BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0050.p (288 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770494.1| hypothetical protein blr3854 [Bradyrhizobium ja... 494 e-138 ref|YP_001206618.1| multidrug resistance membrane protein [Brady... 436 e-120 ref|YP_002363607.1| RND family efflux transporter MFP subunit [M... 385 e-105 ref|YP_001922959.1| RND family efflux transporter MFP subunit [M... 367 1e-99 ref|YP_003069921.1| efflux pump component, secretion protein Hly... 365 5e-99 >ref|NP_770494.1| hypothetical protein blr3854 [Bradyrhizobium japonicum USDA 110] dbj|BAC49119.1| blr3853 [Bradyrhizobium japonicum USDA 110] Length = 288 Score = 494 bits (1271), Expect = e-138, Method: Compositional matrix adjust. Identities = 246/288 (85%), Positives = 271/288 (94%) Query: 1 MKGNFAWLGRVALTAIAVIAALAVARALWVYYMEAPWTRDGRVRADIVQVAPDVSGFVTD 60 MKGNFAWLGR+ALT I V+AALAV R LWVYYME PWTRDGRVRAD+VQVAPDVSGFVT+ Sbjct: 1 MKGNFAWLGRLALTVIVVVAALAVGRELWVYYMEQPWTRDGRVRADVVQVAPDVSGFVTE 60 Query: 61 VLVKDNQPVHRGDILFRIDRARFALALKQADAAVAGHRATLDQADADLKRYSSLTTDAVS 120 VLVKDNQ V RGD+LFRIDR RFALAL+QA+A+VAGH+ATLDQA+ADLKRY++LTTDAVS Sbjct: 61 VLVKDNQKVRRGDVLFRIDRERFALALRQAEASVAGHQATLDQANADLKRYNALTTDAVS 120 Query: 121 QQKQEQVLATQLQAKAAYDQAVADRAVAQLNLDRSEVHASVNGTITNMDLRPGAYVTAGK 180 QQKQEQVLATQLQAKAA+DQAVADRA+AQLNLDRSEVHASVNG ITNMDLRPGAYVTAGK Sbjct: 121 QQKQEQVLATQLQAKAAFDQAVADRALAQLNLDRSEVHASVNGVITNMDLRPGAYVTAGK 180 Query: 181 GVMALVDTDTLHVEGYFEETKLARIRVGDKAQIRLMGEPVRLTGHVESIAAGIEDRDRAA 240 GVMALVDTDTLHVEGYFEETKLARIR GDK ++RLMGE V L+G VESIAAGIEDRDRA Sbjct: 181 GVMALVDTDTLHVEGYFEETKLARIRTGDKVRVRLMGEKVTLSGRVESIAAGIEDRDRAE 240 Query: 241 GASLLANVNPTFSWVRLAQRIPVRIALDHLPDRIALVAGRSATVEIMD 288 GAS+LANVNPTFSWVRLAQR+PVRIALD +P+ ++LVAGRSATVE++D Sbjct: 241 GASMLANVNPTFSWVRLAQRVPVRIALDPVPENMSLVAGRSATVEVLD 288 >ref|YP_001206618.1| multidrug resistance membrane protein [Bradyrhizobium sp. ORS 278] emb|CAL78401.1| putative multidrug resistance membrane protein (MFP family) [Bradyrhizobium sp. ORS 278] Length = 288 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 226/288 (78%), Positives = 253/288 (87%) Query: 1 MKGNFAWLGRVALTAIAVIAALAVARALWVYYMEAPWTRDGRVRADIVQVAPDVSGFVTD 60 MK FA LGRVA+TA AV AA+ V LW YYM+APWTRDGRVRADIVQVAPDVSGFVT+ Sbjct: 1 MKSTFALLGRVAVTAAAVAAAILVGTYLWGYYMKAPWTRDGRVRADIVQVAPDVSGFVTE 60 Query: 61 VLVKDNQPVHRGDILFRIDRARFALALKQADAAVAGHRATLDQADADLKRYSSLTTDAVS 120 VLV+DNQPVH+GD++FRIDRARF LAL+QADA VAG ATL+QA+ADL RY SLTT+AVS Sbjct: 61 VLVRDNQPVHQGDVIFRIDRARFKLALQQADAVVAGRLATLNQANADLDRYRSLTTEAVS 120 Query: 121 QQKQEQVLATQLQAKAAYDQAVADRAVAQLNLDRSEVHASVNGTITNMDLRPGAYVTAGK 180 QQKQEQVLATQ QA+A+YDQA+AD+AVA+LNL+RS+VHA VNG ITNMD+RPGAYV+AGK Sbjct: 121 QQKQEQVLATQQQAQASYDQALADQAVAKLNLERSDVHAPVNGVITNMDVRPGAYVSAGK 180 Query: 181 GVMALVDTDTLHVEGYFEETKLARIRVGDKAQIRLMGEPVRLTGHVESIAAGIEDRDRAA 240 GVMALVDTDTLHVEGYFEETKL RIRVG +IRLMG LTGHVESIAAGIEDRDRA Sbjct: 181 GVMALVDTDTLHVEGYFEETKLPRIRVGAPVRIRLMGTGEVLTGHVESIAAGIEDRDRAE 240 Query: 241 GASLLANVNPTFSWVRLAQRIPVRIALDHLPDRIALVAGRSATVEIMD 288 GASLLANV PTF+WVRLAQR+PVRIALD R LVAGRSATVE+++ Sbjct: 241 GASLLANVTPTFNWVRLAQRVPVRIALDDTSRRSELVAGRSATVEVLN 288 >ref|YP_002363607.1| RND family efflux transporter MFP subunit [Methylocella silvestris BL2] gb|ACK52245.1| efflux transporter, RND family, MFP subunit [Methylocella silvestris BL2] Length = 314 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/282 (67%), Positives = 222/282 (78%) Query: 5 FAWLGRVALTAIAVIAALAVARALWVYYMEAPWTRDGRVRADIVQVAPDVSGFVTDVLVK 64 F+WLGR A+TA+ V LW YY++APWTRDGRVRADIV VAPDVSG VTDVLV+ Sbjct: 5 FSWLGRFAITALMVAVGALFGSELWAYYVDAPWTRDGRVRADIVAVAPDVSGLVTDVLVQ 64 Query: 65 DNQPVHRGDILFRIDRARFALALKQADAAVAGHRATLDQADADLKRYSSLTTDAVSQQKQ 124 DN+ V RGD+LFRIDR RFALAL+QA A G A L +A++DL RY L+ VSQQK Sbjct: 65 DNEIVRRGDLLFRIDRERFALALQQAQAVAEGRLAALTEANSDLARYKQLSDKVVSQQKF 124 Query: 125 EQVLATQLQAKAAYDQAVADRAVAQLNLDRSEVHASVNGTITNMDLRPGAYVTAGKGVMA 184 EQVLATQ A AAY +AVA R VA+LNLDRS+V ASVNG +TN DLRPGAYV+AGKGV A Sbjct: 125 EQVLATQQLADAAYKEAVAQRDVAKLNLDRSDVRASVNGAVTNFDLRPGAYVSAGKGVFA 184 Query: 185 LVDTDTLHVEGYFEETKLARIRVGDKAQIRLMGEPVRLTGHVESIAAGIEDRDRAAGASL 244 LVD+D+LH+EGYFEETKL RI GD+ +RLMGE LTG VESIA IEDR+R+AGASL Sbjct: 185 LVDSDSLHIEGYFEETKLPRIHAGDRVSVRLMGESRMLTGRVESIAGAIEDRERSAGASL 244 Query: 245 LANVNPTFSWVRLAQRIPVRIALDHLPDRIALVAGRSATVEI 286 +ANVNPTFSWVRLAQR+PVRIALD P + L+ GR+ATV + Sbjct: 245 VANVNPTFSWVRLAQRVPVRIALDETPQEVRLLPGRTATVSV 286 >ref|YP_001922959.1| RND family efflux transporter MFP subunit [Methylobacterium populi BJ001] gb|ACB78424.1| efflux transporter, RND family, MFP subunit [Methylobacterium populi BJ001] Length = 315 Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 187/277 (67%), Positives = 219/277 (79%) Query: 10 RVALTAIAVIAALAVARALWVYYMEAPWTRDGRVRADIVQVAPDVSGFVTDVLVKDNQPV 69 R+ +T V AA+ V ALW YYMEAPWTRDGRVRAD+VQVAPDVSG VT+VL+ DNQ V Sbjct: 10 RLLVTLGMVAAAIVVGLALWDYYMEAPWTRDGRVRADVVQVAPDVSGLVTEVLIADNQVV 69 Query: 70 HRGDILFRIDRARFALALKQADAAVAGHRATLDQADADLKRYSSLTTDAVSQQKQEQVLA 129 +GD+LFRID RFALAL+QA+A V G +A+ QA AD RY L+ A SQQ+ E A Sbjct: 70 KQGDVLFRIDPDRFALALRQAEAVVEGKKASAVQAAADYARYLKLSDAAASQQRVEAAQA 129 Query: 130 TQLQAKAAYDQAVADRAVAQLNLDRSEVHASVNGTITNMDLRPGAYVTAGKGVMALVDTD 189 L+AKAAY QA+ADR +A+LNLDRS V ASVNG ITNM LRPG YV+ G GVMAL+D+D Sbjct: 130 ADLEAKAAYGQAMADRDLAKLNLDRSAVKASVNGRITNMGLRPGTYVSTGHGVMALIDSD 189 Query: 190 TLHVEGYFEETKLARIRVGDKAQIRLMGEPVRLTGHVESIAAGIEDRDRAAGASLLANVN 249 TL VEGYFEETKL RI VGD+A IRLMGE L+GHVES A GIEDR+R AG++LLA+VN Sbjct: 190 TLRVEGYFEETKLPRIHVGDRASIRLMGEKETLSGHVESFAGGIEDRERTAGSNLLASVN 249 Query: 250 PTFSWVRLAQRIPVRIALDHLPDRIALVAGRSATVEI 286 PTF+WVRLAQRIPVRI LD +PD+ LVAGR+ATV + Sbjct: 250 PTFAWVRLAQRIPVRIKLDGVPDQTRLVAGRTATVAV 286 >ref|YP_003069921.1| efflux pump component, secretion protein HlyD family [Methylobacterium extorquens DM4] emb|CAX26094.1| putative efflux pump component, secretion protein HlyD family [Methylobacterium extorquens DM4] Length = 315 Score = 365 bits (936), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 186/277 (67%), Positives = 217/277 (78%) Query: 10 RVALTAIAVIAALAVARALWVYYMEAPWTRDGRVRADIVQVAPDVSGFVTDVLVKDNQPV 69 R+ +T V AA+ V ALW YYMEAPWTRDGRVRAD+VQVAPDVSG VT+VL+ DNQ V Sbjct: 10 RLLVTLGMVAAAIVVGLALWDYYMEAPWTRDGRVRADVVQVAPDVSGLVTEVLIADNQVV 69 Query: 70 HRGDILFRIDRARFALALKQADAAVAGHRATLDQADADLKRYSSLTTDAVSQQKQEQVLA 129 RGD+LFRID RFALAL+QA+A V G +A+ QA AD RY L+ A SQQ+ E A Sbjct: 70 KRGDVLFRIDPDRFALALRQAEALVEGKKASAVQAAADYARYLKLSDAAASQQRVEAAQA 129 Query: 130 TQLQAKAAYDQAVADRAVAQLNLDRSEVHASVNGTITNMDLRPGAYVTAGKGVMALVDTD 189 L+AKAAY QA ADR +A+LNLDRS V ASVNG ITNM LRPG+YV+ G GVMAL+D+D Sbjct: 130 ADLEAKAAYGQATADRDLAKLNLDRSAVKASVNGRITNMGLRPGSYVSTGHGVMALIDSD 189 Query: 190 TLHVEGYFEETKLARIRVGDKAQIRLMGEPVRLTGHVESIAAGIEDRDRAAGASLLANVN 249 TL VEGYFEETKL RI VG++A IRLMGE LTGHVES A GIEDR+R AG++LLA+VN Sbjct: 190 TLRVEGYFEETKLPRIHVGNRASIRLMGETGTLTGHVESFAGGIEDRERTAGSNLLASVN 249 Query: 250 PTFSWVRLAQRIPVRIALDHLPDRIALVAGRSATVEI 286 PTF+WVRLAQRIPVRI LD +PD L+ GR+ATV + Sbjct: 250 PTFAWVRLAQRIPVRIKLDGVPDETRLLVGRTATVAV 286