BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0104.0014.p         (62 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001204808.1| putative tRNA/rRNA methyltransferase [Bradyr...    74   8e-12
ref|NP_772386.1| tRNA/rRNA methyltransferase [Bradyrhizobium jap...    74   9e-12
ref|YP_001241303.1| putative tRNA/rRNA methyltransferase [Bradyr...    72   3e-11
ref|YP_487336.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudo...    72   3e-11
ref|YP_004107866.1| TrmH family RNA methyltransferase [Rhodopseu...    68   4e-10

>ref|YP_001204808.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS 278]
 emb|CAL76571.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS 278]
          Length = 399

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 49/62 (79%)

Query: 1   VHRLAIELVNPNESEAIGADRAKRRAWLEARDYRVVDMQVAEVERNLDGELARLEAGLQQ 60
           +HRLAIELV  +ES+ + ADRA+R+AWLE+RDYRV +++ A+VE NL+ ELARL   + +
Sbjct: 338 IHRLAIELVGTDESKGVVADRAQRKAWLESRDYRVTEVKAADVEANLEAELARLHGMIAE 397

Query: 61  AR 62
            +
Sbjct: 398 TK 399


>ref|NP_772386.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51011.1| bll5746 [Bradyrhizobium japonicum USDA 110]
          Length = 398

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 46/60 (76%)

Query: 2   HRLAIELVNPNESEAIGADRAKRRAWLEARDYRVVDMQVAEVERNLDGELARLEAGLQQA 61
           HR+AIELVNP E E I ADRA RR WLEARDYRV++++ A+VER+L+  L  L++ + + 
Sbjct: 339 HRIAIELVNPGEGETIAADRAGRRTWLEARDYRVLEIRAADVERDLESGLTVLQSMMSKT 398


>ref|YP_001241303.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
 gb|ABQ37397.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 399

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 47/56 (83%)

Query: 1   VHRLAIELVNPNESEAIGADRAKRRAWLEARDYRVVDMQVAEVERNLDGELARLEA 56
           +HRLAIELV  +ESE + ADRA+RRAWLE+RDYRV +++ A+VE +L+ EL RL+A
Sbjct: 338 IHRLAIELVGDDESEGVVADRAQRRAWLESRDYRVTEVKGADVEGDLEAELKRLQA 393


>ref|YP_487336.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
 gb|ABD08425.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
          Length = 398

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 2   HRLAIELVNPNESEAIGADRAKRRAWLEARDYRVVDMQVAEVERNLDGELARLEA 56
           HR+AIELVNP+ES+AI  DRA R+ WLEARDYRVV ++ A VER++   L RLEA
Sbjct: 340 HRIAIELVNPDESDAIATDRAARKDWLEARDYRVVLIEAAMVERDIAEVLGRLEA 394


>ref|YP_004107866.1| TrmH family RNA methyltransferase [Rhodopseudomonas palustris DX-1]
 gb|ADU43133.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris DX-1]
          Length = 400

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 45/60 (75%)

Query: 2   HRLAIELVNPNESEAIGADRAKRRAWLEARDYRVVDMQVAEVERNLDGELARLEAGLQQA 61
           HR+AIELVNP+ES+AI  DRA R+AWLEARDYRV  +   +V  ++   LARLEA L +A
Sbjct: 341 HRIAIELVNPDESDAIVRDRAMRKAWLEARDYRVALVAATDVTGDIAAVLARLEAVLARA 400