BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0004.p (559 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_420291.1| methionyl-tRNA synthetase [Caulobacter crescent... 645 0.0 ref|YP_003592647.1| methionyl-tRNA synthetase [Caulobacter segni... 644 0.0 ref|YP_003855054.1| methionyl-tRNA synthetase [Parvularcula berm... 638 0.0 ref|YP_001683374.1| methionyl-tRNA synthetase [Caulobacter sp. K... 633 e-179 ref|ZP_00952135.1| methionyl-tRNA synthetase [Oceanicaulis alexa... 622 e-176 >ref|NP_420291.1| methionyl-tRNA synthetase [Caulobacter crescentus CB15] ref|YP_002516920.1| methionyl-tRNA synthetase [Caulobacter crescentus NA1000] sp|Q9A884.1|SYM_CAUCR RecName: Full=Methionyl-tRNA synthetase; AltName: Full=Methionine--tRNA ligase; Short=MetRS sp|B8H5U4.1|SYM_CAUCN RecName: Full=Methionyl-tRNA synthetase; AltName: Full=Methionine--tRNA ligase; Short=MetRS gb|AAK23459.1| methionyl-tRNA synthetase [Caulobacter crescentus CB15] gb|ACL95012.1| methionyl-tRNA synthetase [Caulobacter crescentus NA1000] Length = 569 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/567 (57%), Positives = 394/567 (69%), Gaps = 10/567 (1%) Query: 1 MTKILITSALPYVNGVKHLGNLIGSLLPADVHARFRRQIGDDVLFICATDEHGTPAELGA 60 M +ILITSALPY+NG+KHLGNL GS+LPADV+ARF+R G + L+ICATDEHGTPAEL A Sbjct: 1 MARILITSALPYINGIKHLGNLAGSMLPADVYARFKRAQGHETLYICATDEHGTPAELAA 60 Query: 61 IEAGQDVRAFCAAQHAIQADIYRRFGLSFDHFGRTSSPHNHALTQHFYRRLDDAGLIEAR 120 AGQDV +CA QH +Q ++ R FGLS+DHFGR+SSP NH LTQHF + L+D GLIE R Sbjct: 61 AAAGQDVATYCAEQHVLQHEVGRAFGLSWDHFGRSSSPQNHRLTQHFCQALEDHGLIEER 120 Query: 121 TSRQVFSPADRRFLPDRYVLGTCPHCGDAGARGDQCDHCGTLLDPPDLIDPRSALSGDRA 180 + V+S D+RFLPDRYV GTCPHC ARGDQCD+CG LLDP DLIDP S +SG R Sbjct: 121 VDQMVYSVDDKRFLPDRYVEGTCPHCKFEKARGDQCDNCGNLLDPTDLIDPYSVISGSRN 180 Query: 181 LEIRDSRHLYLRQSHLVEKIGAWIDSRTGWPPFVVSTAKGWLNAELRDRCITRDLAWGI- 239 +E+RD++HLYL Q+ + +KI AW+D+ WPP S A L+ L DR ITRDLAWGI Sbjct: 181 IEVRDTKHLYLLQTKMQDKIRAWVDAHADWPPLARSIAYKHLDEGLIDRGITRDLAWGIP 240 Query: 240 ----AVPCEGFEGKVFYVWFDAPIGYIAATQEWADAAPGRDWRQWWWQ---ADDVSYIQF 292 VP GFE KVFYVWFDAPI YIAATQEWA+ +P RDW++WW ADDV Y+QF Sbjct: 241 VAQDGVPRPGFEEKVFYVWFDAPIEYIAATQEWAEGSPDRDWKRWWRTDAGADDVRYVQF 300 Query: 293 LGKDNIPFHTVSFPATLIGSGEPWKTADVIKGFHWLNYEGGKFSTSRKRGVFTDAAIAEL 352 +GKDN+ FHTVSFPAT++GS EPWK+ D++K F+WLN+ GGKFSTS KRGVF DAA+ L Sbjct: 301 MGKDNVAFHTVSFPATILGSEEPWKSVDMLKAFNWLNWYGGKFSTSNKRGVFMDAALEIL 360 Query: 353 PADLWRWWLIANAPESADTDFGVARFVADVNKDLADIFGNLANRIISFAHRAFHGRFPEG 412 P DLWRW+L AN+PE +DT F +F + VN+DLAD+ GN NRI+ F F G P G Sbjct: 361 PPDLWRWYLTANSPEGSDTAFTWEQFASAVNRDLADVLGNFVNRILKFNESKFEGVVPAG 420 Query: 413 GVPDDAERQLAHDLEQRIAALHRHHTALEFRAAAAATRAIWDTTNAYLQHAAPWTAIKSD 472 G P E +L D+ R+A L A+E R +A A RA+W N YLQ AAPWTAIK+D Sbjct: 421 GEPGPLEEKLFADVSARLADLAEQMDAIEIRKSAQALRALWVVGNEYLQEAAPWTAIKTD 480 Query: 473 PARAAVITRTGLNLVALSATLAWSIVPHLAARVLGALGRSDTVPRWP-NGPLLPLLDRGA 531 RAAVI RT LNL AL A ++ +P A ++ A G D WP N L Sbjct: 481 RDRAAVIVRTALNLAALYAKISAPFIPFAAEKIGDAFGL-DFPASWPSNDAKAELNTLSV 539 Query: 532 GTPVARLGPLVEKITPERAGQLTARFG 558 G P+ L +KI E+ + TARFG Sbjct: 540 GRPITVPEVLFKKIEDEQIAEWTARFG 566 >ref|YP_003592647.1| methionyl-tRNA synthetase [Caulobacter segnis ATCC 21756] gb|ADG10029.1| methionyl-tRNA synthetase [Caulobacter segnis ATCC 21756] Length = 569 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/567 (57%), Positives = 394/567 (69%), Gaps = 10/567 (1%) Query: 1 MTKILITSALPYVNGVKHLGNLIGSLLPADVHARFRRQIGDDVLFICATDEHGTPAELGA 60 M +ILITSALPY+NG+KHLGNL GS+LPADV+ARF+R G + L+ICATDEHGTPAEL A Sbjct: 1 MARILITSALPYINGIKHLGNLAGSMLPADVYARFQRARGHETLYICATDEHGTPAELAA 60 Query: 61 IEAGQDVRAFCAAQHAIQADIYRRFGLSFDHFGRTSSPHNHALTQHFYRRLDDAGLIEAR 120 A QDV +CA QH +Q D+ R FGLS+DHFGR+SSP NH LTQHF + L+D GLIE R Sbjct: 61 AAANQDVATYCAEQHVLQHDVGRAFGLSWDHFGRSSSPQNHRLTQHFCQALEDHGLIEER 120 Query: 121 TSRQVFSPADRRFLPDRYVLGTCPHCGDAGARGDQCDHCGTLLDPPDLIDPRSALSGDRA 180 + V+S D+RFLPDRYV GTCPHCG ARGDQCD+CG LLDP DLIDP S +SG R Sbjct: 121 VDQMVYSVDDKRFLPDRYVEGTCPHCGFEKARGDQCDNCGNLLDPTDLIDPYSVISGSRN 180 Query: 181 LEIRDSRHLYLRQSHLVEKIGAWIDSRTGWPPFVVSTAKGWLNAELRDRCITRDLAWGIA 240 +E+RD+RHLYL Q+ + +KI AW+DS WP S A L+ L DR ITRDLAWGI Sbjct: 181 IEVRDTRHLYLLQTKMADKIRAWVDSHADWPQLARSIAYKHLDEGLIDRGITRDLAWGIP 240 Query: 241 V-----PCEGFEGKVFYVWFDAPIGYIAATQEWADAAPGRDWRQWWWQ---ADDVSYIQF 292 V P GFE KVFYVWFDAPI YIAATQEWA+A+P RDW++WW A+DV Y+QF Sbjct: 241 VAKDGAPRPGFEDKVFYVWFDAPIEYIAATQEWAEASPDRDWKRWWRTDAGAEDVRYVQF 300 Query: 293 LGKDNIPFHTVSFPATLIGSGEPWKTADVIKGFHWLNYEGGKFSTSRKRGVFTDAAIAEL 352 +GKDN+ FHTVSFPAT++GS EPWK+ D++K F+WLN+ GGKFSTS KRGVF DAA+ L Sbjct: 301 MGKDNVAFHTVSFPATILGSEEPWKSVDMLKAFNWLNWYGGKFSTSNKRGVFMDAALDIL 360 Query: 353 PADLWRWWLIANAPESADTDFGVARFVADVNKDLADIFGNLANRIISFAHRAFHGRFPEG 412 P DLWRW+L AN+PE +DT F +F + VN+DLAD+ GN NRI+ F F G PEG Sbjct: 361 PPDLWRWYLTANSPEGSDTAFTWEQFASAVNRDLADVLGNFVNRILKFTESKFDGVVPEG 420 Query: 413 GVPDDAERQLAHDLEQRIAALHRHHTALEFRAAAAATRAIWDTTNAYLQHAAPWTAIKSD 472 G P E +L D+ R+A L A+E R +A A RA+W N YLQ AAPWTAIK+D Sbjct: 421 GQPGPLEEKLFADVSARLADLAEQMDAIEIRKSAQALRALWVVGNEYLQEAAPWTAIKTD 480 Query: 473 PARAAVITRTGLNLVALSATLAWSIVPHLAARVLGALGRSDTVPRWP-NGPLLPLLDRGA 531 RAAVI RT LNL AL A ++ +P A ++ A G D WP N L Sbjct: 481 RDRAAVIVRTALNLAALYAKISAPFIPFAAEKISEAFGL-DFPAAWPSNDAAAELSKLAV 539 Query: 532 GTPVARLGPLVEKITPERAGQLTARFG 558 G + L +KI ++ + TARFG Sbjct: 540 GQAITVPEVLFKKIDDDQIAEWTARFG 566 >ref|YP_003855054.1| methionyl-tRNA synthetase [Parvularcula bermudensis HTCC2503] gb|ADM09912.1| methionyl-tRNA synthetase [Parvularcula bermudensis HTCC2503] Length = 575 Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/564 (56%), Positives = 388/564 (68%), Gaps = 9/564 (1%) Query: 1 MTKILITSALPYVNGVKHLGNLIGSLLPADVHARFRRQIGDDVLFICATDEHGTPAELGA 60 M +IL+TSALPY+NGVKHLGNL+GS+LPADV+ARF R G +V F+CATDEHGTPAEL A Sbjct: 1 MARILVTSALPYINGVKHLGNLVGSMLPADVYARFMRARGHNVAFLCATDEHGTPAELAA 60 Query: 61 IEAGQDVRAFCAAQHAIQADIYRRFGLSFDHFGRTSSPHNHALTQHFYRRLDDAGLIEAR 120 +AGQ V +CAAQH QA + FGLSFDHFGR+SSP NH LT+HF RL+ G +E R Sbjct: 61 RKAGQPVAEYCAAQHETQASLAAAFGLSFDHFGRSSSPTNHELTRHFADRLEAEGYLEER 120 Query: 121 TSRQVFSPADRRFLPDRYVLGTCPHCGDAGARGDQCDHCGTLLDPPDLIDPRSALSGDRA 180 S+QV+S AD RFLPDRYV GTCP+CG ARGDQCD+CG LLDP DLIDP SA+SG + Sbjct: 121 VSQQVYSNADARFLPDRYVEGTCPNCGFEKARGDQCDNCGKLLDPTDLIDPYSAISGSKD 180 Query: 181 LEIRDSRHLYLRQSHLVEKIGAWIDSRTGWPPFVVSTAKGWLNAELRDRCITRDLAWGIA 240 +E+RD+RHLYL QS L ++ AW+D+ WP S A W++ LRDR ITRDL WGI Sbjct: 181 VEMRDTRHLYLLQSKLEGEVRAWVDTHKDWPLLTRSIAYKWIDEGLRDRSITRDLDWGIP 240 Query: 241 VPCEGFEGKVFYVWFDAPIGYIAATQEWADAAPGRDWRQWW---WQADDVSYIQFLGKDN 297 V +GFEGKVFYVWFDAPI YIAAT+EW W WW AD+V+Y+QF+GKDN Sbjct: 241 VRRDGFEGKVFYVWFDAPIEYIAATKEWDPEG----WESWWRTDQGADEVTYVQFMGKDN 296 Query: 298 IPFHTVSFPATLIGSGEPWKTADVIKGFHWLNYEGGKFSTSRKRGVFTDAAIAELPADLW 357 + FHTV FP TLIGS EPWK D +K +WL + GGKFSTS RG+F D AI +PAD W Sbjct: 297 VAFHTVFFPCTLIGSREPWKRVDHLKSLNWLTWYGGKFSTSEGRGIFMDQAIDLMPADTW 356 Query: 358 RWWLIANAPESADTDFGVARFVADVNKDLADIFGNLANRIISFAHRAFHGRFPEGGVPDD 417 RW+L+ANAPES DT F + F VNKDLAD+ GNL NR+ F F G+ P GG P + Sbjct: 357 RWYLMANAPESDDTAFTLQSFAGAVNKDLADVLGNLVNRVTRFTASKFEGQVPPGGEPGE 416 Query: 418 AERQLAHDLEQRIAALHRHHTALEFRAAAAATRAIWDTTNAYLQHAAPWTAIKSDPARAA 477 AE+ L +++ R AAL A+EFR A AA R +W N YLQ APWTA K+DP AA Sbjct: 417 AEQTLYREVDDRCAALTGALEAMEFRKAFAALRGLWAAGNEYLQVTAPWTAFKTDPDAAA 476 Query: 478 VITRTGLNLVALSATLAWSIVPHLAARVLGALGRS-DTVPRWPNGPLLPLLDR-GAGTPV 535 V RT LNL+ L A ++ ++P A ++LG GR + P WP GP LL R GTPV Sbjct: 477 VSVRTALNLIMLIAEVSAPVIPETADKILGIFGRQGEEPPAWPTGPAAQLLTRVQPGTPV 536 Query: 536 ARLGPLVEKITPERAGQLTARFGA 559 L +KI E+ + RFGA Sbjct: 537 PAPEVLFKKIEDEQLAEWAVRFGA 560 >ref|YP_001683374.1| methionyl-tRNA synthetase [Caulobacter sp. K31] sp|B0T3J0.1|SYM_CAUSK RecName: Full=Methionyl-tRNA synthetase; AltName: Full=Methionine--tRNA ligase; Short=MetRS gb|ABZ70876.1| methionyl-tRNA synthetase [Caulobacter sp. K31] Length = 569 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 327/573 (57%), Positives = 392/573 (68%), Gaps = 22/573 (3%) Query: 1 MTKILITSALPYVNGVKHLGNLIGSLLPADVHARFRRQIGDDVLFICATDEHGTPAELGA 60 M +ILITSALPY+NGVKHLGNL GS+LPADV+ARF+R G+D L+ICATDEHGTPAEL A Sbjct: 1 MARILITSALPYINGVKHLGNLAGSMLPADVYARFQRARGNDTLYICATDEHGTPAELAA 60 Query: 61 IEAGQDVRAFCAAQHAIQADIYRRFGLSFDHFGRTSSPHNHALTQHFYRRLDDAGLIEAR 120 AGQDV +CA QH +Q D+ R FGLS+DHFGR+SSP NH LTQHF L++ GLIE R Sbjct: 61 AAAGQDVAEYCAEQHVLQHDVGRAFGLSWDHFGRSSSPQNHRLTQHFCEVLEERGLIEER 120 Query: 121 TSRQVFSPADRRFLPDRYVLGTCPHCGDAGARGDQCDHCGTLLDPPDLIDPRSALSGDRA 180 + V+S D RFLPDRY+ GTCPHCG ARGDQCD+CG LLDP +L DP S +SG R Sbjct: 121 VDQMVYSIDDARFLPDRYIEGTCPHCGFDKARGDQCDNCGNLLDPTELKDPYSVISGSRN 180 Query: 181 LEIRDSRHLYLRQSHLVEKIGAWIDSRTGWPPFVVSTAKGWLNAELRDRCITRDLAWGIA 240 LE+RD+RHLYL Q+ + +KI AWIDS W S A L+ L DR ITRDLAWGI Sbjct: 181 LEVRDTRHLYLLQTKMADKIRAWIDSHPDWQLLAKSIAYKHLDEGLIDRGITRDLAWGIP 240 Query: 241 V-----PCEGFEGKVFYVWFDAPIGYIAATQEWADAAPGRDWRQWWWQ---ADDVSYIQF 292 V P GFE KVFYVWFDAPI YIAATQEWAD GRDW+ WW ADDV Y+QF Sbjct: 241 VTKGEFPRPGFEDKVFYVWFDAPIEYIAATQEWADEGAGRDWKSWWRTDEGADDVRYVQF 300 Query: 293 LGKDNIPFHTVSFPATLIGSGEPWKTADVIKGFHWLNYEGGKFSTSRKRGVFTDAAIAEL 352 +GKDN+ FHTVSFPAT++GS EPWK+ D++K F+WLN+ GGKFSTS KRGVF DAA+ L Sbjct: 301 MGKDNVAFHTVSFPATILGSQEPWKSVDMLKAFNWLNWYGGKFSTSNKRGVFMDAALEIL 360 Query: 353 PADLWRWWLIANAPESADTDFGVARFVADVNKDLADIFGNLANRIISFAHRAFHGRFPEG 412 P D WRW+L +NAPES+DT F +F + VN+DLAD+ GN NRI+ F F G P+G Sbjct: 361 PPDFWRWYLTSNAPESSDTAFTWEQFASAVNRDLADVLGNFVNRILKFTEGKFDGVIPDG 420 Query: 413 GVPDDAERQLAHDLEQRIAALHRHHTALEFRAAAAATRAIWDTTNAYLQHAAPWTAIKSD 472 G P E +L D+ R+A L A+E R +A A RA+W N YLQ AAPWTAIK+D Sbjct: 421 GAPGPLEEKLYADVSARLADLTEQMDAVEVRKSAQALRALWVVGNEYLQEAAPWTAIKTD 480 Query: 473 PARAAVITRTGLNLVALSATLAWSIVPHLAARVLGALGRSDTVPRWPNGPLLPLLDRGA- 531 RAAVI RT LNL AL A ++ +P A ++ G + +P WP P+ P D A Sbjct: 481 RDRAAVIVRTALNLAALYARISAPFIPFAAEKI----GEAFQLP-WP--PVWPTTDAAAE 533 Query: 532 ------GTPVARLGPLVEKITPERAGQLTARFG 558 G V L +KI E+ + T RFG Sbjct: 534 LSSLPVGLSVRAPEVLFKKIEDEQIAEWTRRFG 566 >ref|ZP_00952135.1| methionyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633] gb|EAP91288.1| methionyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633] Length = 568 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 317/569 (55%), Positives = 387/569 (68%), Gaps = 15/569 (2%) Query: 1 MTKILITSALPYVNGVKHLGNLIGSLLPADVHARFRRQIGDDVLFICATDEHGTPAELGA 60 M +ILITSALPY+NGVKHLGNL GS+LPADV+ARF R G DVL ICATDEHGTPAEL A Sbjct: 1 MARILITSALPYINGVKHLGNLAGSMLPADVYARFMRLQGHDVLAICATDEHGTPAELAA 60 Query: 61 IEAGQDVRAFCAAQHAIQADIYRRFGLSFDHFGRTSSPHNHALTQHFYRRLDDAGLIEAR 120 AGQDVRA+C QH IQ I +FGLS+D+FGRTSSP N LTQHF L+ GLI Sbjct: 61 AAAGQDVRAYCDEQHEIQKSIGEQFGLSWDYFGRTSSPQNAELTQHFAETLEKNGLIAEV 120 Query: 121 TSRQVFSPADRRFLPDRYVLGTCPHCGDAGARGDQCDHCGTLLDPPDLIDPRSALSGDRA 180 +QV+S D RFLPDRYV GTCP+CG ARGDQCD+CG LLDP +LI+P SA+SG + Sbjct: 121 VEQQVYSIDDGRFLPDRYVEGTCPNCGFEKARGDQCDNCGKLLDPIELIEPYSAVSGSKN 180 Query: 181 LEIRDSRHLYLRQSHLVEKIGAWIDSRTGWPPFVVSTAKGWLNAELRDRCITRDLAWGIA 240 LE+RD++HL L+Q+ + E+I AW+D+ GWP F S A WL+ LRDR ITRDL WG+ Sbjct: 181 LEVRDTKHLQLKQTVMEERIRAWVDAADGWPSFAKSIAYKWLDEGLRDRTITRDLKWGVP 240 Query: 241 V-----PCEGFEGKVFYVWFDAPIGYIAATQEWADAAPGRDWRQWWWQ---ADDVSYIQF 292 V P EGFE KVFYVWFDAPIGYI+AT+EWA+ G DW WW ADDV Y++F Sbjct: 241 VTKNGQPREGFEDKVFYVWFDAPIGYISATREWAEQNGG-DWESWWRTDKGADDVRYVEF 299 Query: 293 LGKDNIPFHTVSFPATLIGSGEPWKTADVIKGFHWLNYEGGKFSTSRKRGVFTDAAIAEL 352 +GKDN+ FHTVSFPATL+GS EPWKT D +K F+WL + GGKFSTS KRGVF D A+ L Sbjct: 300 MGKDNVAFHTVSFPATLLGSEEPWKTVDALKAFNWLTWYGGKFSTSNKRGVFMDQALELL 359 Query: 353 PADLWRWWLIANAPESADTDFGVARFVADVNKDLADIFGNLANRIISFAHRAFHGRFPEG 412 PAD WRW+L A PE +D F F + VNKDLAD+ GN NRI+ F F G PEG Sbjct: 360 PADYWRWYLTAYGPEGSDAQFTWDHFQSSVNKDLADVLGNFVNRILKFGASRFEGVIPEG 419 Query: 413 GVPDDAERQLAHDLEQRIAALHRHHTALEFRAAAAATRAIWDTTNAYLQHAAPWTAIKSD 472 G P +AE L ++ R+A + H+ A+EFR AAA TRA+W N YL A PW K+D Sbjct: 420 GTPGEAEAWLETEVATRLANIASHYEAMEFRKAAAETRALWAAGNEYLTRAEPWVHFKTD 479 Query: 473 PARAAVITRTGLNLVALSATLAWSIVPHLAARVLGALGRSDTVPRWPNG---PLLPLLDR 529 +AA+ R G+NLV L A +A ++P A ++L ALG + WP G +L L+ Sbjct: 480 KDQAALGVRMGINLVRLCAIVAQPVIPQAAGKILAALGL-EGAQDWPTGDAKAMLSALEP 538 Query: 530 GAGTPVARLGPLVEKITPERAGQLTARFG 558 G A + L KI ++ + + RFG Sbjct: 539 GRSFEPADI--LFAKIEDDQVAEWSERFG 565