BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0052.p (210 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770492.1| hypothetical protein blr3852 [Bradyrhizobium ja... 320 1e-85 ref|YP_001206616.1| putative efflux transporter permease fusaric... 248 5e-64 gb|AEL09360.1| fusaric acid resistance protein conserved region ... 159 3e-37 ref|YP_003069919.1| efflux transporter permease, aromatic acid e... 157 9e-37 ref|NP_639505.1| hypothetical protein XCC4171 [Xanthomonas campe... 157 1e-36 >ref|NP_770492.1| hypothetical protein blr3852 [Bradyrhizobium japonicum USDA 110] dbj|BAC49117.1| blr3852 [Bradyrhizobium japonicum USDA 110] Length = 682 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 158/205 (77%), Positives = 182/205 (88%) Query: 2 ALAANTATLLALQSTYSADFASFANTSVAFFLGVVIAEIVTRIARGVGAEWIAKRLMTSS 61 ALAANTATLLA+QSTYSADFAS+AN++VAFF+G+V+AEIVTRIARGVGAEWIA RL+ S+ Sbjct: 475 ALAANTATLLAIQSTYSADFASYANSAVAFFVGIVVAEIVTRIARGVGAEWIANRLVLSN 534 Query: 62 WQTLAVAAERRGHGDRAQFAGLMLHRLGLLVQRIAFISESDRRDADSLVQLRIGLNIIDL 121 W+++AVAAERRG DRA+FAGLMLHRLGLLVQRIAF+SESDRRD DSLVQLRIG+NIIDL Sbjct: 535 WKSIAVAAERRGKRDRAEFAGLMLHRLGLLVQRIAFLSESDRRDTDSLVQLRIGINIIDL 594 Query: 122 RRARYGLAALTVRAIDDMLDDLAAAFRAHANEAMPAELLSCIDAALTAVVKDPNERARDD 181 RRARYGLAA T+ IDDMLD LA A R +A + MPAELL+ +D AL VKDPN+ AR+D Sbjct: 595 RRARYGLAASTIAVIDDMLDRLAVACRGYAGDGMPAELLTSVDRALAQAVKDPNDSARED 654 Query: 182 ALLGLVGIRRGLFPDAPAYRSQPEE 206 AL+GLVGIRRGLFPDAPAYR + E Sbjct: 655 ALIGLVGIRRGLFPDAPAYRPRAES 679 >ref|YP_001206616.1| putative efflux transporter permease fusaric acid resistance pump [Bradyrhizobium sp. ORS 278] emb|CAL78399.1| putative efflux transporter permease; putative fusaric acid resistance pump [Bradyrhizobium sp. ORS 278] Length = 683 Score = 248 bits (632), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 130/204 (63%), Positives = 156/204 (76%), Gaps = 2/204 (0%) Query: 1 MALAANTATLLALQSTYSADFASFANTSVAFFLGVVIAEIVTRIARGVGAEWIAKRLMTS 60 MAL AN ATLLALQSTYSADF S+AN+++AF +G+V A ++TR+ R V AEWIA+RL+ + Sbjct: 470 MALGANGATLLALQSTYSADFQSYANSAIAFMVGMVAAVVLTRLVRSVRAEWIAQRLLRT 529 Query: 61 SWQTLAVAAERRGHGDRAQFAGLMLHRLGLLVQRIAFISESDRRDADSLVQLRIGLNIID 120 SW+TLA AERRGH DRA F GLML RLGLL QR A I E DRR+ D+L QLR+GLNIID Sbjct: 530 SWETLATTAERRGHHDRAAFVGLMLDRLGLLAQRFAAIPEDDRRELDNLNQLRVGLNIID 589 Query: 121 LRRARYGLAALTVRAIDDMLDDLAAAFRAH--ANEAMPAELLSCIDAALTAVVKDPNERA 178 LRRAR+GL A T+ AID MLD LAAA R MPA+LL+ ID AL + +P A Sbjct: 590 LRRARHGLTAATLGAIDTMLDRLAAACRGRGLGTGMMPADLLAAIDVALLKTLDEPAAPA 649 Query: 179 RDDALLGLVGIRRGLFPDAPAYRS 202 ++DAL+GLVGIR GLFPDAPAY + Sbjct: 650 KEDALIGLVGIRTGLFPDAPAYHA 673 >gb|AEL09360.1| fusaric acid resistance protein conserved region [Xanthomonas campestris pv. raphani 756C] Length = 768 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 94/202 (46%), Positives = 127/202 (62%), Gaps = 5/202 (2%) Query: 1 MALAANTATLLALQSTYSADFASFANTSVAFFLGVVIAEIVTRIARGVGAEWIAKRLMTS 60 + L N LL+LQ+TY+A+ SF N +VA LG+ A ++TR+ R VGAEW A+RL+ Sbjct: 554 LPLVVNLTALLSLQNTYNANIQSFVNAAVAMVLGIGFAVVLTRLFRSVGAEWSARRLVRQ 613 Query: 61 SWQTLAVAAERRGHGDRAQFAGLMLHRLGLLVQRIAFISE-SDRRDADSLVQLRIGLNII 119 W+TLA AA+ RG DR QFA ML LGLL R+A SD D L ++R+GLNI+ Sbjct: 614 GWRTLAAAADGRGAQDRHQFAARMLDLLGLLAPRLAVAPPGSDLASVDMLTEIRVGLNIL 673 Query: 120 DLRRARYGLAALTVRAIDDMLDDLAAAFR---AHANE-AMPAELLSCIDAALTAVVKDPN 175 LRRAR+GL ++ A+D +L D+AA +R AH P L + +DA+L V + P Sbjct: 674 QLRRARHGLPPASIAAVDAILADVAAHYRQQVAHKRPLPGPDTLRTRLDASLARVGQVPA 733 Query: 176 ERARDDALLGLVGIRRGLFPDA 197 RD+ALLGL+G+R LF DA Sbjct: 734 GTHRDEALLGLIGLRSSLFVDA 755 >ref|YP_003069919.1| efflux transporter permease, aromatic acid exporter family [Methylobacterium extorquens DM4] emb|CAX26092.1| putative efflux transporter permease, aromatic acid exporter family [Methylobacterium extorquens DM4] Length = 676 Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 96/211 (45%), Positives = 132/211 (62%), Gaps = 2/211 (0%) Query: 1 MALAANTATLLALQSTYSADFASFANTSVAFFLGVVIAEIVTRIARGVGAEWIAKRLMTS 60 M A N + ++ALQ +YSADFA+FAN+S+A +G+ A IVTR+ R VGA W A+RL Sbjct: 467 MGAAVNGSAMIALQGSYSADFAAFANSSIAVVVGMWGAAIVTRLVRSVGAGWSARRLRGV 526 Query: 61 SWQTLAVAAERRGHGDRAQFAGLMLHRLGLLVQRIAFISESD-RRDADSLVQLRIGLNII 119 + + LA AAER+G + + A LML R+GL+ R+A + D AD L ++R+G+N++ Sbjct: 527 NRRELARAAERQGAQNGLELAALMLDRVGLIAPRLAALPSDDAEWTADLLAEVRVGINVV 586 Query: 120 DLRRARYGLAALTVRAIDDMLDDLAAAFRAHANEAMPAELLSCIDAALTAVVKDPNERAR 179 +LRR R L A++ +L L+ FRA A P +LL IDAAL AV + + Sbjct: 587 ELRRDRRRLPKAAREAVEALLTALSRHFRAKPETAGP-DLLDTIDAALDAVSAEARQAPG 645 Query: 180 DDALLGLVGIRRGLFPDAPAYRSQPEESFAA 210 AL+GLVGIRRGLFP A YRS P+ AA Sbjct: 646 RAALMGLVGIRRGLFPGAAPYRSTPQSERAA 676 >ref|NP_639505.1| hypothetical protein XCC4171 [Xanthomonas campestris pv. campestris str. ATCC 33913] ref|YP_245316.1| hypothetical protein XC_4258 [Xanthomonas campestris pv. campestris str. 8004] ref|YP_001905790.1| hypothetical protein xccb100_4385 [Xanthomonas campestris pv. campestris str. B100] gb|AAM43387.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAY51296.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] emb|CAP53755.1| Putative membrane protein [Xanthomonas campestris pv. campestris] Length = 766 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 93/202 (46%), Positives = 126/202 (62%), Gaps = 5/202 (2%) Query: 1 MALAANTATLLALQSTYSADFASFANTSVAFFLGVVIAEIVTRIARGVGAEWIAKRLMTS 60 + L N LL+LQ+TY+A+ SF N +VA LG+ A ++TR+ R VGAEW A+RL+ Sbjct: 552 LPLVVNLTALLSLQNTYNANIQSFVNAAVAMVLGIGFAVVLTRLFRSVGAEWSARRLVRQ 611 Query: 61 SWQTLAVAAERRGHGDRAQFAGLMLHRLGLLVQRIAFISE-SDRRDADSLVQLRIGLNII 119 W+TLA AA+ RG DR QFA ML LGLL R+A SD D L ++R+GLNI+ Sbjct: 612 GWRTLAAAADGRGAQDRHQFAARMLDLLGLLAPRLAVAPPGSDLASVDMLTEIRVGLNIL 671 Query: 120 DLRRARYGLAALTVRAIDDMLDDLAAAFR---AHANE-AMPAELLSCIDAALTAVVKDPN 175 LRRAR+GL ++ A+D +L D+A +R AH P L + +DA+L V + P Sbjct: 672 QLRRARHGLPPASIAAVDAILADVATHYRQQVAHKRPLPGPDTLRTRLDASLARVGQVPA 731 Query: 176 ERARDDALLGLVGIRRGLFPDA 197 RD+ALLGL+G+R LF DA Sbjct: 732 GTHRDEALLGLIGLRSSLFVDA 753