BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0027.p (403 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_576083.1| type II secretion system protein [Nitrobacter h... 602 e-170 ref|YP_001237425.1| general secretion pathway protein F [Bradyrh... 567 e-159 ref|YP_001208197.1| general secretion pathway protein F [Bradyrh... 562 e-158 ref|YP_001203430.1| putative general secretion pathway protein F... 504 e-140 ref|YP_001238665.1| putative general secretion pathway protein F... 502 e-140 >ref|YP_576083.1| type II secretion system protein [Nitrobacter hamburgensis X14] gb|ABE61623.1| type II secretion system protein [Nitrobacter hamburgensis X14] Length = 403 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 311/403 (77%), Positives = 349/403 (86%) Query: 1 VPNYRYRALTQAGEIVNGTISAPTAAEVARRIEYLKLLPIETTEDKRASGAAGSRSLFGG 60 +PN+RYRALTQ GEIV+GT+SAPTAAEVA RIEYL+LLPIETTE+KR+ A+ S F Sbjct: 1 MPNFRYRALTQNGEIVHGTLSAPTAAEVATRIEYLRLLPIETTEEKRSVSASSGFSPFSR 60 Query: 61 PSAAEVTTFTRDLALLLKAGARLDDALELLSGDADVGRMRPVVAKIRAALLTGESFADAV 120 PS AEVTTFTRDLALLLKA ARLDDALELLS DADVGR+RPVV K+RAALL GESFA+AV Sbjct: 61 PSPAEVTTFTRDLALLLKASARLDDALELLSNDADVGRLRPVVGKLRAALLGGESFAEAV 120 Query: 121 ADHPTLFQPMYIALVRVGEISGTLDSVLEMLGTERARSEQMRRKLTDAMQYPAFVLVAAS 180 A HP LF PMY+ALVRVGE+SGTLD VLE+LG ERAR+EQMRRKLTDAMQYP FVLVAA Sbjct: 121 AAHPILFPPMYVALVRVGEVSGTLDQVLELLGAERARAEQMRRKLTDAMQYPLFVLVAAG 180 Query: 181 GVMLFFLLFVLPQFSTVLGDFGGKSDTALASFIAVSDFLRANATAASLISAATIALAWWL 240 GVMLFF+LFVLPQFS VL DFGGKSD+AL F+ +SDF+RANATA L +A I W+ Sbjct: 181 GVMLFFILFVLPQFSVVLQDFGGKSDSALRVFLRLSDFMRANATALLLAAACLIGAIWFA 240 Query: 241 LRQARVRAALVNAISRVPGISSAFQFYRASLFCRNLGVLLGSGVNLTAALRILVDIMSVT 300 R+ V+AA + A++R+PGI+ FQFYR SLFCRNLGVLLGSGV+LT ALRIL+DIM+V Sbjct: 241 WRRPAVKAAGIGAVARLPGIAGIFQFYRTSLFCRNLGVLLGSGVSLTTALRILIDIMAVA 300 Query: 301 GSEANWTAAADRVRHGGKLSEALAVADSLPPMAVRMLRLGEETGQLPVLAGRVAEFYEAK 360 G+ WTAAA+RVRHGGKLSEAL+ + SLPPMAVRMLRLGEE GQLPVLAGRVAEFYEAK Sbjct: 301 GNAEVWTAAAERVRHGGKLSEALSTSSSLPPMAVRMLRLGEEIGQLPVLAGRVAEFYEAK 360 Query: 361 LQRSLDRVVGIVGPLAIITISTVVGGLIVSVMTALLSVTQLVG 403 LQRSLDRVV I+GPLAI+ ISTVVGGLIVSVMTALLSVTQLVG Sbjct: 361 LQRSLDRVVSIIGPLAIVAISTVVGGLIVSVMTALLSVTQLVG 403 >ref|YP_001237425.1| general secretion pathway protein F [Bradyrhizobium sp. BTAi1] gb|ABQ33519.1| General secretion pathway protein F [Bradyrhizobium sp. BTAi1] Length = 403 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/403 (70%), Positives = 331/403 (82%) Query: 1 VPNYRYRALTQAGEIVNGTISAPTAAEVARRIEYLKLLPIETTEDKRASGAAGSRSLFGG 60 +P+YRYRALTQ+GEIV G++ AP+ +EV RRI YL+LLPIET E+K + A S FG Sbjct: 1 MPSYRYRALTQSGEIVVGSLVAPSRSEVERRISYLQLLPIETIEEKTSGSGAASGFAFGA 60 Query: 61 PSAAEVTTFTRDLALLLKAGARLDDALELLSGDADVGRMRPVVAKIRAALLTGESFADAV 120 PSAAEVTTFTRDLALLLKAGARLDDALELLSGD++VGR+RPVVA++R A++ GESFADA Sbjct: 61 PSAAEVTTFTRDLALLLKAGARLDDALELLSGDSEVGRLRPVVARLRTAIMAGESFADAA 120 Query: 121 ADHPTLFQPMYIALVRVGEISGTLDSVLEMLGTERARSEQMRRKLTDAMQYPAFVLVAAS 180 A P LF PMY+AL+RVGE SGTLD VL L ER RSE RRKLTDAMQYPAFV +AA Sbjct: 121 AAQPRLFSPMYVALMRVGEASGTLDHVLTALAGERERSEATRRKLTDAMQYPAFVFLAAI 180 Query: 181 GVMLFFLLFVLPQFSTVLGDFGGKSDTALASFIAVSDFLRANATAASLISAATIALAWWL 240 GVMLFFL+ VLP FS VL DFGG++DTAL F+++SD +RANA A +L A IA WWL Sbjct: 181 GVMLFFLVAVLPNFSAVLRDFGGRADTALGFFMSLSDIVRANAAAITLGCAMLIAAVWWL 240 Query: 241 LRQARVRAALVNAISRVPGISSAFQFYRASLFCRNLGVLLGSGVNLTAALRILVDIMSVT 300 LRQ VRAAL +A++ +PGI FYR SLFCRNLG+LLG GV L+AALRILVD+M+VT Sbjct: 241 LRQPAVRAALTSALAVIPGIGDILMFYRTSLFCRNLGLLLGCGVTLSAALRILVDVMAVT 300 Query: 301 GSEANWTAAADRVRHGGKLSEALAVADSLPPMAVRMLRLGEETGQLPVLAGRVAEFYEAK 360 S A W+AAADRVRHGGKLS+AL+ + LPPMA+RMLRLGEETGQLP L+ R+AEFYE+K Sbjct: 301 SSRAPWSAAADRVRHGGKLSQALSADNMLPPMALRMLRLGEETGQLPTLSTRIAEFYESK 360 Query: 361 LQRSLDRVVGIVGPLAIITISTVVGGLIVSVMTALLSVTQLVG 403 LQR LDRVVGIVGP AI+ IS VVGGLIVS+MTALLSVTQLVG Sbjct: 361 LQRGLDRVVGIVGPAAILLISVVVGGLIVSIMTALLSVTQLVG 403 >ref|YP_001208197.1| general secretion pathway protein F [Bradyrhizobium sp. ORS 278] emb|CAL79982.1| General secretion pathway protein F [Bradyrhizobium sp. ORS 278] Length = 402 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 282/403 (69%), Positives = 331/403 (82%), Gaps = 1/403 (0%) Query: 1 VPNYRYRALTQAGEIVNGTISAPTAAEVARRIEYLKLLPIETTEDKRASGAAGSRSLFGG 60 +P+YRYRALTQ+GEIV G++ AP+ EV RRI YL+LLPIET E+K + ++ S FGG Sbjct: 1 MPSYRYRALTQSGEIVVGSLDAPSRGEVERRISYLQLLPIETVEEKARTASSAGLS-FGG 59 Query: 61 PSAAEVTTFTRDLALLLKAGARLDDALELLSGDADVGRMRPVVAKIRAALLTGESFADAV 120 PSA +VTTFTRDLALLLKAGARLDDAL+LLS D+D+GR+RPVVA++RAA+++GESFADA Sbjct: 60 PSAVDVTTFTRDLALLLKAGARLDDALDLLSNDSDIGRLRPVVARLRAAIMSGESFADAA 119 Query: 121 ADHPTLFQPMYIALVRVGEISGTLDSVLEMLGTERARSEQMRRKLTDAMQYPAFVLVAAS 180 A P LF PMY+AL+RVGE SGTLD VL L ER RSE RRKLTDAMQYPAFV +AA Sbjct: 120 AAQPLLFSPMYVALMRVGEASGTLDQVLTALAGERERSEATRRKLTDAMQYPAFVFLAAI 179 Query: 181 GVMLFFLLFVLPQFSTVLGDFGGKSDTALASFIAVSDFLRANATAASLISAATIALAWWL 240 GVMLFFL+ VLP FS VL DFGG++DTAL F+++SD LR NA +L AA + WWL Sbjct: 180 GVMLFFLVAVLPNFSAVLRDFGGRADTALGFFMSLSDILRDNAAVITLGCAALLVAGWWL 239 Query: 241 LRQARVRAALVNAISRVPGISSAFQFYRASLFCRNLGVLLGSGVNLTAALRILVDIMSVT 300 LRQA VRAAL + ++ +PGI FYR SLFCRNLG+LLG GV L+AALRILVD+M+VT Sbjct: 240 LRQANVRAALTSGLAVLPGIGGILTFYRTSLFCRNLGLLLGCGVTLSAALRILVDVMAVT 299 Query: 301 GSEANWTAAADRVRHGGKLSEALAVADSLPPMAVRMLRLGEETGQLPVLAGRVAEFYEAK 360 S A W+AAADRVRHGGKLS+AL+ D LPPMA+RMLRLGEETGQLP L+ R+AEFYEAK Sbjct: 300 SSRAPWSAAADRVRHGGKLSQALSADDMLPPMALRMLRLGEETGQLPTLSTRIAEFYEAK 359 Query: 361 LQRSLDRVVGIVGPLAIITISTVVGGLIVSVMTALLSVTQLVG 403 LQR+LDRVVGIVGP AI+ IS VVGGLIVS+MTALLSVTQLVG Sbjct: 360 LQRALDRVVGIVGPAAILLISVVVGGLIVSIMTALLSVTQLVG 402 >ref|YP_001203430.1| putative general secretion pathway protein F [Bradyrhizobium sp. ORS 278] emb|CAL75193.1| putative general secretion pathway protein F [Bradyrhizobium sp. ORS 278] Length = 389 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 262/391 (67%), Positives = 317/391 (81%), Gaps = 5/391 (1%) Query: 16 VNGTISAPTAAEVARRIEYLKLLPIETTEDKRASGAAGSRSL---FGGPSAAEVTTFTRD 72 ++GTISA TA +V RIEYL+LLPIET E+K G++ R + GGP VTTFTRD Sbjct: 1 MHGTISAATAKDVIDRIEYLRLLPIETIEEK--IGSSVRRDMAAWLGGPGPGGVTTFTRD 58 Query: 73 LALLLKAGARLDDALELLSGDADVGRMRPVVAKIRAALLTGESFADAVADHPTLFQPMYI 132 LALLLKAGARL+DALELL+GDAD+GR+R +V+++R+++L GESFADA+A HPT F PMY+ Sbjct: 59 LALLLKAGARLEDALELLAGDADIGRLRAIVSRLRSSILAGESFADALAHHPTQFPPMYL 118 Query: 133 ALVRVGEISGTLDSVLEMLGTERARSEQMRRKLTDAMQYPAFVLVAASGVMLFFLLFVLP 192 ALVRVGE SG+LD VL++LG ERAR+E MRRKL DA+QYP FVLVAA VMLFF + VLP Sbjct: 119 ALVRVGEASGSLDHVLDVLGAERARAEAMRRKLGDALQYPLFVLVAAFLVMLFFFIVVLP 178 Query: 193 QFSTVLGDFGGKSDTALASFIAVSDFLRANATAASLISAATIALAWWLLRQARVRAALVN 252 QFSTVL DFG ++D A+ +F+ +S+FLR+N A +L+ + +A LL +A +R A++ Sbjct: 179 QFSTVLRDFGARTDAAITTFLDISEFLRSNGAAIALLGSGIVAAGILLLGRASIRGAVIA 238 Query: 253 AISRVPGISSAFQFYRASLFCRNLGVLLGSGVNLTAALRILVDIMSVTGSEANWTAAADR 312 + R+PG+++ F YR S+FCRNL +LLGSG+ LTA LRILVDIMSVTG A W AAADR Sbjct: 239 RLCRLPGLAAVFGSYRTSVFCRNLAILLGSGLTLTATLRILVDIMSVTGDGAVWRAAADR 298 Query: 313 VRHGGKLSEALAVADSLPPMAVRMLRLGEETGQLPVLAGRVAEFYEAKLQRSLDRVVGIV 372 VR GGKLSEAL AD LP MA RM+R+GEETGQLPVLAGR+AEFYEAKLQRSLDR+VGIV Sbjct: 299 VRQGGKLSEALTSADILPAMATRMIRIGEETGQLPVLAGRIAEFYEAKLQRSLDRIVGIV 358 Query: 373 GPLAIITISTVVGGLIVSVMTALLSVTQLVG 403 GP AII ISTVVGGLIVSVMTALLSVTQLVG Sbjct: 359 GPAAIILISTVVGGLIVSVMTALLSVTQLVG 389 >ref|YP_001238665.1| putative general secretion pathway protein F [Bradyrhizobium sp. BTAi1] gb|ABQ34759.1| putative general secretion pathway protein F [Bradyrhizobium sp. BTAi1] Length = 389 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 261/391 (66%), Positives = 315/391 (80%), Gaps = 5/391 (1%) Query: 16 VNGTISAPTAAEVARRIEYLKLLPIETTEDKRASGAAGSRSL---FGGPSAAEVTTFTRD 72 ++GTISA TA +V RIEYL+LLPIET E+K AS +R + FGGP+ A+VTTFTRD Sbjct: 1 MHGTISAATAKDVIDRIEYLRLLPIETVEEKTASPV--TRDMLAWFGGPTQADVTTFTRD 58 Query: 73 LALLLKAGARLDDALELLSGDADVGRMRPVVAKIRAALLTGESFADAVADHPTLFQPMYI 132 LALLLKAGARL+D+LELL+GDAD+GR+RP+V ++R+++L GES ADA+A HP F MY+ Sbjct: 59 LALLLKAGARLEDSLELLAGDADIGRLRPIVNRLRSSILAGESLADALAHHPLQFPAMYL 118 Query: 133 ALVRVGEISGTLDSVLEMLGTERARSEQMRRKLTDAMQYPAFVLVAASGVMLFFLLFVLP 192 ALVRVGE SG+LD VLE+LG ERAR++ MRRKL+DAMQYP FVL AA+ VMLFF L VLP Sbjct: 119 ALVRVGEASGSLDHVLEVLGAERARADAMRRKLSDAMQYPLFVLAAAALVMLFFFLVVLP 178 Query: 193 QFSTVLGDFGGKSDTALASFIAVSDFLRANATAASLISAATIALAWWLLRQARVRAALVN 252 QFS VL DFG K+DT + +F+ +SDF+R + A + +AA +A L +A VRAAL+ Sbjct: 179 QFSAVLRDFGAKTDTTITTFLDISDFVRGHGAALASAAAAIVAAGGLLFGRAGVRAALIA 238 Query: 253 AISRVPGISSAFQFYRASLFCRNLGVLLGSGVNLTAALRILVDIMSVTGSEANWTAAADR 312 + R+PG++ F YR S+FCRNL +LLGSG+ LTA LRILVDIMS G+ A W AAADR Sbjct: 239 QLCRLPGLAKVFGSYRTSVFCRNLAILLGSGLTLTATLRILVDIMSAIGNGAEWGAAADR 298 Query: 313 VRHGGKLSEALAVADSLPPMAVRMLRLGEETGQLPVLAGRVAEFYEAKLQRSLDRVVGIV 372 VRHGGKLSEALA LP MA RM+R+GEETGQ+PVLAGR+AEFYEAKLQRSLDR+VGIV Sbjct: 299 VRHGGKLSEALAATSILPAMATRMIRIGEETGQVPVLAGRIAEFYEAKLQRSLDRIVGIV 358 Query: 373 GPLAIITISTVVGGLIVSVMTALLSVTQLVG 403 GP AII ISTVVGGLIVSVM+ALLSVTQLVG Sbjct: 359 GPAAIILISTVVGGLIVSVMSALLSVTQLVG 389