BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0069.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08627675.1| transcriptional regulator, LysR family [Brady... 406 e-111 ref|YP_001412105.1| LysR family transcriptional regulator [Parvi... 286 2e-75 ref|YP_624150.1| LysR family transcriptional regulator [Burkhold... 160 2e-37 ref|YP_001777091.1| LysR family transcriptional regulator [Burkh... 160 2e-37 ref|YP_001413744.1| LysR family transcriptional regulator [Parvi... 159 4e-37 >ref|ZP_08627675.1| transcriptional regulator, LysR family [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09579.1| transcriptional regulator, LysR family [Bradyrhizobiaceae bacterium SG-6C] Length = 302 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 192/295 (65%), Positives = 235/295 (79%) Query: 1 MDWELCKTFVAVAETRSLAGAARRLRISHPTVGRNVAALEQQLGTRLFARSNDGLSLTSH 60 MDW+LC+TF+AVAE+ S AARRLR SHPTV R++AALE QLGT+LF RSN+GL+LT+ Sbjct: 4 MDWDLCRTFLAVAESGSYLAAARRLRSSHPTVSRDIAALEAQLGTKLFVRSNEGLTLTAQ 63 Query: 61 GRKFREHAEAMAAAALRAEAAASATGEQARGVVKLSIGATLAAHWLMPRLGPFLRDHANI 120 GR+FREH AM AAALRAE A SA G +ARG+VK SIG TLAA+WLMP + F+ +H ++ Sbjct: 64 GRRFREHTTAMEAAALRAETAVSAKGTKARGLVKFSIGPTLAAYWLMPHMASFIAEHPDV 123 Query: 121 QLEIITHPFPASVRRREADVVLRPVDAGEENLIGRKIGRLGTGFYASRDYAAGRKLPERR 180 Q+E +THPFP SVR+READ+VLR +G+ENL+GRKI RLG GFYASRDYAA LP R Sbjct: 124 QIEFVTHPFPVSVRKREADIVLRIYQSGDENLVGRKIARLGVGFYASRDYAARHPLPASR 183 Query: 181 DEWRGHHVIGFADQASNAHLARWSDVITRQGTLVMRCSSQGDMLAAARAGLGICALSCLV 240 D+W+ H VIGFAD+ASNA L RWSD + RQ ++ MRCSSQ DMLAA RAG+GICA+SC+V Sbjct: 184 DDWKHHSVIGFADRASNAELGRWSDHVARQASVAMRCSSQADMLAAVRAGVGICAMSCIV 243 Query: 241 GADYPDLVRVAPQKLSSLSDLWLLAHPDLVALPAVRAVIGFVTDCAREDRVRLRG 295 + DL+RV+P KL+ +SD+WLLAHPDL+ LP VRAVI FVT +R DR L G Sbjct: 244 ADAHDDLIRVSPHKLAGISDIWLLAHPDLIDLPPVRAVINFVTQRSRIDREILSG 298 >ref|YP_001412105.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gb|ABS62448.1| transcriptional regulator, LysR family [Parvibaculum lavamentivorans DS-1] Length = 303 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 140/294 (47%), Positives = 200/294 (68%) Query: 2 DWELCKTFVAVAETRSLAGAARRLRISHPTVGRNVAALEQQLGTRLFARSNDGLSLTSHG 61 +W+ + F+AV +T+SL+GA RRL++SH TVGR++A LE++LGT+LF R G +LT G Sbjct: 6 NWDAYRIFLAVVDTQSLSGAGRRLKLSHATVGRHIATLEKRLGTKLFVREPTGYALTGAG 65 Query: 62 RKFREHAEAMAAAALRAEAAASATGEQARGVVKLSIGATLAAHWLMPRLGPFLRDHANIQ 121 + R E M+ AA RA AAS+ QA+G+V+++I ++A++W MP L F H I+ Sbjct: 66 ERLRAEVEPMSLAAERALHAASSEDGQAQGLVRVAIPHSIASYWFMPYLDEFAARHPGIE 125 Query: 122 LEIITHPFPASVRRREADVVLRPVDAGEENLIGRKIGRLGTGFYASRDYAAGRKLPERRD 181 +EI+ SV+RR+AD+V+RP G EN++GRKIGR+G GFYASR YA LP +R+ Sbjct: 126 IEIVNEVTQVSVKRRDADIVIRPYGPGRENVVGRKIGRIGVGFYASRSYAERFGLPSKRE 185 Query: 182 EWRGHHVIGFADQASNAHLARWSDVITRQGTLVMRCSSQGDMLAAARAGLGICALSCLVG 241 EW+ H +IGF +A+ LA W +T+ + +RC S D++ A RAG+GI L CL G Sbjct: 186 EWKEHRIIGFGGRAAEVELADWLAHVTQGARVALRCFSDADLVQAVRAGVGISTLVCLTG 245 Query: 242 ADYPDLVRVAPQKLSSLSDLWLLAHPDLVALPAVRAVIGFVTDCAREDRVRLRG 295 Y DL+R+APQKL++ +++WLLAHPDL VRAVI F+ + A+ DR RL G Sbjct: 246 DHYDDLIRIAPQKLANGTEMWLLAHPDLRDTAPVRAVIDFLGEKAKVDRDRLAG 299 >ref|YP_624150.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] ref|YP_837704.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gb|ABF79177.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gb|ABK10811.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 297 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 148/284 (52%), Gaps = 1/284 (0%) Query: 1 MDWELCKTFVAVAETRSLAGAARRLRISHPTVGRNVAALEQQLGTRLFARSNDGLSLTSH 60 M+W+ + F+A+A T +L GAA +L + TVGR +AALE +L RLF R+ LT+ Sbjct: 7 MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPSLYVLTTA 66 Query: 61 GRKFREHAEAMAAAALRAEAAASATGEQARGVVKLSIGATLAAHWLMPRLGPFLRDHANI 120 G E AE M A+L E EQ G V+++ TL +++P + R HA I Sbjct: 67 GEALLEPAETMERASLTIERRVMGLDEQLAGSVRIATTDTLGKRFVVPAIANLRRRHAGI 126 Query: 121 QLEIITHPFPASVRRREADVVLRPVDAGEENLIGRKIGRLGTGFYASRDYAAGRKLPERR 180 + +T ++ RREAD+ +R + +LI R++G L TG YASR Y A R P Sbjct: 127 DVVCVTSAQITNLTRREADLAIRTLRPESPDLIVRRLGHLETGIYASRRYLAERGEPVAG 186 Query: 181 DEWRGHHVIGFADQASNAHLARWSDVITRQGTLVMRCSSQGDMLAAARAGLGICALSCLV 240 + GH ++ + T +G ++ + SS ++ AA AGLGI L C Sbjct: 187 SAFDGHDLVMYQQPVVPTMWDALCGEPTSRGRVMFQTSSTMMLVEAALAGLGIAELPCFR 246 Query: 241 GADYPDLVRVAPQKLSSLSDLWLLAHPDLVALPAVRAVIGFVTD 284 PDLVR+ PQ+ + D+WL+AH DL V+AVI V D Sbjct: 247 ADTEPDLVRLMPQRCNHF-DVWLVAHADLYKTARVQAVIEAVVD 289 >ref|YP_001777091.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ACA92601.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 291 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 148/284 (52%), Gaps = 1/284 (0%) Query: 1 MDWELCKTFVAVAETRSLAGAARRLRISHPTVGRNVAALEQQLGTRLFARSNDGLSLTSH 60 M+W+ + F+A+A T +L GAA +L + TVGR +AALE +L RLF R+ LT+ Sbjct: 1 MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPSLYVLTTA 60 Query: 61 GRKFREHAEAMAAAALRAEAAASATGEQARGVVKLSIGATLAAHWLMPRLGPFLRDHANI 120 G E AE M A+L E EQ G V+++ TL +++P + R HA I Sbjct: 61 GEALLEPAETMERASLTIERRVMGLDEQLAGSVRIATTDTLGKRFVVPAIANLRRRHAGI 120 Query: 121 QLEIITHPFPASVRRREADVVLRPVDAGEENLIGRKIGRLGTGFYASRDYAAGRKLPERR 180 + +T ++ RREAD+ +R + +LI R++G L TG YASR Y A R P Sbjct: 121 DVVCVTSAQITNLTRREADLAIRTLRPESPDLIVRRLGHLETGIYASRRYLAERGEPVAG 180 Query: 181 DEWRGHHVIGFADQASNAHLARWSDVITRQGTLVMRCSSQGDMLAAARAGLGICALSCLV 240 + GH ++ + T +G ++ + SS ++ AA AGLGI L C Sbjct: 181 SAFDGHDLVMYQQPVVPTMWDALCGEPTSRGRVMFQTSSTMMLVEAALAGLGIAELPCFR 240 Query: 241 GADYPDLVRVAPQKLSSLSDLWLLAHPDLVALPAVRAVIGFVTD 284 PDLVR+ PQ+ + D+WL+AH DL V+AVI V D Sbjct: 241 ADTEPDLVRLMPQRCNHF-DVWLVAHADLYKTARVQAVIEAVVD 283 >ref|YP_001413744.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gb|ABS64087.1| transcriptional regulator, LysR family [Parvibaculum lavamentivorans DS-1] Length = 319 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 110/304 (36%), Positives = 152/304 (50%), Gaps = 10/304 (3%) Query: 1 MDWELCKTFVAVAETRSLAGAARRLRISHPTVGRNVAALEQQLGTRLFARSNDGLSLTSH 60 M+W + F+AVA SL+GA ++L ++ TV R VA+LE LG RLF R G LT+ Sbjct: 1 MNWNDLRFFLAVAAAGSLSGAGQQLGVNTTTVLRRVASLEDDLGARLFERERTGYRLTAA 60 Query: 61 GRKFREHAEAMAAAALRAEAAASATGEQARGVVKLSIGATLAAHWLMPRLGPFLRDHANI 120 G K E E + +A GE A G V+L+ G +A+ L P L F RDH + Sbjct: 61 GEKLVEALEPVDRRLSALPRDFAAAGEGAEGTVRLAAGEVVASSLLAPELAAFRRDHPGL 120 Query: 121 QLEIITHPFPASV--------RRREADVVLRPVDAGEENLIGRKIGRLGTGFYASRDYAA 172 +LEI+T P ASV ++ DV LR + +++ RK+G + G YA+ Y Sbjct: 121 ELEILTDPRLASVGPAPRIGNPLKDVDVALRLARPTQGDMLMRKVGDMAYGLYATPTYLD 180 Query: 173 GRKLPERRDEWRGHHVIGFADQASNAHLARWSDVITRQGTLVMRCSSQGDMLAAARAGLG 232 P GH +IGF + W + + +R SS AAR GLG Sbjct: 181 KHGRPSGMAAIAGHDLIGFPKSETPLGPVWWFSRAEKSARVALRSSSVLARAEAARQGLG 240 Query: 233 ICALSCLVGADYPDLVRV-APQKLSSLSDLWLLAHPDLVALPAVRAVIGFVTDCAREDRV 291 + AL C++G DL RV P + SL ++WL+A DL L VRAV+ FV D + R Sbjct: 241 LAALPCILGDADADLERVFGPDDIGSL-EMWLMARNDLAQLAHVRAVMEFVVDAVKRHRA 299 Query: 292 RLRG 295 RL G Sbjct: 300 RLEG 303