BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0048.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772459.1| hypothetical protein bll5819 [Bradyrhizobium ja... 268 3e-70 ref|ZP_08629836.1| hypothetical protein CSIRO_2931 [Bradyrhizobi... 133 2e-29 ref|ZP_08629346.1| hypothetical protein CSIRO_2434 [Bradyrhizobi... 130 1e-28 ref|YP_001242942.1| hypothetical protein BBta_7154 [Bradyrhizobi... 126 2e-27 ref|NP_774564.1| hypothetical protein bll7924 [Bradyrhizobium ja... 124 1e-26 >ref|NP_772459.1| hypothetical protein bll5819 [Bradyrhizobium japonicum USDA 110] dbj|BAC51084.1| bll5819 [Bradyrhizobium japonicum USDA 110] Length = 218 Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 134/218 (61%), Positives = 164/218 (75%), Gaps = 1/218 (0%) Query: 1 VRIHLIVQLLASFVLALATLAPGQVQAQTEPAQPAVDNIQLKFIGRVVAATGSVTIEHPN 60 +R H L+ VLALA +P VQAQ++ + AV + K IG+VVAA GSV IEH Sbjct: 1 MRTHAATVLVTGIVLALAASSPRPVQAQSDSPRRAVLDSSSKPIGKVVAAEGSVIIEHVG 60 Query: 61 AVVVQAGLPGKLPQAQVGDPVYLGDVVQTGADGRVGINFSDGTSFNLSSNAKMAMTEFVY 120 AV+VQA +PG+ Q ++GDPVYLGDVV+T AD RVGINF DGTSFNLSSNA+M + E+VY Sbjct: 61 AVIVQAKVPGESIQTKIGDPVYLGDVVRTDADSRVGINFVDGTSFNLSSNARMKLDEYVY 120 Query: 121 DPNGKSNSTLLKLTNGTFTFVAGNIAKTGDMKIDTPVATMGIRGTTPRIEISDDGTVKFA 180 +P GKSNST LT GTF FVAG +AKTGDM+I+TPVATMG+RGTTP +EISDDGT +F+ Sbjct: 121 EPAGKSNSTSFNLTKGTFVFVAGQVAKTGDMRIETPVATMGVRGTTPHVEISDDGTTRFS 180 Query: 181 TLVEEGKSK-VRKVGTRKPQQPEQNTLHKFNPNICRGC 217 TL+EEGK+K ++K G +PEQ HK N NICRGC Sbjct: 181 TLIEEGKNKYLKKSGGTGAPRPEQRAEHKLNLNICRGC 218 >ref|ZP_08629836.1| hypothetical protein CSIRO_2931 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07479.1| hypothetical protein CSIRO_2931 [Bradyrhizobiaceae bacterium SG-6C] Length = 1860 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/144 (47%), Positives = 98/144 (68%), Gaps = 11/144 (7%) Query: 42 KFIGRVVAATGSVTIEHPNAVVVQAGLPGKLPQAQVGDPVYLGDVVQTGADGRVGINFSD 101 + IG V+ +GS A ++ G+ +L +GD + GDV+QTG+D +G+ F D Sbjct: 118 QVIGNVLKLSGS-------ASAIRNGVSIEL---HIGDAIQKGDVIQTGSDSSIGMTFVD 167 Query: 102 GTSFNLSSNAKMAMTEFVYDPNGKSNSTLLKLTNGTFTFVAGNIAKTGDMKIDTPVATMG 161 G++F ++SNA+M M E +YDPNG SNS+L+ L GT TFVAG AK G+M+++TPVATMG Sbjct: 168 GSAFGMTSNARMVMNEMIYDPNGSSNSSLISLVQGTITFVAGQTAKNGNMRVETPVATMG 227 Query: 162 IRGTTPRIEI-SDDGTVKFATLVE 184 IRGT +EI ++DG KF+ LVE Sbjct: 228 IRGTAVLVEIGANDGPTKFSVLVE 251 >ref|ZP_08629346.1| hypothetical protein CSIRO_2434 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07839.1| hypothetical protein CSIRO_2434 [Bradyrhizobiaceae bacterium SG-6C] Length = 832 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/172 (47%), Positives = 110/172 (63%), Gaps = 9/172 (5%) Query: 18 ATLAPGQVQAQTEPAQPAVDNIQLKFIGRVVAATGSVTIEHPNAVVVQAGLPGKLPQAQV 77 AT++ V+A T Q A Q I V A G+V AVV + G+P +L Q Sbjct: 59 ATISGRIVEAMTARVQYA----QADQIAGAVPAVGNVAKISGMAVVTRNGVPVELKQ--- 111 Query: 78 GDPVYLGDVVQTGADGRVGINFSDGTSFNLSSNAKMAMTEFVYDPNGKSNSTLLKLTNGT 137 GD + GDVVQTGA+ +GI+F DGT+ L+SNA++ + E YDPNG SNS+L+ L GT Sbjct: 112 GDRLLKGDVVQTGAETTLGISFVDGTALGLASNARIVLDEMTYDPNGSSNSSLMSLIQGT 171 Query: 138 FTFVAGNIAKTGDMKIDTPVATMGIRGTTPRIEI-SDDGTVKFATLVE-EGK 187 T VAG+ AK G+M+++TPVATMGIRGT +EI +D+G KF+ L E +GK Sbjct: 172 ITLVAGHTAKYGNMRVETPVATMGIRGTAIMVEIAADNGPSKFSVLREPDGK 223 >ref|YP_001242942.1| hypothetical protein BBta_7154 [Bradyrhizobium sp. BTAi1] gb|ABQ39036.1| hypothetical protein BBta_7154 [Bradyrhizobium sp. BTAi1] Length = 2039 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/165 (47%), Positives = 101/165 (61%), Gaps = 14/165 (8%) Query: 45 GRVVAATGSVTIEHPNAVVVQAGLPGKLPQAQVGDPVYLGDVVQTGADGRVGINFSDGTS 104 G+V+ G VT A ++ G+ L Q GD V GDVVQ+G+D +GI F DGT Sbjct: 113 GKVI---GHVTKLQGTATAIRNGVSIILHQ---GDNVEKGDVVQSGSDSTLGITFIDGTV 166 Query: 105 FNLSSNAKMAMTEFVYDPNGKSNSTLLKLTNGTFTFVAGNIAKTGDMKIDTPVATMGIRG 164 F LSSNA+M + E VYDPNG +NS+L+ L GT +FVAG AK GDMK+DTPVATMGIRG Sbjct: 167 FGLSSNARMVLNEMVYDPNGSNNSSLISLVAGTISFVAGETAKHGDMKVDTPVATMGIRG 226 Query: 165 TTPRIEIS----DDGTV---KFATLVE-EGKSKVRKVGTRKPQQP 201 T +EI GT+ KF LVE +G++ + + QP Sbjct: 227 TAVLVEIDFTVPGQGTLPDAKFQVLVEPDGRTGSYVLFDKTTLQP 271 >ref|NP_774564.1| hypothetical protein bll7924 [Bradyrhizobium japonicum USDA 110] dbj|BAC53189.1| bll7924 [Bradyrhizobium japonicum USDA 110] Length = 2734 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 63/94 (67%), Positives = 69/94 (73%) Query: 78 GDPVYLGDVVQTGADGRVGINFSDGTSFNLSSNAKMAMTEFVYDPNGKSNSTLLKLTNGT 137 GD V GDVV TGAD +GI F DGT F LSSNA+M + E VYDPNG +NS+LL L GT Sbjct: 108 GDNVEKGDVVSTGADSTLGITFIDGTVFGLSSNARMVLNEMVYDPNGSNNSSLLSLVAGT 167 Query: 138 FTFVAGNIAKTGDMKIDTPVATMGIRGTTPRIEI 171 TFVAG AK GDMKIDTPVATMGIRGT +I Sbjct: 168 ITFVAGETAKHGDMKIDTPVATMGIRGTAVLTQI 201