BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0020.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773943.1| hypothetical protein bll7303 [Bradyrhizobium ja... 461 e-128 ref|YP_001203532.1| putative cobalamin synthesis protein cobW [B... 278 9e-73 ref|YP_001242504.1| putative cobalamin synthesis protein cobW [B... 276 3e-72 ref|ZP_05068523.1| cobalamin biosynthesis protein CobW [Octadeca... 231 8e-59 ref|YP_004866873.1| cobalamin biosynthesis protein [Gluconacetob... 213 3e-53 >ref|NP_773943.1| hypothetical protein bll7303 [Bradyrhizobium japonicum USDA 110] dbj|BAC52568.1| bll7303 [Bradyrhizobium japonicum USDA 110] Length = 309 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 239/306 (78%), Positives = 271/306 (88%) Query: 1 VPVPILLVAGFLGAGKTTVVNHLLAHAQGRRIAAVVNDFGAINIDAELIAGAGDGVVSLS 60 +PVPILLV GFLGAGKTTVVNHLLAHA+GRRIAAVVNDFGAINIDAELIAGA DGVVSL+ Sbjct: 1 MPVPILLVTGFLGAGKTTVVNHLLAHAEGRRIAAVVNDFGAINIDAELIAGASDGVVSLA 60 Query: 61 NGCICCTLEGDLLRTLATLLRRDPRPEFIVIETSGIADPADIVRNLMDPVIWKEAPLETV 120 NGCICC+LEGDLLRTL+TLLRRDP+PE+IVIETSG+ADP+DIVRNLMDPVI +EAPLETV Sbjct: 61 NGCICCSLEGDLLRTLSTLLRRDPKPEYIVIETSGVADPSDIVRNLMDPVILREAPLETV 120 Query: 121 LCVVDATQPAAMLNDALLRSQLRAADVVALSKVDLTDAAAGVAIRDAVRAVRPAAVVVDA 180 LCV+DA P + L+DAL+R+QLR AD+VALSK+DL D AG +R+A+R +R AVVVDA Sbjct: 121 LCVMDAGTPPSALDDALVRAQLRVADIVALSKLDLADEGAGARMREAIRVLRVPAVVVDA 180 Query: 181 LHGEVPAALLFPADLDHVPVPRETAPRRPASDRFETLSWTSERPVLLPRLQQAIGRLAPK 240 HGE+PAALLFPA +D P RE PRRPA +RFETLSWTS+ P+ LPRLQQAIGRLAPK Sbjct: 181 QHGEIPAALLFPATIDSAPATREPGPRRPAEERFETLSWTSDHPISLPRLQQAIGRLAPK 240 Query: 241 LARAKGLFETVEQPGRLTVFQLAGGRATLAAGGVPSPGVPRTRIVFIAEMGALSRAEIDA 300 LARAKGLFETVEQPGRLTVFQ AGGRATLA G P+PGVPR+RIVFIAE+G LS+AE+D Sbjct: 241 LARAKGLFETVEQPGRLTVFQFAGGRATLAPGEAPTPGVPRSRIVFIAELGVLSKAELDG 300 Query: 301 IMEGCV 306 I+ CV Sbjct: 301 ILAECV 306 >ref|YP_001203532.1| putative cobalamin synthesis protein cobW [Bradyrhizobium sp. ORS 278] emb|CAL75295.1| putative cobalamin synthesis protein cobW [Bradyrhizobium sp. ORS 278] Length = 309 Score = 278 bits (710), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 157/309 (50%), Positives = 208/309 (67%), Gaps = 9/309 (2%) Query: 3 VPILLVAGFLGAGKTTVVNHLLAHAQGRRIAAVVNDFGAINIDAELIAGAGDGVVSLSNG 62 VP+LLVAG LGAGKTT++NHLLA+ GRRIAAVVNDFGA++IDA+L+ + V+SL NG Sbjct: 3 VPVLLVAGALGAGKTTLLNHLLAYPDGRRIAAVVNDFGAVDIDAQLLGSVTEEVISLKNG 62 Query: 63 CICCTLEGDLLRTLATLLRRDPRPEFIVIETSGIADPADIVRNLMDPVIWKEAPLETVLC 122 CICC+L+GDLLRTL+++++RDP P+ I IETSGI+DPA+I+RNLMDPVI+K APLETV+ Sbjct: 63 CICCSLQGDLLRTLSSVIKRDPAPDAIAIETSGISDPAEIIRNLMDPVIFKVAPLETVVT 122 Query: 123 VVDATQ---PAAMLNDALLRSQLRAADVVALSKVDLTDAAAGVAIRDAVRAVRPAAVVVD 179 +VD + ++ +D L RSQLRAAD V L+K DL D AA R V V+PA+ + + Sbjct: 123 LVDPQRLRDDPSVADDVLWRSQLRAADFVLLTKSDLLDRAALDEARALVGRVKPASSIFE 182 Query: 180 ALHGEVPAALLFPADLDHVPVPRETAPRR--PASDRFETLSWTSERPVLLPRLQQAIGRL 237 G V LLF D + PR TAPR+ S+ F T++WTS+ P+ L R QQ IG+L Sbjct: 183 IARGVVAPDLLFSRD---IRAPR-TAPRQLPVMSEPFATITWTSKAPLSLDRFQQVIGKL 238 Query: 238 APKLARAKGLFETVEQPGRLTVFQLAGGRATLAAGGVPSPGVPRTRIVFIAEMGALSRAE 297 AP+ R KG+ E P + +FQ R TLA VP ++V I G L + Sbjct: 239 APRTLRIKGILLFTEHPAQPILFQSVATRGTLAPSPVPPADGLTAQLVLIGREGELDADQ 298 Query: 298 IDAIMEGCV 306 IDA++ G + Sbjct: 299 IDALLRGVI 307 >ref|YP_001242504.1| putative cobalamin synthesis protein cobW [Bradyrhizobium sp. BTAi1] gb|ABQ38598.1| putative cobalamin synthesis protein cobW [Bradyrhizobium sp. BTAi1] Length = 309 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 154/306 (50%), Positives = 202/306 (66%), Gaps = 7/306 (2%) Query: 3 VPILLVAGFLGAGKTTVVNHLLAHAQGRRIAAVVNDFGAINIDAELIAGAGDGVVSLSNG 62 VP+LLVAG LGAGKTT++NHLLA+ GRRIAAVVNDFGA++IDA+L+ + V+SL NG Sbjct: 3 VPVLLVAGALGAGKTTLLNHLLANPDGRRIAAVVNDFGAVDIDAQLLGTVTEEVISLKNG 62 Query: 63 CICCTLEGDLLRTLATLLRRDPRPEFIVIETSGIADPADIVRNLMDPVIWKEAPLETVLC 122 CICC+L+GDLLRTL+ +++RDP P+ IVIETSGI+DPA+I+RNLMDPVI+K APLETV+ Sbjct: 63 CICCSLQGDLLRTLSAVIKRDPAPDAIVIETSGISDPAEIIRNLMDPVIFKVAPLETVVT 122 Query: 123 VVDATQ---PAAMLNDALLRSQLRAADVVALSKVDLTDAAAGVAIRDAVRAVRPAAVVVD 179 +VD + + DAL RSQLRAAD L+K DL D A +R V +P + + + Sbjct: 123 LVDPQRLRDAPELEQDALWRSQLRAADFALLTKTDLLDRVALDEVRAVVGRHKPQSAIFE 182 Query: 180 ALHGEVPAALLFPADLDHVPVPRETAPRRPA-SDRFETLSWTSERPVLLPRLQQAIGRLA 238 HG VP LLF +L PR + P S+ F T++WTS P+ L R QQ IG+LA Sbjct: 183 VAHGIVPPDLLFSRELR---APRAMPRQMPVMSEPFATVTWTSRAPLSLARFQQVIGQLA 239 Query: 239 PKLARAKGLFETVEQPGRLTVFQLAGGRATLAAGGVPSPGVPRTRIVFIAEMGALSRAEI 298 + R KGL E PG+ +FQ R TLA +P ++V I G ++ +I Sbjct: 240 ARTLRIKGLLLFTEHPGKPILFQSVATRGTLAPAPLPPADGLTAQLVLIGREGEIAADQI 299 Query: 299 DAIMEG 304 DA+M G Sbjct: 300 DAVMRG 305 >ref|ZP_05068523.1| cobalamin biosynthesis protein CobW [Octadecabacter antarcticus 238] gb|EDY88060.1| cobalamin biosynthesis protein CobW [Octadecabacter antarcticus 238] Length = 304 Score = 231 bits (590), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 146/298 (48%), Positives = 188/298 (63%), Gaps = 14/298 (4%) Query: 1 VPVPILLVAGFLGAGKTTVVNHLLAHAQGRRIAAVVNDFGAINIDAELIAGAGDGVVSLS 60 + VPILL+ GFLGAGKTT++N LL GRRIAA+VNDFGAINIDA++++G+ +G++ L Sbjct: 1 MSVPILLITGFLGAGKTTLINRLLGADHGRRIAAIVNDFGAINIDADILSGSAEGIIGLK 60 Query: 61 NGCICCTLEGDLLRTLATLLRRDPRPEFIVIETSGIADPADIVRNLMDPVIWKEAPLETV 120 NGCICC+L+GDLLRT+ LL +DP PE IVIE SG+ADPA IV++LMDPVI +A L ++ Sbjct: 61 NGCICCSLQGDLLRTIKLLLTQDPVPELIVIEASGVADPAGIVQSLMDPVIGLQASLGSI 120 Query: 121 LCVVDATQPAAMLNDALLRSQLRAADVVALSKVDLTDAAAGVAIRDAVRAVRPAAVVVDA 180 +CVVDA A D L ++Q+RAAD++ LSK TD A V+++ + AV D Sbjct: 121 VCVVDAPDAATRGADPLWQAQVRAADMICLSKTGETDPDALVSLQTRL-AVEQRRYGFD- 178 Query: 181 LHGEVPAALLFPADLDHVPVPRET--APRRPASDRFETLSWTSERPVLLPRLQQAIGRLA 238 + +P A+L A PR+T AP R DRF L WT V + Q IG LA Sbjct: 179 MDAPLPLAVLLEAG-PTADRPRDTIRAPLR--DDRFVHLEWTHSGAVDMRAFQDLIGHLA 235 Query: 239 PKLARAKGLFETVEQPGRLTVFQLAGGRATLAAGGVPSPGVPRT--RIVFIAEMGALS 294 P L RAKG F T + +FQLAG RATLA P+ RT +V I E G Sbjct: 236 PDLLRAKG-FLTFQGRTGCMLFQLAGQRATLA----PAQDPHRTGCALVLIGEHGTFD 288 >ref|YP_004866873.1| cobalamin biosynthesis protein [Gluconacetobacter xylinus NBRC 3288] dbj|BAK82503.1| cobalamin biosynthesis protein [Gluconacetobacter xylinus NBRC 3288] Length = 328 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/313 (39%), Positives = 175/313 (55%), Gaps = 10/313 (3%) Query: 3 VPILLVAGFLGAGKTTVVNHLLAHAQGRRIAAVVNDFGAINIDAELIAGAGDGVVSLSNG 62 VP++++ GFLGAGKTT +N ++ R+++AVVNDFGAI+IDA+LI + V+ L NG Sbjct: 15 VPVIVIGGFLGAGKTTFINRIINSFPTRKLSAVVNDFGAIDIDADLINLGREQVIPLRNG 74 Query: 63 CICCTLEGDLLRTLATLLRRDPRPEFIVIETSGIADPADIVRNLMDPVIWKEAPLETVLC 122 CICC+L+GD+L T+ LL + RP+ I+IE SG++ D+ L+D V WKEA L++V+C Sbjct: 75 CICCSLQGDMLSTIRYLLAQPVRPDGIIIECSGVSQIGDVKTALLDAVFWKEAALDSVIC 134 Query: 123 VVDAT---QPAAMLNDALLRSQLRAADVVALSKVDLTDAAAGVAIRDAVRAV-RPAAVVV 178 V D + A +L Q R D + LSK++ +R+ V A + A V+ Sbjct: 135 VADGQDILEDPAYFAQSLRAEQFRDGDFIILSKMEQMPPEQRQTVRERVLAHGKRAEFVL 194 Query: 179 DALHGEVPAALLFPADLDHVPVPRETAPRRPASDR-----FETLSWTSERPVLLPRLQQA 233 D LLF DH R+T R ASD F +L+W S+RP+ QQ Sbjct: 195 DNTAVAQMENLLFSFSFDHTAPLRKTTGLR-ASDAAPGQPFASLAWESDRPIAFDIFQQV 253 Query: 234 IGRLAPKLARAKGLFETVEQPGRLTVFQLAGGRATLAAGGVPSPGVPRTRIVFIAEMGAL 293 IG A L RAKG+ P VFQ+ G R T+ AG P G R+RIVFI G + Sbjct: 254 IGAHASTLLRAKGILYASHAPHTPAVFQMVGNRVTMGAGHDPEMGAHRSRIVFIGYEGQI 313 Query: 294 SRAEIDAIMEGCV 306 + + A M+ CV Sbjct: 314 NLKTLRADMDRCV 326