BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0056.p (453 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770492.1| hypothetical protein blr3852 [Bradyrhizobium ja... 705 0.0 ref|YP_001206616.1| putative efflux transporter permease fusaric... 499 e-139 ref|YP_003069919.1| efflux transporter permease, aromatic acid e... 397 e-108 ref|YP_001922961.1| fusaric acid resistance protein conserved re... 397 e-108 ref|YP_002363611.1| Fusaric acid resistance protein conserved re... 363 3e-98 >ref|NP_770492.1| hypothetical protein blr3852 [Bradyrhizobium japonicum USDA 110] dbj|BAC49117.1| blr3852 [Bradyrhizobium japonicum USDA 110] Length = 682 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/449 (78%), Positives = 398/449 (88%) Query: 1 MRAEEPFLVRHADLVFALKTFAASMLALVIALAIDLPRPYWAMATVYITSQPLAGATSSK 60 MRA+EPFLVRHADLVFALKTFAASMLALVIALA+DLPRPYWAMATVYITSQPLAGATSSK Sbjct: 1 MRADEPFLVRHADLVFALKTFAASMLALVIALAMDLPRPYWAMATVYITSQPLAGATSSK 60 Query: 61 AFFRVIGTLVGASVTVALVPNLVNAPELLCLVIALWVGLCLYLSLLDGTPRSYVFMLGGY 120 AFFRV+GTL GA++TVALVPNL++APELLCL IALWVGLCLYLSLLDGTPRSYVFML GY Sbjct: 61 AFFRVMGTLAGAAMTVALVPNLIDAPELLCLAIALWVGLCLYLSLLDGTPRSYVFMLAGY 120 Query: 121 TVALIGFPSVADPGSIFDVALARVEEISLGIICASLVSTVVFPRSVAPAVGGRVRSWLSD 180 TVALIGFPSV++PG+IFD A+AR+EEISLGIICASLVST+VFPRSVAPAV RV +WL+D Sbjct: 121 TVALIGFPSVSEPGAIFDTAVARLEEISLGIICASLVSTIVFPRSVAPAVAHRVDAWLAD 180 Query: 181 ARRLSRDVLLDRGTSETRRAQRLRLATDIVEIDTLATHVAYDRLADVGTVRGLGEVRLRM 240 ARRLS+ VLL GTSET RA+RL+LATDIVEIDTL+TH+AYDRL D V GLGE+RLRM Sbjct: 181 ARRLSQVVLLREGTSETHRAKRLKLATDIVEIDTLSTHLAYDRLTDRNAVTGLGEIRLRM 240 Query: 241 LMLLPIITSIEDRLAGLGEAALQKQPELRRLIEDLAAWIVDEDRLRQSGEQIRAAIAERQ 300 L LLP+I S+EDRLA LGE AL++QP L+RL+EDLA WI + RQ E+IRAAI+ +Q Sbjct: 241 LTLLPVIASLEDRLAALGEEALRRQPGLKRLLEDLAQWIASDVGARQPAERIRAAISGQQ 300 Query: 301 SALDGVASRERIITISLLLRLRELVDISADCRAIGDAIAAGRDISTVPLAFHPESGAAPV 360 + LD A ERIIT SLLLRLRELVD+S DCRA+ +AIA R+++T+ LAFH E+GAAPV Sbjct: 301 AVLDDGADWERIITTSLLLRLRELVDLSRDCRALTEAIAESRNVATIDLAFHSEAGAAPV 360 Query: 361 RHRDHGMALWSAAGAAVAILICCGLWIATGWPDGASAPMMAAVACSFFAAQDEPARSIRA 420 RHRD G+ALWSAAGA VAILICC WI TGWPDGASAPMMAAVACSFFAAQDEPAR IR+ Sbjct: 361 RHRDRGLALWSAAGAVVAILICCAFWIGTGWPDGASAPMMAAVACSFFAAQDEPARFIRS 420 Query: 421 FGLFSLVAIVVVAIYQFALVPGISHVEVL 449 FG +SLVAIVVVA+Y FA+VP ISH+EVL Sbjct: 421 FGRWSLVAIVVVAVYLFAVVPAISHIEVL 449 >ref|YP_001206616.1| putative efflux transporter permease fusaric acid resistance pump [Bradyrhizobium sp. ORS 278] emb|CAL78399.1| putative efflux transporter permease; putative fusaric acid resistance pump [Bradyrhizobium sp. ORS 278] Length = 683 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 288/452 (63%), Positives = 346/452 (76%), Gaps = 4/452 (0%) Query: 1 MRAEEPFLVRHADLVFALKTFAASMLALVIALAIDLPRPYWAMATVYITSQPLAGATSSK 60 MR F +R ADL F+ KTFAA+MLAL+IAL IDLPRPYWAMATVYITSQPLAGAT+SK Sbjct: 1 MRNTTSFPLRGADLAFSAKTFAAAMLALLIALWIDLPRPYWAMATVYITSQPLAGATASK 60 Query: 61 AFFRVIGTLVGASVTVALVPNLVNAPELLCLVIALWVGLCLYLSLLDGTPRSYVFMLGGY 120 A +RV+GTL GA+ VA+VP VN+PELL LVIALW G+CLY+SLLD TPRSY+FML GY Sbjct: 61 ALYRVLGTLAGAAAAVAIVPAFVNSPELLSLVIALWTGICLYVSLLDRTPRSYLFMLAGY 120 Query: 121 TVALIGFPSVADPGSIFDVALARVEEISLGIICASLVSTVVFPRSVAPAVGGRVRSWLSD 180 T+ALIGFP+VADP IFDVA+AR +EI+LGI+CA+LVST+V PRSVAPAV +V WL + Sbjct: 121 TLALIGFPAVADPAGIFDVAVARAQEITLGIVCATLVSTIVLPRSVAPAVAAKVEHWLDE 180 Query: 181 ARRLSRDVLLDRGTSETRRAQRLRLATDIVEIDTLATHVAYDRLADVGTVRGLGEVRLRM 240 ARRLSRDVLL G RA RLRLA + +EIDTLATH+A+DR AD V GL +RL M Sbjct: 181 ARRLSRDVLLGGGGGVDDRAHRLRLAAEALEIDTLATHLAFDRGADHHAVEGLRSLRLHM 240 Query: 241 LMLLPIITSIEDRLAGLGEAALQKQPELRRLIEDLAAWIVDEDRLRQSGEQIRAAIAERQ 300 +LLP++ SI DRLA L EL L++ LA WIV D R+ ++RA I + Sbjct: 241 QLLLPLLGSIHDRLAALDG---HVDRELSDLLQRLAGWIVAGDD-REPASRLRAVIDALR 296 Query: 301 SALDGVASRERIITISLLLRLRELVDISADCRAIGDAIAAGRDISTVPLAFHPESGAAPV 360 +L+G +S +RI+ SLL+RLRELVDI+ DCRA+ AIAAG D + VPLAF E G AP Sbjct: 297 PSLEGRSSWDRIMIASLLIRLRELVDIAEDCRALNAAIAAGEDTAKVPLAFRSEQGIAPA 356 Query: 361 RHRDHGMALWSAAGAAVAILICCGLWIATGWPDGASAPMMAAVACSFFAAQDEPARSIRA 420 RHRDH +ALWSAAG +AIL+CC WIATGW DGASAPMMAAVACSFFA+QD+PA SI Sbjct: 357 RHRDHALALWSAAGVVIAILVCCAFWIATGWADGASAPMMAAVACSFFASQDDPAPSIVR 416 Query: 421 FGLFSLVAIVVVAIYQFALVPGISHVEVLXAS 452 F +SLVAIV+ A+Y FA++P IS VE+L A+ Sbjct: 417 FAAWSLVAIVIDAVYLFAIIPAISDVELLIAA 448 >ref|YP_003069919.1| efflux transporter permease, aromatic acid exporter family [Methylobacterium extorquens DM4] emb|CAX26092.1| putative efflux transporter permease, aromatic acid exporter family [Methylobacterium extorquens DM4] Length = 676 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 222/443 (50%), Positives = 294/443 (66%), Gaps = 16/443 (3%) Query: 13 DLVFALKTFAASMLALVIALAIDLPRPYWAMATVYITSQPLAGATSSKAFFRVIGTLVGA 72 D F+LKTFAA++LAL +A IDLP PYWA+ TVYITSQ LAGAT SKA +RV+GTL+GA Sbjct: 8 DWAFSLKTFAAAILALFLAFWIDLPNPYWALGTVYITSQVLAGATRSKALYRVLGTLLGA 67 Query: 73 SVTVALVPNLVNAPELLCLVIALWVGLCLYLSLLDGTPRSYVFMLGGYTVALIGFPSVAD 132 +V+VALVPNLVNAPELL L +ALWV CLY SLLD TPRSY+ MLGGYT ALIGFP+V D Sbjct: 68 AVSVALVPNLVNAPELLTLAVALWVATCLYFSLLDRTPRSYLMMLGGYTAALIGFPAVGD 127 Query: 133 PGSIFDVALARVEEISLGIICASLVSTVVFPRSVAPAVGGRVRSWLSDARRLSRDVLLDR 192 PG++FD A+AR EEI+LGI+CASLV+TVV P+SVAP + R+ WL DAR +VL Sbjct: 128 PGTMFDAAVARAEEITLGILCASLVNTVVLPQSVAPVITARLDLWLRDARAWVINVLGRT 187 Query: 193 GTSETRRAQRLRLATDIVEIDTLATHVAYDRLADVGTVRGLGEVRLRMLMLLPIITSIED 252 T++ +A RL+LA+D V D LAT + YD + + +R MLM LPI +++ D Sbjct: 188 RTAKDTQATRLKLASDAVAFDALATPLRYDMTGAERSAEAMATLRQHMLMFLPIASAVSD 247 Query: 253 RLAGLGEAALQKQPELRRLIEDLAAWI-------VDEDRLRQSGEQIRAAIAERQSALDG 305 R+ L A Q LR L++++ AW+ DRL+ + + + A+ ER Sbjct: 248 RIETLERAGPLPQ-SLRSLLDNMTAWLASGSTDQAQADRLKATADALEPALGERP----- 301 Query: 306 VASRERIITISLLLRLRELVDISADCRAIGDAIAAGRDISTVPLAFHPESGAAPVRHRDH 365 S + ++ SLL RLR+ +D+ D R + IA G + T + F + A +RHRDH Sbjct: 302 --SWDALVLASLLARLRDFIDLRQDARILQRHIADGTPV-TEDMTFRYTAAARTIRHRDH 358 Query: 366 GMALWSAAGAAVAILICCGLWIATGWPDGASAPMMAAVACSFFAAQDEPARSIRAFGLFS 425 GMAL SA G + IL+ C +WIATGWP G++APMMAAV CSFFAAQD+PA I +F + Sbjct: 359 GMALLSAVGVFLTILVTCAIWIATGWPHGSAAPMMAAVGCSFFAAQDDPAPFIVSFANSA 418 Query: 426 LVAIVVVAIYQFALVPGISHVEV 448 ++ + Y FA++P + E+ Sbjct: 419 ILGALGAGAYLFAILPLATTFEM 441 >ref|YP_001922961.1| fusaric acid resistance protein conserved region [Methylobacterium populi BJ001] gb|ACB78426.1| Fusaric acid resistance protein conserved region [Methylobacterium populi BJ001] Length = 680 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 224/436 (51%), Positives = 290/436 (66%), Gaps = 2/436 (0%) Query: 13 DLVFALKTFAASMLALVIALAIDLPRPYWAMATVYITSQPLAGATSSKAFFRVIGTLVGA 72 D FALKTFAA+MLAL +A IDLP PYWA+ TVYITSQ LAGAT SKA +RV+GTL+GA Sbjct: 8 DWAFALKTFAAAMLALFLAFWIDLPNPYWALGTVYITSQVLAGATRSKALYRVLGTLLGA 67 Query: 73 SVTVALVPNLVNAPELLCLVIALWVGLCLYLSLLDGTPRSYVFMLGGYTVALIGFPSVAD 132 VTVALVPNLVNAPELL L IALWV CLY SLLD TPRSY+ MLGGYT ALIGFP+V Sbjct: 68 VVTVALVPNLVNAPELLTLAIALWVAACLYFSLLDRTPRSYLMMLGGYTAALIGFPAVGA 127 Query: 133 PGSIFDVALARVEEISLGIICASLVSTVVFPRSVAPAVGGRVRSWLSDARRLSRDVLLDR 192 PG++FD A+AR EEI+LGI+CASLV+TVV P+SVAP + R+ WL DAR +VL Sbjct: 128 PGTMFDTAVARAEEITLGILCASLVNTVVLPQSVAPVITARLDLWLRDARSWVINVLGRA 187 Query: 193 GTSETRRAQRLRLATDIVEIDTLATHVAYDRLADVGTVRGLGEVRLRMLMLLPIITSIED 252 T + +A RL+LA+D V D LAT + YD + + +R MLM LPI +++ D Sbjct: 188 RTGKDTQATRLKLASDAVAFDALATPLRYDMTGAERSAEAMATLRQHMLMFLPIASAVSD 247 Query: 253 RLAGLGEAALQKQPELRRLIEDLAAWIVDEDRLRQSGEQIRAAIAERQSALDGVASRERI 312 R+ L Q LR L++D+A W+ + ++++AA + AL AS + + Sbjct: 248 RIDTLERMGSLPQ-RLRSLLDDMAGWLASGTTEQAQADRLKAAADALEPALGERASWDAL 306 Query: 313 ITISLLLRLRELVDISADCRAIGDAIAAGRDISTVPLAFHPESGAAPVRHRDHGMALWSA 372 + SLL RLR+ +D+ D R + IA G + T + F + A +RHRDHGMAL SA Sbjct: 307 VLASLLARLRDFIDLRQDARILQRHIADGTPV-TEAMTFRYTAAARTIRHRDHGMALLSA 365 Query: 373 AGAAVAILICCGLWIATGWPDGASAPMMAAVACSFFAAQDEPARSIRAFGLFSLVAIVVV 432 G + IL+ C +WIATGWP G++APMMAAV CSFFAAQD+PA I +F +++ + Sbjct: 366 VGVFLTILVTCAIWIATGWPHGSAAPMMAAVGCSFFAAQDDPAPFIVSFANSAILGALGA 425 Query: 433 AIYQFALVPGISHVEV 448 Y FA++P + E+ Sbjct: 426 GAYLFAVLPLATTFEM 441 >ref|YP_002363611.1| Fusaric acid resistance protein conserved region [Methylocella silvestris BL2] gb|ACK52249.1| Fusaric acid resistance protein conserved region [Methylocella silvestris BL2] Length = 688 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 219/448 (48%), Positives = 287/448 (64%), Gaps = 9/448 (2%) Query: 6 PFLVRHADLVFALKTFAASMLALVIALAIDLPRPYWAMATVYITSQPLAGATSSKAFFRV 65 P+ VR D +FALKTFAA+ AL + + L RPYWA+ATVYI SQ L+GAT SKAF+R Sbjct: 3 PYTVR--DWLFALKTFAAAAAALYLCFWLQLQRPYWAVATVYICSQQLSGATRSKAFYRA 60 Query: 66 IGTLVGASVTVALVPNLVNAPELLCLVIALWVGLCLYLSLLDGTPRSYVFMLGGYTVALI 125 GT++GA+++VALVPNLVNAPELL L IALW+ CLY SLLD TPR Y+F+L GYT ALI Sbjct: 61 CGTVLGAAMSVALVPNLVNAPELLSLAIALWIACCLYFSLLDRTPRGYMFILAGYTAALI 120 Query: 126 GFPSVADPGSIFDVALARVEEISLGIICASLVSTVVFPRSVAPAVGGRVRSWLSDARRLS 185 GFPSV PG IFDVA+ARVEEI +GI CA++ STV FPR V P GR+++W +DA + Sbjct: 121 GFPSVDAPGMIFDVAVARVEEILVGIACATVFSTVFFPRQVGPLAAGRLKAWFTDADLWA 180 Query: 186 RDVLLDRGTSETRRAQRLRLATDIVEIDTLATHVAYDRLADVGTVRGLGEVRLRMLMLLP 245 D L R + A+RLRLA D ++D L+ H+A+D R + +RLR+LMLLP Sbjct: 181 CDALEARIGDDVLSARRLRLAADATQLDALSIHLAFDASIQSYAARAIRLLRLRLLMLLP 240 Query: 246 IITSIEDRL---AGLGEAALQKQPELRRLIEDLAAWIVDEDRLRQSGE-QIRAAIAERQS 301 +I+SIE+R+ AG G AL E + L++ + A + D+ + E Q IA + Sbjct: 241 VISSIEERMRTIAGGGRLALA---ETQALVDSICATLRDDADISAEQEAQTDDLIAAYER 297 Query: 302 ALDGVASRERIITISLLLRLRELVDISADCRAIGDAIAAGRDISTVPLAFHPESGAAPVR 361 LD + I+ LLLRLR+ V+I DCR + I G PLAF +G R Sbjct: 298 RLDAGSCAREIVEAGLLLRLRDFVNIRRDCRLLCGQIETGARQLKRPLAFQSPAGVVDAR 357 Query: 362 HRDHGMALWSAAGAAVAILICCGLWIATGWPDGASAPMMAAVACSFFAAQDEPARSIRAF 421 HRD A SA A V + C WIAT WPDGA+A M+AA+ C FA+Q +PA +RAF Sbjct: 358 HRDRFGAAVSALTAFVCVGGVCLFWIATAWPDGATAAMIAAIVCCIFASQADPAAVLRAF 417 Query: 422 GLFSLVAIVVVAIYQFALVPGISHVEVL 449 ++S+VA+ V +Y FA++P I E+L Sbjct: 418 AVWSVVAVGVTMLYLFAILPRIQTFEML 445