BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0025.p (504 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_576084.1| type II secretion system protein E [Nitrobacter... 655 0.0 ref|YP_001237424.1| general secretion pathway protein E [Bradyrh... 632 e-179 ref|YP_001208198.1| general secretion pathway protein E [Bradyrh... 607 e-171 ref|YP_532873.1| type II secretion system protein E [Rhodopseudo... 582 e-164 ref|YP_002361242.1| type II secretion system protein E [Methyloc... 580 e-163 >ref|YP_576084.1| type II secretion system protein E [Nitrobacter hamburgensis X14] gb|ABE61624.1| type II secretion system protein E [Nitrobacter hamburgensis X14] Length = 569 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/468 (73%), Positives = 388/468 (82%), Gaps = 19/468 (4%) Query: 7 VRFVDYLRQNNHLAPVE-------GPAD----RTGQGADVRQLKLWEVTSLSPTEFADEA 55 ++FV++LR++ L + GPA R+ GA KLWE T+LSPTEFADEA Sbjct: 7 LQFVEHLRRSGRLKAADAEQVTSVGPAQDGTLRSAPGAP--HAKLWETTNLSPTEFADEA 64 Query: 56 ARFFALGRLTLQEMTSAEPLVGSFSPRFLRETMVYPCRAADGTTVLAVVDPTDQATLRAA 115 A FF R +LQEM SA PLV +FS RFLRET+V+P A LAV DPTD A RAA Sbjct: 65 ANFFGHPRASLQEMLSATPLVSAFSRRFLRETLVFPYEVATRGIHLAVADPTDLAARRAA 124 Query: 116 QIVLGADIDVKVASSEDVAIALN----NSSSAEEAEAADNAAALPREDDIESLRDLASGA 171 +IVLG DI + +AS ED+A+AL+ + S A A+A A+AL REDD+ESLRDLASGA Sbjct: 125 EIVLGPDISITLASPEDLAVALDQRLVDDSPAAHADAG-GASAL-REDDVESLRDLASGA 182 Query: 172 PVVRAVNDLIEKAVELRASDIHIEPFSAGLMVRLRIDGLLRPVAALSGVLPQAVVSRIKI 231 PVVRAVNDL+EKAVELRASDIHIEPF +GL+VRLRIDG+LRP+ +G LPQAV+SRIKI Sbjct: 183 PVVRAVNDLLEKAVELRASDIHIEPFQSGLVVRLRIDGMLRPITPPAGALPQAVISRIKI 242 Query: 232 IANLNIAERRLPQDGAARLRAGRTDIDIRVAIMPTQHGESCVIRILPKDRGLLVVEKLGF 291 IANLNIAERRLPQDGAARLRAGR DIDIRVAIMPTQHGES VIRILPKDRGLLVVE LGF Sbjct: 243 IANLNIAERRLPQDGAARLRAGRADIDIRVAIMPTQHGESAVIRILPKDRGLLVVENLGF 302 Query: 292 SEPDEAKLRRLLKLPHGMVVITGPTGSGKTTTLATILSILNEPSRKILTIEDPVEYELPG 351 + DE KLRRLLKLPHGM+VITGPTGSGKTTTLATILSILNEP RKILT+EDPVEYE+PG Sbjct: 303 GQADETKLRRLLKLPHGMIVITGPTGSGKTTTLATILSILNEPIRKILTVEDPVEYEIPG 362 Query: 352 VNQSQIKPAIGLTFATALRSFVRQDPDVIMVGEIRDSETAHVAVHAALTGHLVLTTLHTE 411 +NQSQIKPAIGLTFA+ALRSFVRQDPDVIMVGE+RD+ETAHVAVHAALTGHLVLTTLHTE Sbjct: 363 INQSQIKPAIGLTFASALRSFVRQDPDVIMVGEVRDAETAHVAVHAALTGHLVLTTLHTE 422 Query: 412 TAAAAVPRLLDLGVEGYLLRSVLRGVIAQRLVRQLCERCKTARPLATA 459 TAAAA+PRLLDLG++GYLLRS LR VIAQRLVRQLCERCK+ + L A Sbjct: 423 TAAAALPRLLDLGIQGYLLRSTLRAVIAQRLVRQLCERCKSQKTLMDA 470 >ref|YP_001237424.1| general secretion pathway protein E [Bradyrhizobium sp. BTAi1] gb|ABQ33518.1| General secretion pathway protein E (Type II traffic warden ATPase) [Bradyrhizobium sp. BTAi1] Length = 549 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 326/465 (70%), Positives = 375/465 (80%), Gaps = 9/465 (1%) Query: 1 MANDLSVRFVDYLRQNNHLAPVEGPADRTGQGADVRQLKLWEVTSLSPTEFADEAARFFA 60 M+ LS +F YLRQ + R+G+ A QL LW+ LS FA+EA +F Sbjct: 1 MSGTLSTQFQAYLRQRH--------PQRSGEPAGDTQLALWDRFGLSAEAFAEEAVQFTG 52 Query: 61 LGRLTLQEMTSAEPLVGSFSPRFLRETMVYPCRAADGTTVLAVVDPTDQATLRAAQIVLG 120 L R +L+E+ +A P V FS RFLRE + YP R+++G+ A+ DPTDQA RAA++VLG Sbjct: 53 LDRASLRELMAATPAVSEFSDRFLREVLGYPYRSSEGSANFAMADPTDQAVRRAAELVLG 112 Query: 121 ADIDVKVASSEDVAIALNNSSSAEEAEAADNAAALPREDDIESLRDLASGAPVVRAVNDL 180 DI KVAS ED+A+ L+ +A E EA + R+DDIESLRDLASGAPVVRAVNDL Sbjct: 113 PDIIFKVASHEDIAVVLDQRLAAGE-EADISPVQDLRDDDIESLRDLASGAPVVRAVNDL 171 Query: 181 IEKAVELRASDIHIEPFSAGLMVRLRIDGLLRPVAALSGVLPQAVVSRIKIIANLNIAER 240 IEKAVE+RASDIHIEPFS GL+VRLR+DGLLRP+AA +GVLPQAV+SRIKI+A LNIAER Sbjct: 172 IEKAVEMRASDIHIEPFSTGLVVRLRVDGLLRPIAAPAGVLPQAVISRIKIVAGLNIAER 231 Query: 241 RLPQDGAARLRAGRTDIDIRVAIMPTQHGESCVIRILPKDRGLLVVEKLGFSEPDEAKLR 300 RLPQDGAAR+RAGR +ID+RVAIMPTQHGE+ V+RILPKDR LV +LG S+ D+A LR Sbjct: 232 RLPQDGAARIRAGRAEIDVRVAIMPTQHGETAVLRILPKDRSQLVASRLGLSQRDDAALR 291 Query: 301 RLLKLPHGMVVITGPTGSGKTTTLATILSILNEPSRKILTIEDPVEYELPGVNQSQIKPA 360 RL+ LPHGM+VITGPTGSGKTTTLATILS+LN P RKILTIEDPVEYE+PG+NQSQIKPA Sbjct: 292 RLIALPHGMIVITGPTGSGKTTTLATILSMLNTPERKILTIEDPVEYEIPGINQSQIKPA 351 Query: 361 IGLTFATALRSFVRQDPDVIMVGEIRDSETAHVAVHAALTGHLVLTTLHTETAAAAVPRL 420 IGLTFATALRSFVRQDPDVIMVGEIRD+ETAHVAVHAALTGHLVLTTLHTETAAAAVPRL Sbjct: 352 IGLTFATALRSFVRQDPDVIMVGEIRDNETAHVAVHAALTGHLVLTTLHTETAAAAVPRL 411 Query: 421 LDLGVEGYLLRSVLRGVIAQRLVRQLCERCKTARPLATAXHRGSP 465 LDLGVEGYLLRS LR VIAQRLVRQLC+ CK A+PL R P Sbjct: 412 LDLGVEGYLLRSTLRAVIAQRLVRQLCDHCKIAKPLDEETCRNDP 456 >ref|YP_001208198.1| general secretion pathway protein E [Bradyrhizobium sp. ORS 278] emb|CAL79983.1| General secretion pathway protein E (Type II traffic warden ATPase) [Bradyrhizobium sp. ORS 278] Length = 550 Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust. Identities = 324/465 (69%), Positives = 365/465 (78%), Gaps = 8/465 (1%) Query: 1 MANDLSVRFVDYLRQNNHLAPVEGPADRTGQGADVRQLKLWEVTSLSPTEFADEAARFFA 60 M+ LS +F DYL Q + A G A Q+ LW+ LS FA+EAARF Sbjct: 1 MSGMLSTQFHDYLSQRHPQAADSGAAGEA-------QVALWDKFGLSAEAFAEEAARFTG 53 Query: 61 LGRLTLQEMTSAEPLVGSFSPRFLRETMVYPCRAADGTTVLAVVDPTDQATLRAAQIVLG 120 L R++L+E+ +A P FS RFLRE YP + + V AV DPTDQA RAA++VLG Sbjct: 54 LERVSLRELLAAVPATAEFSDRFLREVAGYPYQTPERVAVFAVADPTDQAVRRAAELVLG 113 Query: 121 ADIDVKVASSEDVAIALNNSSSAEEAEAADNAAALPREDDIESLRDLASGAPVVRAVNDL 180 KVAS EDVA+ L+ + L R+DD+ESLRDLASGAPVVRAVNDL Sbjct: 114 PATVFKVASYEDVAVVLDQRLGGTDDSEISPQQEL-RDDDVESLRDLASGAPVVRAVNDL 172 Query: 181 IEKAVELRASDIHIEPFSAGLMVRLRIDGLLRPVAALSGVLPQAVVSRIKIIANLNIAER 240 IEKAVE+RASDIHIEPFS GL+VRLR+DGLLRP+AA +GVLPQAV+SRIKI+A LNIAER Sbjct: 173 IEKAVEMRASDIHIEPFSTGLVVRLRVDGLLRPIAAPAGVLPQAVISRIKIVAGLNIAER 232 Query: 241 RLPQDGAARLRAGRTDIDIRVAIMPTQHGESCVIRILPKDRGLLVVEKLGFSEPDEAKLR 300 RLPQDGAAR+RAGRT+ID+RVAIMPTQ GES V+RILPKDR LV +LG S D+A LR Sbjct: 233 RLPQDGAARIRAGRTEIDVRVAIMPTQAGESAVLRILPKDRSQLVANRLGLSARDDAALR 292 Query: 301 RLLKLPHGMVVITGPTGSGKTTTLATILSILNEPSRKILTIEDPVEYELPGVNQSQIKPA 360 RL+ LPHGM+VITGPTGSGKTTTLATILS+LN P RKILT+EDPVEYE+PG+NQSQIKPA Sbjct: 293 RLITLPHGMIVITGPTGSGKTTTLATILSMLNTPERKILTVEDPVEYEIPGINQSQIKPA 352 Query: 361 IGLTFATALRSFVRQDPDVIMVGEIRDSETAHVAVHAALTGHLVLTTLHTETAAAAVPRL 420 IGLTFA+ALRSFVRQDPDVIMVGEIRDSETAHVA+HAALTGHLVLTTLHTETAAAAVPRL Sbjct: 353 IGLTFASALRSFVRQDPDVIMVGEIRDSETAHVAIHAALTGHLVLTTLHTETAAAAVPRL 412 Query: 421 LDLGVEGYLLRSVLRGVIAQRLVRQLCERCKTARPLATAXHRGSP 465 LDLGVEGYLLRS LR VIAQRLVRQLCE CKTARPL A R P Sbjct: 413 LDLGVEGYLLRSTLRAVIAQRLVRQLCEHCKTARPLDEATCRDDP 457 >ref|YP_532873.1| type II secretion system protein E [Rhodopseudomonas palustris BisB18] gb|ABD88554.1| type II secretion system protein E [Rhodopseudomonas palustris BisB18] Length = 561 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 290/422 (68%), Positives = 345/422 (81%), Gaps = 1/422 (0%) Query: 39 KLWEVTSLSPTEFADEAARFFALGRLTLQEMTSAEPLVGSFSPRFLRETMVYPCRAADGT 98 KLWE++ LS +EFAD ARF+ L R TL E+ +A+ FS RFLRE V+P ++A G Sbjct: 41 KLWEISELSASEFADAVARFYDLPRTTLPELIAAQSQAHRFSRRFLREMAVFPYQSATGE 100 Query: 99 TVLAVVDPTDQATLRAAQIVLGADIDVKVASSEDVAIALNNSSSAEEAEAADNAAALP-R 157 ++A+ DP+D A++RAA IV GA + +VAS ED+A L+ + ++ A++ + Sbjct: 101 PIVAIADPSDHASIRAAAIVFGAAVSTQVASFEDIATVLDQRLGEDHNSEDESVASISSQ 160 Query: 158 EDDIESLRDLASGAPVVRAVNDLIEKAVELRASDIHIEPFSAGLMVRLRIDGLLRPVAAL 217 +DDI++LRDLASGAPVVRAVNDL E AVELRASDIHIEP L+ R+RIDGLLR V Sbjct: 161 DDDIDNLRDLASGAPVVRAVNDLFESAVELRASDIHIEPTRTALIARMRIDGLLRTVPTP 220 Query: 218 SGVLPQAVVSRIKIIANLNIAERRLPQDGAARLRAGRTDIDIRVAIMPTQHGESCVIRIL 277 +GV PQAV+SRIKI+A LNIAERRLPQDGAAR RA R++ID+RVAIMPTQHGES VIR+L Sbjct: 221 AGVPPQAVISRIKILAGLNIAERRLPQDGAARFRAARSEIDMRVAIMPTQHGESAVIRLL 280 Query: 278 PKDRGLLVVEKLGFSEPDEAKLRRLLKLPHGMVVITGPTGSGKTTTLATILSILNEPSRK 337 P+DRGLL +EKLGF DE KLR +L LPHGM+V+TGPTGSGKTTTLAT+LS+LN+P+RK Sbjct: 281 PRDRGLLSIEKLGFLPGDEGKLRGMLTLPHGMIVVTGPTGSGKTTTLATVLSVLNQPTRK 340 Query: 338 ILTIEDPVEYELPGVNQSQIKPAIGLTFATALRSFVRQDPDVIMVGEIRDSETAHVAVHA 397 ILTIEDPVEYE+PG+ QSQ KP+IGLTFATALR+FVRQDPDVIMVGEIRD+ETAHVA+HA Sbjct: 341 ILTIEDPVEYEIPGICQSQAKPSIGLTFATALRAFVRQDPDVIMVGEIRDAETAHVAIHA 400 Query: 398 ALTGHLVLTTLHTETAAAAVPRLLDLGVEGYLLRSVLRGVIAQRLVRQLCERCKTARPLA 457 ALTGHLVLTTLHTETAAAAVPRLLDLGVE +LLRS LR VIAQRLVRQLC+RCK R L Sbjct: 401 ALTGHLVLTTLHTETAAAAVPRLLDLGVEAFLLRSTLRAVIAQRLVRQLCDRCKAGRALT 460 Query: 458 TA 459 A Sbjct: 461 EA 462 >ref|YP_002361242.1| type II secretion system protein E [Methylocella silvestris BL2] gb|ACK49880.1| type II secretion system protein E [Methylocella silvestris BL2] Length = 561 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 296/431 (68%), Positives = 349/431 (80%), Gaps = 7/431 (1%) Query: 39 KLWEVTSLSPTEFADEAARFFALGRLTLQEMTSAEPLVGSFSPRFLRETMVYPCRAADGT 98 K+WE T LS FADE A F+ + RL+L E+ +A+ L FS RFLRET ++P RA DG Sbjct: 41 KIWEATDLSANGFADEVAHFYGMRRLSLPELVAAKALTDRFSARFLRETSIFPFRAEDGG 100 Query: 99 TVLAVVDPTDQATLRAAQIVLGADIDVKVASSEDVAIALNNSSSAEEAEAAD----NAAA 154 LA DP+D+A RAA+IVLG ++V+VAS ED+AI L A+EA + D +A+A Sbjct: 101 LKLAAADPSDRAAARAAEIVLGGPVEVEVASFEDIAIILGERIGADEAASPDERRPSASA 160 Query: 155 LPREDDIESLRDLASGAPVVRAVNDLIEKAVELRASDIHIEPFSAGLMVRLRIDGLLRPV 214 +DDIESLRDLASGAPVVRAVNDL+E+AVELRASDIHIEPF GL VR+R+DGLLR V Sbjct: 161 ---DDDIESLRDLASGAPVVRAVNDLLERAVELRASDIHIEPFRNGLTVRMRVDGLLRTV 217 Query: 215 AALSGVLPQAVVSRIKIIANLNIAERRLPQDGAARLRAGRTDIDIRVAIMPTQHGESCVI 274 A + LPQA++SRIKI+A LNIAERRLPQDGAAR R R+DIDIRVA MPTQ+GES V+ Sbjct: 218 PAPADALPQALLSRIKILAGLNIAERRLPQDGAARQRIARSDIDIRVATMPTQYGESAVL 277 Query: 275 RILPKDRGLLVVEKLGFSEPDEAKLRRLLKLPHGMVVITGPTGSGKTTTLATILSILNEP 334 R+LP+DRGLL V +LG S DE L RLL+LPHG++V+TGPTGSGKTT+LAT+LS+LN+P Sbjct: 278 RLLPQDRGLLDVARLGLSAADEKILMRLLELPHGLLVVTGPTGSGKTTSLATMLSLLNQP 337 Query: 335 SRKILTIEDPVEYELPGVNQSQIKPAIGLTFATALRSFVRQDPDVIMVGEIRDSETAHVA 394 SRKILTIEDPVEYELPGVNQSQ+K IGLTFATA+R+FVRQDPDVIMVGE+RDSETA++A Sbjct: 338 SRKILTIEDPVEYELPGVNQSQVKAGIGLTFATAMRAFVRQDPDVIMVGEVRDSETANIA 397 Query: 395 VHAALTGHLVLTTLHTETAAAAVPRLLDLGVEGYLLRSVLRGVIAQRLVRQLCERCKTAR 454 VHAALTGHLVLTTLHTE+AAAA+PRLLDLGVEG+LL+S LR VIAQRLVR LCERCK R Sbjct: 398 VHAALTGHLVLTTLHTESAAAAIPRLLDLGVEGFLLKSTLRAVIAQRLVRVLCERCKKKR 457 Query: 455 PLATAXHRGSP 465 L P Sbjct: 458 ILTQEALEADP 468