BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0104.0061.p         (185 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001208329.1| putative HNH endonuclease:HNH nuclease [Brad...   375   e-102
ref|ZP_01045876.1| HNH endonuclease [Nitrobacter sp. Nb-311A] >g...   364   3e-99
ref|YP_779735.1| HNH endonuclease [Rhodopseudomonas palustris Bi...   363   9e-99
ref|YP_578679.1| HNH endonuclease [Nitrobacter hamburgensis X14]...   362   2e-98
ref|YP_317363.1| HNH endonuclease [Nitrobacter winogradskyi Nb-2...   361   3e-98

>ref|YP_001208329.1| putative HNH endonuclease:HNH nuclease [Bradyrhizobium sp. ORS 278]
 ref|YP_001237286.1| putative HNH endonuclease [Bradyrhizobium sp. BTAi1]
 emb|CAL80114.1| putative HNH endonuclease:HNH nuclease [Bradyrhizobium sp. ORS 278]
 gb|ABQ33380.1| putative HNH endonuclease [Bradyrhizobium sp. BTAi1]
          Length = 185

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/185 (95%), Positives = 182/185 (98%)

Query: 1   LNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAVRSPSFE 60
           +NAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRA+RSPSFE
Sbjct: 1   MNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAIRSPSFE 60

Query: 61  IQLPSVVSLKSFVKPTTHPAFTRFNVFLRDRFSCQYCLSGDDLTFDHIIPRSKGGQTTWE 120
           IQLPSVVSLKSFVKPTTHPAFTRFNVFLRDRF CQYC SGDDLTFDH+IPRSKGGQTTWE
Sbjct: 61  IQLPSVVSLKSFVKPTTHPAFTRFNVFLRDRFVCQYCHSGDDLTFDHVIPRSKGGQTTWE 120

Query: 121 NVVAACSPCNLRKGNLTPQQAKMFPKQTPYAPTVHQLHRNGRLFPPNYLHESWLDYLYWD 180
           NVVAACSPCNL+KGNLTPQQAKMFPKQ PYAPTVHQLHRNGRLFPPNYLH+SWLDYLYWD
Sbjct: 121 NVVAACSPCNLKKGNLTPQQAKMFPKQAPYAPTVHQLHRNGRLFPPNYLHDSWLDYLYWD 180

Query: 181 TELDP 185
           TELDP
Sbjct: 181 TELDP 185


>ref|ZP_01045876.1| HNH endonuclease [Nitrobacter sp. Nb-311A]
 gb|EAQ36247.1| HNH endonuclease [Nitrobacter sp. Nb-311A]
          Length = 206

 Score =  364 bits (935), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 172/185 (92%), Positives = 179/185 (96%)

Query: 1   LNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAVRSPSFE 60
           LNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVE YDRAVRSPSFE
Sbjct: 22  LNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVERYDRAVRSPSFE 81

Query: 61  IQLPSVVSLKSFVKPTTHPAFTRFNVFLRDRFSCQYCLSGDDLTFDHIIPRSKGGQTTWE 120
           IQLPSVVSLKSFVKP+THPAFTRFNVFLRDRF CQYC + +DLTFDHIIPRSKGGQTTW+
Sbjct: 82  IQLPSVVSLKSFVKPSTHPAFTRFNVFLRDRFMCQYCTAVEDLTFDHIIPRSKGGQTTWD 141

Query: 121 NVVAACSPCNLRKGNLTPQQAKMFPKQTPYAPTVHQLHRNGRLFPPNYLHESWLDYLYWD 180
           NVVAACSPCNLRKGNLTPQQA MFP+Q P+APTVHQLHRNGRLFPPNYLH+SWLDYLYWD
Sbjct: 142 NVVAACSPCNLRKGNLTPQQAGMFPRQAPFAPTVHQLHRNGRLFPPNYLHDSWLDYLYWD 201

Query: 181 TELDP 185
           TELDP
Sbjct: 202 TELDP 206


>ref|YP_779735.1| HNH endonuclease [Rhodopseudomonas palustris BisA53]
 gb|ABJ04755.1| HNH endonuclease [Rhodopseudomonas palustris BisA53]
          Length = 185

 Score =  363 bits (931), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 170/185 (91%), Positives = 180/185 (97%)

Query: 1   LNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAVRSPSFE 60
           +NAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVE+YDRAV SPSFE
Sbjct: 1   MNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVEFYDRAVHSPSFE 60

Query: 61  IQLPSVVSLKSFVKPTTHPAFTRFNVFLRDRFSCQYCLSGDDLTFDHIIPRSKGGQTTWE 120
           +QLPSVVSLKSFVKPTTHPAFTRFNVFLRDRF CQYC + +DLTFDHI+PRSKGGQTTWE
Sbjct: 61  MQLPSVVSLKSFVKPTTHPAFTRFNVFLRDRFVCQYCGAPEDLTFDHIMPRSKGGQTTWE 120

Query: 121 NVVAACSPCNLRKGNLTPQQAKMFPKQTPYAPTVHQLHRNGRLFPPNYLHESWLDYLYWD 180
           NVVAACSPCNLRKGNLTP QAKMFP+Q+P+APTVHQLHRNGRLFPPNYLH+SWLDYLYWD
Sbjct: 121 NVVAACSPCNLRKGNLTPHQAKMFPRQSPFAPTVHQLHRNGRLFPPNYLHQSWLDYLYWD 180

Query: 181 TELDP 185
           TELDP
Sbjct: 181 TELDP 185


>ref|YP_578679.1| HNH endonuclease [Nitrobacter hamburgensis X14]
 gb|ABE64219.1| HNH endonuclease [Nitrobacter hamburgensis X14]
          Length = 185

 Score =  362 bits (929), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 169/185 (91%), Positives = 180/185 (97%)

Query: 1   LNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAVRSPSFE 60
           +NAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFL+RVNIVE+YDRAVRSPSFE
Sbjct: 1   MNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLERVNIVEHYDRAVRSPSFE 60

Query: 61  IQLPSVVSLKSFVKPTTHPAFTRFNVFLRDRFSCQYCLSGDDLTFDHIIPRSKGGQTTWE 120
           IQLPSVVSLKSFVKP+THPAFTRFNVFLRDRF CQYC + +DLTFDHIIPRSKGGQTTW+
Sbjct: 61  IQLPSVVSLKSFVKPSTHPAFTRFNVFLRDRFMCQYCTASEDLTFDHIIPRSKGGQTTWD 120

Query: 121 NVVAACSPCNLRKGNLTPQQAKMFPKQTPYAPTVHQLHRNGRLFPPNYLHESWLDYLYWD 180
           NVVAACSPCNLRKGNLTP+QA MFP+Q P+APTVHQLHRNGRLFPPNYLH+SWLDYLYWD
Sbjct: 121 NVVAACSPCNLRKGNLTPRQAGMFPRQAPFAPTVHQLHRNGRLFPPNYLHDSWLDYLYWD 180

Query: 181 TELDP 185
           TELDP
Sbjct: 181 TELDP 185


>ref|YP_317363.1| HNH endonuclease [Nitrobacter winogradskyi Nb-255]
 gb|ABA04011.1| HNH endonuclease [Nitrobacter winogradskyi Nb-255]
          Length = 191

 Score =  361 bits (926), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 171/185 (92%), Positives = 179/185 (96%)

Query: 1   LNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVEYYDRAVRSPSFE 60
           LNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVE YDRAVRSPSFE
Sbjct: 7   LNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAIKAVFLDRVNIVERYDRAVRSPSFE 66

Query: 61  IQLPSVVSLKSFVKPTTHPAFTRFNVFLRDRFSCQYCLSGDDLTFDHIIPRSKGGQTTWE 120
           IQLPSVVSLKSFVKP+THPAFTRFNVFLRDRF CQYC + +DLTFDHIIPRSKGGQTTW+
Sbjct: 67  IQLPSVVSLKSFVKPSTHPAFTRFNVFLRDRFMCQYCTAVEDLTFDHIIPRSKGGQTTWD 126

Query: 121 NVVAACSPCNLRKGNLTPQQAKMFPKQTPYAPTVHQLHRNGRLFPPNYLHESWLDYLYWD 180
           NVVAACSPCNLRKG+LTPQQA MFP+Q P+APTVHQLHRNGRLFPPNYLH+SWLDYLYWD
Sbjct: 127 NVVAACSPCNLRKGSLTPQQAGMFPRQAPFAPTVHQLHRNGRLFPPNYLHDSWLDYLYWD 186

Query: 181 TELDP 185
           TELDP
Sbjct: 187 TELDP 191