRETLDAFDRDELDAAVTLRHDTRRSDGETILDEAFGWMAAPDFTHHPGEPLRLAT 259 Query: 186 QAEPCSVRAMAIEVLDAAGIAWTEAFVGGGLSTIGAALSAGLAVAALARRVAPADTVDLG 245 QA PC VR MA+ L+ AG+ W E FVGGG+ TIGAA++AGLAVAAL+RR AP TVD+G Sbjct: 260 QAAPCRVREMAVTALEQAGVPWREVFVGGGVGTIGAAVAAGLAVAALSRRAAPPGTVDIG 319 Query: 246 PKLGLPPLPSRDVVLHSKLSDARTRQALRTLGAAFAANA 284 P+LGLPPLPSR ++LH+ D LRTL A A A Sbjct: 320 PRLGLPPLPSRGMILHTHRRDREATHTLRTLAATIRATA 358