BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0063.p (223 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768008.1| hypothetical protein bll1368 [Bradyrhizobium ja... 379 e-103 ref|YP_001208328.1| hypothetical protein BRADO6501 [Bradyrhizobi... 358 3e-97 ref|YP_001237287.1| hypothetical protein BBta_1132 [Bradyrhizobi... 356 1e-96 ref|NP_770284.1| hypothetical protein blr3644 [Bradyrhizobium ja... 277 7e-73 ref|ZP_06840739.1| Peptidylamidoglycolate lyase [Burkholderia sp... 266 1e-69 >ref|NP_768008.1| hypothetical protein bll1368 [Bradyrhizobium japonicum USDA 110] dbj|BAC46633.1| bll1368 [Bradyrhizobium japonicum USDA 110] Length = 342 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 177/213 (83%), Positives = 193/213 (90%), Gaps = 1/213 (0%) Query: 11 QPTAGXGGEPFHRCTHTALSPKGEIYVSDGYGNACIHKYTPDGRLIKSWGEPGTDPGQFN 70 +P GEPFHRCTHTALSPKGEIYVSDGYGNA +HK+TPDG+LIKSWGEPGTDPGQFN Sbjct: 129 KPAPFMSGEPFHRCTHTALSPKGEIYVSDGYGNARVHKFTPDGKLIKSWGEPGTDPGQFN 188 Query: 71 IVHNIATDADGWVYVADRENHRVQVFDGNGRYETQWNNLHRPCALCCCGGGKQPNFVIGE 130 IVHNIATD+DGWVYVADRENHRVQVF+G G+YETQWNNLHRPCALCCC GG+ P FVIGE Sbjct: 189 IVHNIATDSDGWVYVADRENHRVQVFNGEGKYETQWNNLHRPCALCCC-GGRSPTFVIGE 247 Query: 131 LGPGMAVNRKVPNLGPRLSIVDHTGKRIARLGGEQGPGIETGKFLAPHGIALDSRGDIYV 190 LGPG+ +NR VPNLGPRLSIVD G RIARLGGE+GPG+ +GKFLAPHGIALDS+GDIYV Sbjct: 248 LGPGLDINRNVPNLGPRLSIVDAKGNRIARLGGEEGPGVASGKFLAPHGIALDSKGDIYV 307 Query: 191 GEVGVTDWKTSFPDTEMPAAVRVTRCLQKLEKV 223 GEVGVT+W TSFPD EMPA VR TRCLQKLE+V Sbjct: 308 GEVGVTNWATSFPDQEMPAVVRATRCLQKLERV 340 >ref|YP_001208328.1| hypothetical protein BRADO6501 [Bradyrhizobium sp. ORS 278] emb|CAL80113.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 323 Score = 358 bits (920), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 167/213 (78%), Positives = 188/213 (88%), Gaps = 1/213 (0%) Query: 11 QPTAGXGGEPFHRCTHTALSPKGEIYVSDGYGNACIHKYTPDGRLIKSWGEPGTDPGQFN 70 +PT GEPF+RCTHTALSP GEIYVSDGYGNA +HKYTPDG+LI+SWGEPG+DPGQFN Sbjct: 110 RPTPFMSGEPFNRCTHTALSPSGEIYVSDGYGNARVHKYTPDGKLIRSWGEPGSDPGQFN 169 Query: 71 IVHNIATDADGWVYVADRENHRVQVFDGNGRYETQWNNLHRPCALCCCGGGKQPNFVIGE 130 IVHNIATDADG+VYVADRENHR+Q+FDG GRYETQWNNLHRPCALC C G K+ F+IGE Sbjct: 170 IVHNIATDADGFVYVADRENHRIQIFDGEGRYETQWNNLHRPCALCAC-GAKRKTFIIGE 228 Query: 131 LGPGMAVNRKVPNLGPRLSIVDHTGKRIARLGGEQGPGIETGKFLAPHGIALDSRGDIYV 190 LGPGM VN VPNLGPRL+I D TGKR+ARLGGE GPG+ETG+FLAPHG+A+DSRGDIYV Sbjct: 229 LGPGMPVNLNVPNLGPRLTISDSTGKRLARLGGEHGPGLETGRFLAPHGLAIDSRGDIYV 288 Query: 191 GEVGVTDWKTSFPDTEMPAAVRVTRCLQKLEKV 223 GEVGVT+W TSFP MP VR+ RCLQKL++V Sbjct: 289 GEVGVTNWSTSFPGQPMPDEVRIHRCLQKLQRV 321 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 11/166 (6%) Query: 27 TALSPKGEIYVSDGYGNACIHKYTPDGRLIKSWGEPGTDPGQFNIVHNIATDADGWVYVA 86 A+ K +Y + + I + DG ++SWGE G F+ H ++ DAD +Y Sbjct: 32 VAVDSKDRVYAFNRGAHPLI-VFDRDGNFLRSWGE-----GLFSRAHGLSIDADDNLYCT 85 Query: 87 DRENHRVQVFDGNGRYETQWNNLHRPCALCCCGGGKQPNFVIGELGPGMAVNRKVPNLGP 146 D +H V+ +G+ RP G L P + Sbjct: 86 DDGDHTVRKCTPDGKVLLTIGLPERPTPFMS--GEPFNRCTHTALSPSGEIYVSDGYGNA 143 Query: 147 RLSIVDHTGKRIARLGGEQGPGIETGKFLAPHGIALDSRGDIYVGE 192 R+ GK I R GE PG + G+F H IA D+ G +YV + Sbjct: 144 RVHKYTPDGKLI-RSWGE--PGSDPGQFNIVHNIATDADGFVYVAD 186 >ref|YP_001237287.1| hypothetical protein BBta_1132 [Bradyrhizobium sp. BTAi1] gb|ABQ33381.1| hypothetical protein BBta_1132 [Bradyrhizobium sp. BTAi1] Length = 323 Score = 356 bits (913), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 166/213 (77%), Positives = 187/213 (87%), Gaps = 1/213 (0%) Query: 11 QPTAGXGGEPFHRCTHTALSPKGEIYVSDGYGNACIHKYTPDGRLIKSWGEPGTDPGQFN 70 +P GEPF+RCTHTALSP GEIYVSDGYGNA +HKYTPDGRLI+SWGEPG+DPGQFN Sbjct: 110 RPAPFMSGEPFNRCTHTALSPSGEIYVSDGYGNARVHKYTPDGRLIRSWGEPGSDPGQFN 169 Query: 71 IVHNIATDADGWVYVADRENHRVQVFDGNGRYETQWNNLHRPCALCCCGGGKQPNFVIGE 130 IVHNIATDADG+VYVADRENHR+QVFDGNGRYETQWNNLHRPCALC C G ++ F+IGE Sbjct: 170 IVHNIATDADGFVYVADRENHRIQVFDGNGRYETQWNNLHRPCALCAC-GFRRKTFIIGE 228 Query: 131 LGPGMAVNRKVPNLGPRLSIVDHTGKRIARLGGEQGPGIETGKFLAPHGIALDSRGDIYV 190 LGPGM VN VPNLGPRL+I D +G RIARLGGE GPG+ETG+FLAPHG+A+DSRGDIYV Sbjct: 229 LGPGMPVNLNVPNLGPRLTITDASGTRIARLGGEHGPGLETGRFLAPHGLAIDSRGDIYV 288 Query: 191 GEVGVTDWKTSFPDTEMPAAVRVTRCLQKLEKV 223 GEVGVT+W TSFPD MP V+ RCLQKL+++ Sbjct: 289 GEVGVTNWSTSFPDRPMPVEVQTHRCLQKLQRM 321 >ref|NP_770284.1| hypothetical protein blr3644 [Bradyrhizobium japonicum USDA 110] dbj|BAC48909.1| blr3644 [Bradyrhizobium japonicum USDA 110] Length = 157 Score = 277 bits (709), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 128/152 (84%), Positives = 138/152 (90%) Query: 72 VHNIATDADGWVYVADRENHRVQVFDGNGRYETQWNNLHRPCALCCCGGGKQPNFVIGEL 131 +HNI TDADGWVYVADRENHRVQVFDGNG+YE QWNNLHRPCALCCCGGGK P FVIGEL Sbjct: 1 MHNIVTDADGWVYVADRENHRVQVFDGNGKYEAQWNNLHRPCALCCCGGGKSPTFVIGEL 60 Query: 132 GPGMAVNRKVPNLGPRLSIVDHTGKRIARLGGEQGPGIETGKFLAPHGIALDSRGDIYVG 191 GP M VNRKVPNLGPRLSIVD GKRIARLGGE GPG+ +GKFLAPHGIALDS+GD+YVG Sbjct: 61 GPAMPVNRKVPNLGPRLSIVDAKGKRIARLGGEDGPGLASGKFLAPHGIALDSKGDMYVG 120 Query: 192 EVGVTDWKTSFPDTEMPAAVRVTRCLQKLEKV 223 EVGVTDWKT+FPD +MP VR TRCLQKL++V Sbjct: 121 EVGVTDWKTNFPDEDMPTVVRTTRCLQKLQRV 152 >ref|ZP_06840739.1| Peptidylamidoglycolate lyase [Burkholderia sp. Ch1-1] gb|EFG71459.1| Peptidylamidoglycolate lyase [Burkholderia sp. Ch1-1] Length = 322 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 131/223 (58%), Positives = 162/223 (72%), Gaps = 6/223 (2%) Query: 1 MTATTPCASVQPTAGXGGEPFHRCTHTALSPKGEIYVSDGYGNACIHKYTPDGRLIKSWG 60 MT TP + +G EPF+RCTHTALSP+G+IYVSDGYGN IHKY+PDG+L+ SWG Sbjct: 104 MTLGTPGKAAPFMSG---EPFNRCTHTALSPRGDIYVSDGYGNGRIHKYSPDGKLLFSWG 160 Query: 61 EPGTDPGQFNIVHNIATDADGWVYVADRENHRVQVFDGNGRYETQWNNLHRPCALCCCGG 120 E G+DPGQFN+ HNI+ D DGWVYVADRENHR+QVFDG GR+ETQW+ LHRPC + Sbjct: 161 ESGSDPGQFNLPHNISCDEDGWVYVADRENHRIQVFDGEGRFETQWHELHRPCGMYMP-A 219 Query: 121 GKQPNFVIGELGPGMAVNRKVPNLGPRLSIVDHTGKRIARLGGEQGPGIETGKFLAPHGI 180 GK P +GE GP NR PNLGPR+SI+ + G+ +AR+ GI +G+FL+PHG+ Sbjct: 220 GKCPICYVGETGPYWGFNRGAPNLGPRVSILSNKGELLARITSNPAAGIGSGQFLSPHGL 279 Query: 181 ALDSRGDIYVGEVGVTDWKTSFPDTEMPAAVRVTRCLQKLEKV 223 A+DSRGD+YVGEVG T W + FP+ MP RCLQK +V Sbjct: 280 AVDSRGDVYVGEVGYTAWPSLFPEVPMPD--EGLRCLQKFARV 320