BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0033.p (332 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_576077.1| fimbrial assembly [Nitrobacter hamburgensis X14... 147 3e-33 ref|YP_001203436.1| putative general secretion pathway protein L... 139 6e-31 ref|YP_001238671.1| putative general secretion pathway protein L... 118 1e-24 ref|YP_532866.1| fimbrial assembly [Rhodopseudomonas palustris B... 115 1e-23 ref|YP_001237431.1| putative general secretion pathway protein L... 100 6e-19 >ref|YP_576077.1| fimbrial assembly [Nitrobacter hamburgensis X14] gb|ABE61617.1| Fimbrial assembly [Nitrobacter hamburgensis X14] Length = 352 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 137/227 (60%), Gaps = 9/227 (3%) Query: 2 LAEARQWFEQWIGAVATAVDGVAGRFMRRRSIELDENGDGTFTAHLAVSKDGSPSTPVSF 61 +AEA++ F WI AVA A+ A R M +R I L ++ G FTA + K G+ +F Sbjct: 1 MAEAKELFAFWIDAVAAALRMAAARAMPQRRIPLKQSEAGDFTARVVSKKKGAALPQATF 60 Query: 62 RLDHDAPQPPLPADWKIAFDGSRIEVRLRPDQIVSRVLDFPSQASEFLDGMIRAQVDRLT 121 RL P L +W+ A GSR+E+ +R DQ++ R +DFP QA++FLDGM+RAQ+DRLT Sbjct: 61 RLGQ---APALTEEWRAALRGSRLEIHMRADQVLFRTIDFPKQATDFLDGMVRAQIDRLT 117 Query: 122 PWSAADAVFGWSSPQPIANDRIEVAFGATAATKVDPLIRMARVLGAASVAVSAPAVGGDG 181 PW+A +AV+G ++P P AN+R+ + AT+ + PL+ +A LGAASV + Sbjct: 118 PWTADNAVYGLTAPVPAANERVALTLAATSRQAIQPLLDLATDLGAASVEGLIEPPDAEN 177 Query: 182 VAQQVTLLDKSLRGLAGPS--VTRLLRVGL----VSTAAAAAXAEHL 222 A+ + + ++ L G AG S + RLLR+ L V+TA A + +L Sbjct: 178 AARPIRIFEQKLSGPAGLSTDMPRLLRLTLLGAGVTTAVMLAVSTYL 224 >ref|YP_001203436.1| putative general secretion pathway protein L [Bradyrhizobium sp. ORS 278] emb|CAL75199.1| putative General secretion pathway protein L [Bradyrhizobium sp. ORS 278] Length = 361 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 92/214 (42%), Positives = 130/214 (60%), Gaps = 10/214 (4%) Query: 5 ARQWFEQWIGAVA-TAVDGVAGRFMRRRSIELDENGDGTFTAHLAVSKDGSPSTP-VSFR 62 AR+ +IG+VA VDG+ GR + I+L E F + +++ G + P Sbjct: 4 ARRELAAFIGSVAAVIVDGI-GRLDLKPPIQLVETDRNVFVLRM-IARAGRSAPPDCQLH 61 Query: 63 L-DHDAPQPPLPADWKIAFDGSRIEVRLRPDQIVSRVLDFPSQASEFLDGMIRAQVDRLT 121 L D +A P LP +W+ A GSRIE+ LRPD+ +SR LD P +A EFLD M+R+Q+DRLT Sbjct: 62 LPDVEAISPALPENWRAALRGSRIEIMLRPDRFLSRPLDLPRRAVEFLDAMVRSQLDRLT 121 Query: 122 PWSAADAVFGWSSPQPIANDRIEVAFGATAATKVDPLIRMARVLGAASV---AVSAPAVG 178 PW+A +AVFG ++P ++ DRI+ A T++DPLIR+A AASV A ++PA+ Sbjct: 122 PWTAQEAVFGNTAPVTLSGDRIQTIVIAAPRTRLDPLIRLAESWHAASVVLFAAASPALA 181 Query: 179 GDGVAQQVT-LLDKSLRGLAGPS-VTRLLRVGLV 210 VAQ T L+++ LRG V+RLL GLV Sbjct: 182 SQPVAQDATRLIEQQLRGSRNVGRVSRLLTAGLV 215 >ref|YP_001238671.1| putative general secretion pathway protein L [Bradyrhizobium sp. BTAi1] gb|ABQ34765.1| putative General secretion pathway protein L [Bradyrhizobium sp. BTAi1] Length = 365 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 113/226 (50%), Gaps = 11/226 (4%) Query: 1 MLAEARQWFEQWIGAVATAVDGVAGRFMRRRSIELDENGDGTFTAHLAVSKDGSPSTPVS 60 M R WIG+VAT V GR + ++L E F + +++ G P Sbjct: 1 MATRVRHELAAWIGSVATITVAVIGRLHLKPPVQLIETERNVFVLRM-IARPGRSILPDC 59 Query: 61 FRLDHDAPQ--PPLPADWKIAFDGSRIEVRLRPDQIVSRVLDFPSQASEFLDGMIRAQVD 118 L D + P L W+ G +IE+ LRPD+ + + LD P +A EFLD MIR+Q+D Sbjct: 60 RVLLSDGERSVPVLSTSWQNLLRGCQIEIVLRPDRFLWKPLDLPRRAVEFLDAMIRSQLD 119 Query: 119 RLTPWSAADAVFGWSSPQPIANDRIEVAFGATAATKVDPLIRMAR-------VLGAASVA 171 RLTPW+A +AVFG ++P I+ DRI A T+ +PLIR+A VL AA A Sbjct: 120 RLTPWTAQEAVFGSAAPVEISGDRIRTMVIAAPRTRFEPLIRLAESWRAGSVVLFAAPEA 179 Query: 172 VSAPAVGGDGVAQQVTLLDKSLRG-LAGPSVTRLLRVGLVSTAAAA 216 V G G L ++ LRG L V+R+L L A AA Sbjct: 180 VQTADAGELGARSATKLTEQHLRGSLDVGRVSRMLTAVLTVAAIAA 225 >ref|YP_532866.1| fimbrial assembly [Rhodopseudomonas palustris BisB18] gb|ABD88547.1| Fimbrial assembly [Rhodopseudomonas palustris BisB18] Length = 356 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 111/222 (50%), Gaps = 8/222 (3%) Query: 9 FEQWIGAVATAVDGVAGRFMRRRSIELDENGDGTFTAHL-AVSKDGSPSTPVSFRLDHDA 67 F WI VA V + R IE+ E+ G FT L A G P Sbjct: 11 FSLWIETVARTVSAPLEKLKSVRRIEVVEDDAGIFTMQLPAKPGKGGDMPPCRIAAAEGQ 70 Query: 68 PQPPLPADWKIAFDGSRIEVRLRPDQIVSRVLDFPSQASEFLDGMIRAQVDRLTPWSAAD 127 L +W G RIEV LRP + V R LD PS+A EFL+G+IRAQ+DRLTPW+A++ Sbjct: 71 ICRSLSPEWAAMIRGGRIEVLLRPSRFVFRQLDLPSRAVEFLNGIIRAQIDRLTPWTASE 130 Query: 128 AVFGWSSPQPIANDRIEVAFGATAATKVDPLIRMARVLGAASVAVSAPAVGGDGVAQQVT 187 AV+ W+ P+ +A DRIE+ AT V L + GAA V VS G A++V Sbjct: 131 AVYHWTPPRGVAGDRIELTIVATGRAAVVSLAQEFSDCGAAIVEVSTAPFG----AERVM 186 Query: 188 LLDKSLRGLAGPSVTRLLRVGLVSTAAAAAXAEHLSRRVAAI 229 + ++ G G LR+ LV+ A AA LSR VA + Sbjct: 187 VHNQRAGGRTGFG---RLRLALVAGLATAAVLAVLSRGVAGL 225 >ref|YP_001237431.1| putative general secretion pathway protein L, GspL [Bradyrhizobium sp. BTAi1] gb|ABQ33525.1| putative General secretion pathway protein L, GspL [Bradyrhizobium sp. BTAi1] Length = 357 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 105/215 (48%), Gaps = 5/215 (2%) Query: 6 RQWFEQWIGAVATAVDGVAGRFMRRRSIELDENGDGTFTAHLAVSKDGSPSTPVSFRLDH 65 Q W +VA AV+ VA R + R + ++ + L G P+ P + Sbjct: 8 EQGLTAWTASVALAVEAVADRQLSRGRVVVEYHRLDHVVLTLQAPSRGKPALPPAAINLA 67 Query: 66 DAPQPPLPA-DWKIAFDGSRIEVRLRPDQIVSRVLDFPSQASEFLDGMIRAQVDRLTPWS 124 A P + +W A G +EV + ++ R LDFP QA FLDGMIR Q+ RLTPW+ Sbjct: 68 AAAPRPALSPEWLRALRGCALEVHVAAGNLLVRPLDFPKQAEPFLDGMIRTQIARLTPWT 127 Query: 125 AADAVFGWSSPQPIANDRIEVAFGATAATKVDPLIRMARVLGAASVAVSAPAVGGDGVAQ 184 VFG+ + ANDRI V A + PL+ A +GAA +AV A GDG Sbjct: 128 IDQVVFGFGTAPAAANDRIAVTLIAAPRALIQPLLAFAAEIGAAKIAVVAEDDAGDGAPI 187 Query: 185 QVTLLDKSLRGL--AGPSVTRLLRVGLVSTAAAAA 217 Q+ SLR G + R+L++G +S AAA A Sbjct: 188 QI--YKASLRSALGGGRDLGRVLKIGWLSVAAATA 220