BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0072.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004111206.1| glutamyl/glutaminyl-tRNA synthetase, class I... 436 e-120 ref|YP_783753.1| glutamyl-Q tRNA(Asp) synthetase [Rhodopseudomon... 435 e-120 ref|NP_950088.2| glutamyl-Q tRNA(Asp) synthetase [Rhodopseudomon... 427 e-117 emb|CAE30194.1| possible glutamyl-tRNA synthetase [Rhodopseudomo... 426 e-117 ref|YP_484436.1| glutamyl-Q tRNA(Asp) synthetase [Rhodopseudomon... 425 e-117 >ref|YP_004111206.1| glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain [Rhodopseudomonas palustris DX-1] gb|ADU46473.1| Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain [Rhodopseudomonas palustris DX-1] Length = 293 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 217/287 (75%), Positives = 239/287 (83%), Gaps = 6/287 (2%) Query: 4 PPVFRFAPSPNGYLHLGHAYSALLNHDLARQSGGRLLLRIEDIDATRCRPEFEQAIYEDL 63 PPVFRFAPSPNGYLHLGHAYSALLN DLAR SGG+LLLRIEDID TRCRP FEQAIYEDL Sbjct: 3 PPVFRFAPSPNGYLHLGHAYSALLNADLARASGGKLLLRIEDIDRTRCRPAFEQAIYEDL 62 Query: 64 AWLGIAWETPVRRQSEHFAAYGAAIDRLSARGLVYPSFESRTEIARLVAEREAGGAWPRD 123 +WLG+AW+ VRRQS+H A Y A++RLSA GL+YP+FESR EIARLVA +E WPRD Sbjct: 63 SWLGLAWDGEVRRQSDHLALYHGAVERLSALGLIYPAFESRAEIARLVAVKETAAPWPRD 122 Query: 124 PDGAPLYPGLAKSLSAEARDRLIGQGVPFALRLDMASARARAGELRWQDAGEGPAGESGD 183 PDGAPLYPGL K LSA R LI GVP+ALRLDM +A A AGEL WQ+ G GP GE+G Sbjct: 123 PDGAPLYPGLGKQLSATKRADLIAAGVPYALRLDMTAAIALAGELSWQELGSGPDGETGS 182 Query: 184 VAARPEAWGDVILARKETPTSYHLSVVIDDALQGVTDVVRGIDLFWSTSVHRLLQELLGL 243 +AARPEAWGDVI+ARKETPTSYHLSVVIDDALQG+T+VVRG DLFWSTSVHRLLQ LLGL Sbjct: 183 IAARPEAWGDVIIARKETPTSYHLSVVIDDALQGITEVVRGADLFWSTSVHRLLQHLLGL 242 Query: 244 PVPNYRHHRLIRDAAGQKLSKSTQATGLRE------XPADIRRLVGL 284 P P YRHH L+RDA G+KLSKST +TGLRE PADIR +VGL Sbjct: 243 PAPVYRHHALLRDAEGRKLSKSTGSTGLRELRAAEVSPADIRTMVGL 289 >ref|YP_783753.1| glutamyl-Q tRNA(Asp) synthetase [Rhodopseudomonas palustris BisA53] gb|ABJ08773.1| glutamyl-tRNA synthetase, class Ic [Rhodopseudomonas palustris BisA53] Length = 293 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 221/290 (76%), Positives = 243/290 (83%), Gaps = 7/290 (2%) Query: 3 MP-PVFRFAPSPNGYLHLGHAYSALLNHDLARQSGGRLLLRIEDIDATRCRPEFEQAIYE 61 MP PVFRFAPSPNG+LHLGHAYSAL+N DLAR SGGRLLLRIEDID TRCRPEFE+AI + Sbjct: 1 MPRPVFRFAPSPNGFLHLGHAYSALVNFDLARDSGGRLLLRIEDIDGTRCRPEFEKAICD 60 Query: 62 DLAWLGIAWETPVRRQSEHFAAYGAAIDRLSARGLVYPSFESRTEIARLVAEREAGGAWP 121 DLAWLGI WE PVRRQSEHF Y A +RL+A GL+YP+FESR EIA+LVA REA WP Sbjct: 61 DLAWLGIEWEEPVRRQSEHFEIYRQAAERLAAEGLLYPAFESRAEIAKLVAAREAQAPWP 120 Query: 122 RDPDGAPLYPGLAKSLSAEARDRLIGQGVPFALRLDMASARARAGELRWQDAGEGPAGES 181 RDPDGAPLYPG A+SLS +AR + I G+P+ALRLD A+A+AR GEL WQ+ GEGP GE Sbjct: 121 RDPDGAPLYPGDARSLSPDARAQCIASGIPYALRLDTAAAQARVGELTWQEQGEGPNGER 180 Query: 182 GDVAARPEAWGDVILARKETPTSYHLSVVIDDALQGVTDVVRGIDLFWSTSVHRLLQELL 241 G V ARPEAWGDVILARKETPTSYHLSVVIDDALQGVTDVVRG DLFWSTSVHRLLQ+LL Sbjct: 181 GTVTARPEAWGDVILARKETPTSYHLSVVIDDALQGVTDVVRGGDLFWSTSVHRLLQQLL 240 Query: 242 GLPVPNYRHHRLIRDAAGQKLSKSTQATGLRE------XPADIRRLVGLP 285 GLP P YRHHRL+RD AG+KLSKSTQAT L E PA IR+ +GLP Sbjct: 241 GLPAPRYRHHRLLRDDAGRKLSKSTQATSLVELRGNGVTPAAIRQRLGLP 290 >ref|NP_950088.2| glutamyl-Q tRNA(Asp) synthetase [Rhodopseudomonas palustris CGA009] Length = 293 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 213/287 (74%), Positives = 237/287 (82%), Gaps = 6/287 (2%) Query: 4 PPVFRFAPSPNGYLHLGHAYSALLNHDLARQSGGRLLLRIEDIDATRCRPEFEQAIYEDL 63 PPVFRFAPSPNGYLHLGHAYSALLN DLAR SGGRLLLRIEDID TRCRP+FEQAIYEDL Sbjct: 3 PPVFRFAPSPNGYLHLGHAYSALLNADLARASGGRLLLRIEDIDRTRCRPQFEQAIYEDL 62 Query: 64 AWLGIAWETPVRRQSEHFAAYGAAIDRLSARGLVYPSFESRTEIARLVAEREAGGAWPRD 123 WLG+AW+ VRRQS+H Y A+ +L+ARGL+YP+FESR EIARLVAE+E WPRD Sbjct: 63 FWLGVAWDGEVRRQSDHLELYRDAVTQLAARGLIYPAFESRAEIARLVAEKETVAPWPRD 122 Query: 124 PDGAPLYPGLAKSLSAEARDRLIGQGVPFALRLDMASARARAGELRWQDAGEGPAGESGD 183 PDGAP YPG+ K LSA R LI GVP+ALRLDM +A AGEL WQ+ G GPAGE+G Sbjct: 123 PDGAPHYPGIGKQLSAAQRAELIAAGVPYALRLDMTAAVELAGELNWQELGCGPAGEAGT 182 Query: 184 VAARPEAWGDVILARKETPTSYHLSVVIDDALQGVTDVVRGIDLFWSTSVHRLLQELLGL 243 + ARPEAWGDVI+ARKETPTSYHLSVVIDDALQGVT+VVRG DLFWSTSVHRLLQ LLGL Sbjct: 183 IMARPEAWGDVIIARKETPTSYHLSVVIDDALQGVTEVVRGADLFWSTSVHRLLQHLLGL 242 Query: 244 PVPNYRHHRLIRDAAGQKLSKSTQATGLRE------XPADIRRLVGL 284 P P YRHH L+RDA G+KLSKST +TGLR+ PA+IR +VGL Sbjct: 243 PAPVYRHHALLRDAEGRKLSKSTGSTGLRKLRAAGVTPAEIRTMVGL 289 >emb|CAE30194.1| possible glutamyl-tRNA synthetase [Rhodopseudomonas palustris CGA009] Length = 307 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 213/287 (74%), Positives = 237/287 (82%), Gaps = 6/287 (2%) Query: 4 PPVFRFAPSPNGYLHLGHAYSALLNHDLARQSGGRLLLRIEDIDATRCRPEFEQAIYEDL 63 PPVFRFAPSPNGYLHLGHAYSALLN DLAR SGGRLLLRIEDID TRCRP+FEQAIYEDL Sbjct: 17 PPVFRFAPSPNGYLHLGHAYSALLNADLARASGGRLLLRIEDIDRTRCRPQFEQAIYEDL 76 Query: 64 AWLGIAWETPVRRQSEHFAAYGAAIDRLSARGLVYPSFESRTEIARLVAEREAGGAWPRD 123 WLG+AW+ VRRQS+H Y A+ +L+ARGL+YP+FESR EIARLVAE+E WPRD Sbjct: 77 FWLGVAWDGEVRRQSDHLELYRDAVTQLAARGLIYPAFESRAEIARLVAEKETVAPWPRD 136 Query: 124 PDGAPLYPGLAKSLSAEARDRLIGQGVPFALRLDMASARARAGELRWQDAGEGPAGESGD 183 PDGAP YPG+ K LSA R LI GVP+ALRLDM +A AGEL WQ+ G GPAGE+G Sbjct: 137 PDGAPHYPGIGKQLSAAQRAELIAAGVPYALRLDMTAAVELAGELNWQELGCGPAGEAGT 196 Query: 184 VAARPEAWGDVILARKETPTSYHLSVVIDDALQGVTDVVRGIDLFWSTSVHRLLQELLGL 243 + ARPEAWGDVI+ARKETPTSYHLSVVIDDALQGVT+VVRG DLFWSTSVHRLLQ LLGL Sbjct: 197 IMARPEAWGDVIIARKETPTSYHLSVVIDDALQGVTEVVRGADLFWSTSVHRLLQHLLGL 256 Query: 244 PVPNYRHHRLIRDAAGQKLSKSTQATGLRE------XPADIRRLVGL 284 P P YRHH L+RDA G+KLSKST +TGLR+ PA+IR +VGL Sbjct: 257 PAPVYRHHALLRDAEGRKLSKSTGSTGLRKLRAAGVTPAEIRTMVGL 303 >ref|YP_484436.1| glutamyl-Q tRNA(Asp) synthetase [Rhodopseudomonas palustris HaA2] gb|ABD05525.1| Glutamyl-tRNA synthetase, class Ic [Rhodopseudomonas palustris HaA2] Length = 293 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 216/287 (75%), Positives = 240/287 (83%), Gaps = 6/287 (2%) Query: 4 PPVFRFAPSPNGYLHLGHAYSALLNHDLARQSGGRLLLRIEDIDATRCRPEFEQAIYEDL 63 PPVFRFAPSPNG+LHLGHAYSALLN DLAR SGGRLLLRIEDIDATRCRPE+E AI +DL Sbjct: 3 PPVFRFAPSPNGFLHLGHAYSALLNFDLARASGGRLLLRIEDIDATRCRPEYEAAIVDDL 62 Query: 64 AWLGIAWETPVRRQSEHFAAYGAAIDRLSARGLVYPSFESRTEIARLVAEREAGGAWPRD 123 AWLGIAWE VRRQS+H Y A++RL+ARGLVYP+FESR EIARLVA +E WPRD Sbjct: 63 AWLGIAWEPEVRRQSDHLDLYRDAVERLAARGLVYPAFESRAEIARLVAAKETTAPWPRD 122 Query: 124 PDGAPLYPGLAKSLSAEARDRLIGQGVPFALRLDMASARARAGELRWQDAGEGPAGESGD 183 PDGAPLYPG AK LSAE R +LIG G P+ALRLDM +ARA AGEL W++ GP GE+G Sbjct: 123 PDGAPLYPGSAKLLSAEQRAQLIGSGAPYALRLDMEAARALAGELFWRELSLGPDGEAGM 182 Query: 184 VAARPEAWGDVILARKETPTSYHLSVVIDDALQGVTDVVRGIDLFWSTSVHRLLQELLGL 243 VAARPEAWGDV++ARKETPTSYHL+VVIDDALQGVT+VVRG DLFWSTSVHRLLQ LL L Sbjct: 183 VAARPEAWGDVVIARKETPTSYHLAVVIDDALQGVTEVVRGADLFWSTSVHRLLQTLLDL 242 Query: 244 PVPNYRHHRLIRDAAGQKLSKSTQATGLRE------XPADIRRLVGL 284 P P YRHH L+RDA G+KLSKST ATGLRE P++IR +VGL Sbjct: 243 PAPVYRHHPLLRDAEGRKLSKSTGATGLRELRAAGGTPSEIRAMVGL 289