BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0065.p (361 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768010.1| hypothetical protein bll1370 [Bradyrhizobium ja... 555 e-156 ref|YP_001208327.1| hypothetical protein BRADO6500 [Bradyrhizobi... 525 e-147 ref|YP_001237288.1| hypothetical protein BBta_1133 [Bradyrhizobi... 508 e-142 ref|ZP_08628476.1| hypothetical protein CSIRO_1552 [Bradyrhizobi... 443 e-122 ref|YP_001412405.1| hypothetical protein Plav_1127 [Parvibaculum... 308 1e-81 >ref|NP_768010.1| hypothetical protein bll1370 [Bradyrhizobium japonicum USDA 110] dbj|BAC46635.1| bll1370 [Bradyrhizobium japonicum USDA 110] Length = 361 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 266/359 (74%), Positives = 303/359 (84%) Query: 1 MNSTDFIVIRNDLQQCKVIETPLPDAAALPADALLVKVTRFAFTANNITYAVIGEQLKYW 60 M STDF+V RNDL+QCK+IET +PDAAALP DALLVKV RFA TANNITYAV+G++LKYW Sbjct: 1 MTSTDFVVARNDLEQCKLIETAIPDAAALPQDALLVKVERFALTANNITYAVMGDELKYW 60 Query: 61 HLFPAPEGYGIIPVWGFGEVLASKHPMIAEGETLFGYFPMATHLVIEAADVSKRGLRDGA 120 +FPAP+G+G IPVWGFGEV+ASKHP +A GE LFGYFPMATHLVIEA DVSKRGLRDGA Sbjct: 61 QIFPAPQGFGNIPVWGFGEVIASKHPGVAAGEQLFGYFPMATHLVIEATDVSKRGLRDGA 120 Query: 121 AHRQEVSPVYNAYARVSGDSTYAGQQGDFRALLLPLFMLSFLVDDFLAENEFYGARRVIL 180 AHRQ V+PVYN Y+RV+GD YAG+QGD++ALL PLFMLSFLVDDFLAEN+ +GAR V+L Sbjct: 121 AHRQGVAPVYNLYSRVTGDPAYAGRQGDYQALLRPLFMLSFLVDDFLAENDDFGARTVLL 180 Query: 181 SSASSKTAFGLAHLAHKRGISVIGLTSRGNVDFVRSLGCYDEVVTYDQVTAIPPAEPTAY 240 SSASSKTAFGLAHL H RG VIGLTS GN FV SLGCYDEVVTYD+VT++P P A+ Sbjct: 181 SSASSKTAFGLAHLLHTRGRKVIGLTSAGNTGFVTSLGCYDEVVTYDRVTSLPSNAPVAF 240 Query: 241 VDMAGNSALREALHRHFGAQMVYSGRVGLTHRASEPEEPTLPGAKPVWFFAPDQIRKRAK 300 VDMAG+SALR LHRHFG QM S RVGLTHRA+E +E LPGAKP WFFAPD IRKRAK Sbjct: 241 VDMAGSSALRAELHRHFGDQMKCSVRVGLTHRATEADEGALPGAKPRWFFAPDHIRKRAK 300 Query: 301 EWGPGGIDQRFGAAWAELVPHLPNWLDVVERRGPAAVREAYLDTLQGRVPPDQGLILSL 359 +WGPGGI+QRFGAAW+ P L L V+E RGP AV+ YL TL+GR+PP+QG +LSL Sbjct: 301 DWGPGGIEQRFGAAWSGFAPLLEKCLRVIESRGPEAVQRIYLGTLKGRIPPEQGHMLSL 359 >ref|YP_001208327.1| hypothetical protein BRADO6500 [Bradyrhizobium sp. ORS 278] emb|CAL80112.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 375 Score = 525 bits (1351), Expect = e-147, Method: Compositional matrix adjust. Identities = 252/362 (69%), Positives = 290/362 (80%), Gaps = 2/362 (0%) Query: 1 MNSTDFIVIRNDLQQCKVIETPLPDAAALPADALLVKVTRFAFTANNITYAVIGEQLKYW 60 M STDFIV RN LQ C+ I T LPD ALP DALLVKV RFAFTANNITYA++GEQLKYW Sbjct: 13 MQSTDFIVARNALQTCRTIITELPDHDALPTDALLVKVDRFAFTANNITYALLGEQLKYW 72 Query: 61 HLFPAPEGYGIIPVWGFGEVLASKHPMIAEGETLFGYFPMATHLVIEAADVSKRGLRDGA 120 LFPAP+G+GIIPVWGFG+V+AS++P + EGE LFGYFPMATHLVIEAADV KRGLRD A Sbjct: 73 QLFPAPDGFGIIPVWGFGDVIASRNPAVTEGERLFGYFPMATHLVIEAADVGKRGLRDAA 132 Query: 121 AHRQEVSPVYNAYARVSGDSTYAGQQGDFRALLLPLFMLSFLVDDFLAENEFYGARRVIL 180 AHRQ V+PVYNAYAR+ GD+ +AG+QGD++ALL PLFMLSFLVDDFLAE +GA VIL Sbjct: 133 AHRQGVAPVYNAYARIGGDAAFAGRQGDYQALLRPLFMLSFLVDDFLAEQAHFGASTVIL 192 Query: 181 SSASSKTAFGLAHLAH--KRGISVIGLTSRGNVDFVRSLGCYDEVVTYDQVTAIPPAEPT 238 SSASSKTAFGLAHL H +RGI V+GLTS N FVR+LGCYDEVVTYD + + A Sbjct: 193 SSASSKTAFGLAHLLHTQRRGIRVVGLTSPSNTAFVRALGCYDEVVTYDAIDTLDAAAGV 252 Query: 239 AYVDMAGNSALREALHRHFGAQMVYSGRVGLTHRASEPEEPTLPGAKPVWFFAPDQIRKR 298 A+VDMAGN+ LR ALH HFG +VYSGRVGLTH+ + LPGA+P WFFAPDQIRKR Sbjct: 253 AFVDMAGNAGLRAALHHHFGEHLVYSGRVGLTHQDGSDDAAPLPGAQPTWFFAPDQIRKR 312 Query: 299 AKEWGPGGIDQRFGAAWAELVPHLPNWLDVVERRGPAAVREAYLDTLQGRVPPDQGLILS 358 AKEWGPGG++ R G AW + P L WL + + RGP AV+ YLDTL GRVPP+QG +LS Sbjct: 313 AKEWGPGGLETRLGTAWRDFAPRLDGWLTITDGRGPKAVQRVYLDTLLGRVPPNQGHMLS 372 Query: 359 LA 360 +A Sbjct: 373 MA 374 >ref|YP_001237288.1| hypothetical protein BBta_1133 [Bradyrhizobium sp. BTAi1] gb|ABQ33382.1| hypothetical protein BBta_1133 [Bradyrhizobium sp. BTAi1] Length = 363 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 245/363 (67%), Positives = 284/363 (78%), Gaps = 2/363 (0%) Query: 1 MNSTDFIVIRNDLQQCKVIETPLPDAAALPADALLVKVTRFAFTANNITYAVIGEQLKYW 60 M S DFIV R DL+ C+ I T PD ALP+DALLVKV RFAFTANNITYA++GEQLKYW Sbjct: 1 MQSNDFIVARQDLETCRTISTERPDRDALPSDALLVKVDRFAFTANNITYALLGEQLKYW 60 Query: 61 HLFPAPEGYGIIPVWGFGEVLASKHPMIAEGETLFGYFPMATHLVIEAADVSKRGLRDGA 120 LFPAP+G+GIIPVWGFG+V+AS++P +AEGE LFGYFPMATHL IEAAD+SKR LRD A Sbjct: 61 QLFPAPDGFGIIPVWGFGDVIASRNPAVAEGERLFGYFPMATHLCIEAADISKRSLRDAA 120 Query: 121 AHRQEVSPVYNAYARVSGDSTYAGQQGDFRALLLPLFMLSFLVDDFLAENEFYGARRVIL 180 AHRQ V+PVYN YARV GD+ +AG+QGD +ALL PLFMLSFLVDDFLAE +GA VIL Sbjct: 121 AHRQGVAPVYNVYARVGGDAAFAGRQGDHQALLRPLFMLSFLVDDFLAEQMHFGATTVIL 180 Query: 181 SSASSKTAFGLAHLAH--KRGISVIGLTSRGNVDFVRSLGCYDEVVTYDQVTAIPPAEPT 238 SSASSKTAFGLAHL H +RGI VIGLTS N FV SLGCYDEVVTYD V + Sbjct: 181 SSASSKTAFGLAHLLHTQRRGIRVIGLTSPSNAAFVCSLGCYDEVVTYDAVDTLDATTRA 240 Query: 239 AYVDMAGNSALREALHRHFGAQMVYSGRVGLTHRASEPEEPTLPGAKPVWFFAPDQIRKR 298 A+VDMAG++ LR ALHRH+G +VYSGRVGLTH+ + LPGA+P WFFAPDQIRKR Sbjct: 241 AFVDMAGHAGLRAALHRHYGDNLVYSGRVGLTHQDGSDDATPLPGARPSWFFAPDQIRKR 300 Query: 299 AKEWGPGGIDQRFGAAWAELVPHLPNWLDVVERRGPAAVREAYLDTLQGRVPPDQGLILS 358 AK WGPGG++ R AAW + P L WL + + RGP AVR YLDTL GRVPP + +L+ Sbjct: 301 AKAWGPGGVETRLRAAWRDFAPRLDGWLTITDARGPEAVRRVYLDTLNGRVPPHEAHMLT 360 Query: 359 LAE 361 +A+ Sbjct: 361 MAD 363 >ref|ZP_08628476.1| hypothetical protein CSIRO_1552 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08800.1| hypothetical protein CSIRO_1552 [Bradyrhizobiaceae bacterium SG-6C] Length = 346 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 213/303 (70%), Positives = 248/303 (81%), Gaps = 3/303 (0%) Query: 2 NSTDFIVIRNDLQQCKVIETPLPDAAALPADALLVKVTRFAFTANNITYAVIGEQLKYWH 61 +ST F+V RNDL C+V+E P+P LP D LLVKV RFAFTANNITYA++GEQLKYWH Sbjct: 3 SSTQFVVGRNDLGTCRVMEVPMPGITQLPEDGLLVKVDRFAFTANNITYAMLGEQLKYWH 62 Query: 62 LFPAPEGYGIIPVWGFGEVLASKHPMIAEGETLFGYFPMATHLVIEAADVSKRGLRDGAA 121 LFPAPEG+G IPVWGFG V+ S+HP I GE +FGY PMATHLVIEAADV K G RD AA Sbjct: 63 LFPAPEGFGNIPVWGFGRVIESRHPDIPSGEVIFGYLPMATHLVIEAADVKKGGFRDAAA 122 Query: 122 HRQEVSPVYNAYARVSGDSTYAGQQGDFRALLLPLFMLSFLVDDFLAENEFYGARRVILS 181 HRQ VSPVYNAYARV+GD + G+QGD++ALL PLFMLSFLVDDFLA+ +F+GA+ VILS Sbjct: 123 HRQGVSPVYNAYARVTGDPAFEGRQGDYQALLRPLFMLSFLVDDFLADKDFFGAQSVILS 182 Query: 182 SASSKTAFGLAHL--AHKRGISVIGLTSRGNVDFVRSLGCYDEVVTYDQVTAIPPAEPTA 239 SASSKTAFGLA L H++ + VIGLTS N DFV SLGCYDEVVTYDQ+ A+ P + A Sbjct: 183 SASSKTAFGLAWLLHTHRKPVRVIGLTSASNKDFVTSLGCYDEVVTYDQIEAM-PQQAVA 241 Query: 240 YVDMAGNSALREALHRHFGAQMVYSGRVGLTHRASEPEEPTLPGAKPVWFFAPDQIRKRA 299 +VDMAGN LR LH+HFG ++VYSGRVGLTH+ + P++ +LPGAKP WFFAPDQIRKRA Sbjct: 242 FVDMAGNPDLRTRLHKHFGDRLVYSGRVGLTHQDAAPDDESLPGAKPTWFFAPDQIRKRA 301 Query: 300 KEW 302 KEW Sbjct: 302 KEW 304 >ref|YP_001412405.1| hypothetical protein Plav_1127 [Parvibaculum lavamentivorans DS-1] gb|ABS62748.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1] Length = 357 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 157/358 (43%), Positives = 215/358 (60%), Gaps = 10/358 (2%) Query: 5 DFIVIRNDLQQCKVIETPLPDAAALPADALLVKVTRFAFTANNITYAVIGEQLKYWHLFP 64 +FIV RNDL Q K +E A + +L ++ +FAFTANNITYAV G+ L YW FP Sbjct: 7 EFIVNRNDLAQSKWVER----EAEVEDGQILAEIEKFAFTANNITYAVAGDMLNYWSFFP 62 Query: 65 APEGYGIIPVWGFGEVLASKHPMIAEGETLFGYFPMATHLVIEAADVSKRGLRDGAAHRQ 124 A G+G IPVWGF V+ SK+ +A GE L+GYFPMATHLV++ V+ D R+ Sbjct: 63 AEGGWGKIPVWGFANVVQSKNKDVAVGERLYGYFPMATHLVMQPEKVTPGSFLDLYKSRR 122 Query: 125 EVSPVYNAYARVSGDSTYAGQQGDFRALLLPLFMLSFLVDDFLAENEFYGARRVILSSAS 184 E+ PVYN+Y R + + D + +L PL+ SFL+DD+LA+N F+GA++ ++ SAS Sbjct: 123 ELHPVYNSYTRSNAQTV---PHDDLQPILRPLYTTSFLIDDWLADNGFFGAKQALVLSAS 179 Query: 185 SKTAFGLAHLAHKR---GISVIGLTSRGNVDFVRSLGCYDEVVTYDQVTAIPPAEPTAYV 241 SKT GLA H+R IG+TSRGN+ FV LG YD + YD + ++ + PT V Sbjct: 180 SKTGLGLAFGLHRRRPDAPKTIGITSRGNIGFVNGLGFYDRTIAYDDIASLDASMPTLVV 239 Query: 242 DMAGNSALREALHRHFGAQMVYSGRVGLTHRASEPEEPTLPGAKPVWFFAPDQIRKRAKE 301 D AGN + A+H HFG ++V S +VGL+H + LPGA P +FFAPDQ+RKR + Sbjct: 240 DFAGNGEVLAAVHNHFGDKLVESTQVGLSHWDAGRPPSGLPGATPRFFFAPDQVRKRTND 299 Query: 302 WGPGGIDQRFGAAWAELVPHLPNWLDVVERRGPAAVREAYLDTLQGRVPPDQGLILSL 359 WG G D + +W H WL V +G A+ Y + GR+ P +G IL+ Sbjct: 300 WGKEGFDTKLDESWNAFAEHADKWLTVEHGKGEEAIAHIYAEMRAGRINPAEGHILTF 357