BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0007.p (364 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002976595.1| GntR family transcriptional regulator [Rhizo... 508 e-142 ref|YP_768829.1| GntR family transcriptional regulator [Rhizobiu... 503 e-140 gb|EGE57028.1| GntR family transcriptional regulator [Rhizobium ... 502 e-140 ref|YP_003882351.1| GntR family transcriptional regulator [Dicke... 433 e-119 ref|ZP_02463048.1| transcriptional regulator, GntR family/aminot... 427 e-117 >ref|YP_002976595.1| GntR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS57056.1| transcriptional regulator, GntR family with aminotransferase domain [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 500 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 254/370 (68%), Positives = 289/370 (78%), Gaps = 21/370 (5%) Query: 6 TPMPEIPFAIAVPGGAVAPDDQWRRLGNRVRQ--------------------AIADYVRK 45 TP P +PFAIAVP +APDD WRRLGNRVR AIAD+VR+ Sbjct: 126 TPHPPVPFAIAVPACGIAPDDNWRRLGNRVRASRQAAPSGYHDPMGLLELRLAIADHVRR 185 Query: 46 SRAVHCEPEQVVITAGTQQGLYLAGRVLLSSGDRVWAEDPAYPGMTAVLDDLDLLTTRVS 105 +RAVHCEPEQV+IT+GTQQGLY+AGRVLLS D VWAEDPAYPG+TAVLDDL + R+ Sbjct: 186 ARAVHCEPEQVIITSGTQQGLYMAGRVLLSRDDAVWAEDPAYPGLTAVLDDLGVRMHRLP 245 Query: 106 VDAQGIDVEAAVAACPHARAAFVTPSHQYPLGMPMSMARRNALVAWAQRHDGWIVEDDYD 165 VDAQG++VE + CP ARAAFVTPSHQYP+GMP+SMARRN+L+AWA ++ WIVEDDYD Sbjct: 246 VDAQGMNVERGLELCPRARAAFVTPSHQYPIGMPLSMARRNSLIAWADQNRAWIVEDDYD 305 Query: 166 SELRYAGHPFPSMQGLAPSRVIYLGTLSKVLFPSLRLGYVVAPSPLIDAFAGARALLDRH 225 SELRYAGHPFPSMQGL PSRVIYLGT SKVLFPSLRLGYV+AP PL +AFAGARA+LDRH Sbjct: 306 SELRYAGHPFPSMQGLRPSRVIYLGTFSKVLFPSLRLGYVIAPPPLAEAFAGARAILDRH 365 Query: 226 SPTADQHVLAAYMREGLFEAHIRRIRGVYAARRATLIAALTRHMPGDVTLQPSDQGMHLL 285 SP A+QHVLAAYMREG FEAHIRRIRG+YA RRA L++AL R +P +Q SDQGMH+L Sbjct: 366 SPIAEQHVLAAYMREGYFEAHIRRIRGLYAERRAVLLSALDRALPEGCRVQQSDQGMHIL 425 Query: 286 LWLPERFDDVQLAKAALVAGIVVRPISPMYQAAP-RSGLMLGFGGFEPEELEAAALRLRC 344 LWLPE DD QLA AL AG+ VR ISPMY A P R GLMLGFGGF P++L+AA L Sbjct: 426 LWLPEEVDDAQLAARALSAGLAVRAISPMYAARPARPGLMLGFGGFLPDQLQAAVGELVK 485 Query: 345 VIDQHTSQRR 354 + Q SQ R Sbjct: 486 QLSQQMSQSR 495 >ref|YP_768829.1| GntR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] emb|CAK08736.1| putative GntR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 502 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 253/378 (66%), Positives = 291/378 (76%), Gaps = 22/378 (5%) Query: 6 TPMPEIPFAIAVPGGAVAPDDQWRRLGNRVRQ--------------------AIADYVRK 45 TP P +PFAIAVP +APDD WRRLGNRVR AIAD+VR+ Sbjct: 126 TPHPPVPFAIAVPACGIAPDDNWRRLGNRVRASRQAAPSGYHDPMGLLELRLAIADHVRR 185 Query: 46 SRAVHCEPEQVVITAGTQQGLYLAGRVLLSSGDRVWAEDPAYPGMTAVLDDLDLLTTRVS 105 +RAVHCEPEQV++T+GTQQGLY+AGRVLLS D VWAEDPAYPG+TAVLDDL + T R+ Sbjct: 186 ARAVHCEPEQVIVTSGTQQGLYMAGRVLLSRDDAVWAEDPAYPGLTAVLDDLGVRTHRLP 245 Query: 106 VDAQGIDVEAAVAACPHARAAFVTPSHQYPLGMPMSMARRNALVAWAQRHDGWIVEDDYD 165 VD QG++VE + CP ARAAFVTPSHQYP+GMP+SMARRN+L+ WA ++ WIVEDDYD Sbjct: 246 VDVQGMNVERGLELCPQARAAFVTPSHQYPIGMPLSMARRNSLITWADQNRAWIVEDDYD 305 Query: 166 SELRYAGHPFPSMQGLAPSRVIYLGTLSKVLFPSLRLGYVVAPSPLIDAFAGARALLDRH 225 SELRYAGHPFPSMQGL PSRVIYLGT SKVLFPSLRLGYV+AP PL +AFAGARA+LDRH Sbjct: 306 SELRYAGHPFPSMQGLRPSRVIYLGTFSKVLFPSLRLGYVIAPPPLAEAFAGARAILDRH 365 Query: 226 SPTADQHVLAAYMREGLFEAHIRRIRGVYAARRATLIAALTRHMPGDVTLQPSDQGMHLL 285 SP A+QHVLAAYMREG FEAHIRRIRG+YA RRA L+ AL R +P +Q SD GMH+L Sbjct: 366 SPIAEQHVLAAYMREGYFEAHIRRIRGLYAERRAVLLTALDRVLPEGCGVQQSDHGMHIL 425 Query: 286 LWLPERFDDVQLAKAALVAGIVVRPISPMYQAAP-RSGLMLGFGGFEPEELEAAALRLRC 344 LWLPE DDVQLA AL AG+ VR ISPMY A P R GLMLGFGGF P++L+AA L Sbjct: 426 LWLPEEVDDVQLAARALSAGLAVRAISPMYAAQPARPGLMLGFGGFLPDQLQAAVGELVK 485 Query: 345 VIDQHTSQRRAKPRRTEA 362 ++ Q Q P++ EA Sbjct: 486 LLSQQMPQ-AGGPQQAEA 502 >gb|EGE57028.1| GntR family transcriptional regulator [Rhizobium etli CNPAF512] Length = 492 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 250/369 (67%), Positives = 291/369 (78%), Gaps = 21/369 (5%) Query: 1 VAAAFTPMPEIPFAIAVPGGAVAPDDQWRRLGNRVRQ--------------------AIA 40 +A A TP P +PFAIAVP +APDD WRRLGNR+R AIA Sbjct: 121 IARALTPHPPVPFAIAVPASGIAPDDNWRRLGNRMRASRQAAPSGYQDPMGVLELRIAIA 180 Query: 41 DYVRKSRAVHCEPEQVVITAGTQQGLYLAGRVLLSSGDRVWAEDPAYPGMTAVLDDLDLL 100 +VR++RAVHCEPEQV++T+GTQQGLY+AGRVLLS D VWAEDPAYPG+TAVLDDL + Sbjct: 181 GHVRRARAVHCEPEQVIVTSGTQQGLYMAGRVLLSHDDPVWAEDPAYPGLTAVLDDLGVR 240 Query: 101 TTRVSVDAQGIDVEAAVAACPHARAAFVTPSHQYPLGMPMSMARRNALVAWAQRHDGWIV 160 T R+ VDAQG++VE + CP ARAAFVTPSHQYP+GMP+SMARRNAL+AWA ++ WIV Sbjct: 241 THRIPVDAQGMNVERGLELCPEARAAFVTPSHQYPVGMPLSMARRNALIAWADQNRAWIV 300 Query: 161 EDDYDSELRYAGHPFPSMQGLAPSRVIYLGTLSKVLFPSLRLGYVVAPSPLIDAFAGARA 220 EDDYDSELRYAGHPFPSMQGL PSRVIYLGT SKVLFPSLRLGYV+AP PL +AFAGARA Sbjct: 301 EDDYDSELRYAGHPFPSMQGLRPSRVIYLGTFSKVLFPSLRLGYVIAPEPLAEAFAGARA 360 Query: 221 LLDRHSPTADQHVLAAYMREGLFEAHIRRIRGVYAARRATLIAALTRHMPGDVTLQPSDQ 280 +LDRHSP ++QHV+AAYMREG FEAHIRRIRG+YA RRA L+AAL R +P +QPSDQ Sbjct: 361 ILDRHSPISEQHVVAAYMREGYFEAHIRRIRGLYAERRAVLLAALERVLPAGCHVQPSDQ 420 Query: 281 GMHLLLWLPERFDDVQLAKAALVAGIVVRPISPMYQAAP-RSGLMLGFGGFEPEELEAAA 339 GMH+LLWLPE DDV+LA AL AG+ VR ISPMY A R GLMLGFGGF P++L+AA Sbjct: 421 GMHILLWLPEDADDVRLAARALSAGLAVRAISPMYGAQKARPGLMLGFGGFPPDQLQAAV 480 Query: 340 LRLRCVIDQ 348 L ++ + Sbjct: 481 GELAKLLQE 489 >ref|YP_003882351.1| GntR family transcriptional regulator [Dickeya dadantii 3937] gb|ADM97794.1| Transcriptional regulator, GntR family [Dickeya dadantii 3937] Length = 503 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 224/368 (60%), Positives = 265/368 (72%), Gaps = 24/368 (6%) Query: 1 VAAAFTPMPEIPFAIAVPGGAVAPDDQWRRLGNRVRQ--------------------AIA 40 +A A +P+P +PF++AVP G APDD+WRRLGNRVR AIA Sbjct: 131 IARALSPLPAVPFSVAVPEGEAAPDDRWRRLGNRVRAGQAAALAGYSDPRGLFSLRAAIA 190 Query: 41 DYVRKSRAVHCEPEQVVITAGTQQGLYLAGRVLLSSGDRVWAEDPAYPGMTAVLDDLDLL 100 Y+R+SRA EP+ +++T GTQQGLYLA RVLLS GD WAEDPA G+TAVL + + Sbjct: 191 TYLRQSRAAIAEPDNIILTEGTQQGLYLAARVLLSPGDSAWAEDPACAGLTAVLTECGVQ 250 Query: 101 TTRVSVDAQGIDVEAAVAACPHARAAFVTPSHQYPLGMPMSMARRNALVAWAQRHDGWIV 160 T R+ VD QG+DVE A ARAAFVTPSHQYPLGMP+SM RR AL+ WA++HD WIV Sbjct: 251 TRRIPVDTQGMDVEQATRRYADARAAFVTPSHQYPLGMPLSMGRRLALLEWARQHDSWIV 310 Query: 161 EDDYDSELRYAGHPFPSMQGLAPSRVIYLGTLSKVLFPSLRLGYVVAPSPLIDAFAGARA 220 EDDYDSELRY GHPFP+MQGL P RV+YLGT SKV+ PSLRLGY+V P+ L +AFAGARA Sbjct: 311 EDDYDSELRYVGHPFPAMQGLDPGRVVYLGTFSKVMAPSLRLGYMVVPAALTEAFAGARA 370 Query: 221 LLDRHSPTADQHVLAAYMREGLFEAHIRRIRGVYAARRATLIAALTRHMPGDVTLQPSDQ 280 L+ R SP ADQHVL AYM+EG FEAHIRRIR VYA RR LI AL R P + L+P DQ Sbjct: 371 LMGRASPLADQHVLTAYMQEGYFEAHIRRIRTVYAERRHVLIEALQRETPW-LQLEPGDQ 429 Query: 281 GMHLLLWLPERFDDVQLAKAALVAGIVVRPISPMYQAAP--RSGLMLGFGGFEPEELEAA 338 GMHL+ WLP+ DV + +AA AG+ +R +SPMY A P RSGLMLGFGGF PE L A Sbjct: 430 GMHLVAWLPDGVADVAVERAAHAAGLALRALSPMY-AGPTRRSGLMLGFGGFPPEALRRA 488 Query: 339 ALRLRCVI 346 +LR V+ Sbjct: 489 VRQLRTVL 496 >ref|ZP_02463048.1| transcriptional regulator, GntR family/aminotransferase, classes I and II [Burkholderia thailandensis MSMB43] Length = 391 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 218/370 (58%), Positives = 272/370 (73%), Gaps = 24/370 (6%) Query: 1 VAAAFTPMPEIPFAIAVPGGAVAPDDQWRRLGNRVR--------------------QAIA 40 VA F P+P +PFAI+VP GA APDD WRRLGNR+R +AIA Sbjct: 6 VAREFEPLPPVPFAISVPVGATAPDDVWRRLGNRLRAKGAAAPMGYAEPQGVLPLREAIA 65 Query: 41 DYVRKSRAVHCEPEQVVITAGTQQGLYLAGRVLLSSGDRVWAEDPAYPGMTAVLDDLDL- 99 DYVRKSR+VHCEP+Q+++T+GTQQGL+LA +VLL + DR W E+PAY G+TA+L+ Sbjct: 66 DYVRKSRSVHCEPDQIIVTSGTQQGLFLACQVLLGAHDRAWVENPAYRGITAILECAGRR 125 Query: 100 -LTTRVSVDAQGIDVEAAVAACPHARAAFVTPSHQYPLGMPMSMARRNALVAWAQRHDGW 158 RV VDA+GIDV+A + ARAAFVTPSHQYPLGMPMSMARR+AL+AWA+ W Sbjct: 126 DAMVRVPVDAEGIDVDAGIRLARDARAAFVTPSHQYPLGMPMSMARRSALLAWARTDGAW 185 Query: 159 IVEDDYDSELRYAGHPFPSMQGLAPSRVIYLGTLSKVLFPSLRLGYVVAPSPLIDAFAGA 218 ++EDDYDSELR+ G+PFPS+QGL P RV+YLGT SK+LFPSLRLGY+VAP L+DAF GA Sbjct: 186 VIEDDYDSELRFGGYPFPSLQGLDPDRVVYLGTFSKILFPSLRLGYLVAPDELVDAFRGA 245 Query: 219 RALLDRHSPTADQHVLAAYMREGLFEAHIRRIRGVYAARRATLIAALTRHMPGDVT-LQP 277 R L+DRH+PTADQHVLAA++ +G F+ HIRR+RGVYA RA LI + R +P D+ LQP Sbjct: 246 RVLMDRHAPTADQHVLAAFIADGHFDRHIRRVRGVYAEHRAQLIDTVGRLLPDDLAWLQP 305 Query: 278 SDQGMHLLLWLPERFDDVQLAKAALVAGIVVRPISPMYQ-AAPRSGLMLGFGGFEPEELE 336 DQGMH +LWL DD+++ A AG+ VR +SPM+ R GL+LGFGGF E+++ Sbjct: 306 GDQGMHAVLWLAAGVDDLRVVAMAAQAGVAVRAVSPMFAPGTARPGLVLGFGGFSREQMD 365 Query: 337 AAALRLRCVI 346 AAA RL VI Sbjct: 366 AAARRLAEVI 375