BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0002.p (405 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_530679.1| diguanylate cyclase/phosphodiesterase [Rhodopse... 724 0.0 ref|YP_779607.1| PAS/PAC sensor-containing diguanylate cyclase/p... 719 0.0 ref|YP_004107438.1| PAS/PAC sensor -containing diguanylate cycla... 716 0.0 ref|NP_768142.1| hypothetical protein bll1502 [Bradyrhizobium ja... 711 0.0 ref|YP_001203251.1| diguanylate cyclase/phosphodiesterase [Brady... 710 0.0 >ref|YP_530679.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] gb|ABD86360.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisB18] Length = 958 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/400 (92%), Positives = 384/400 (96%) Query: 1 LRLIRCLALLALGLMMFAAAPAAYAIDAVSVRSDAPAIDLTAVLDHQRSETDRIQVSTAP 60 +RLIRCLAL ALG MM AA A A+DAVSVR DAPAIDLTAVLDHQRSE DRIQVSTAP Sbjct: 1 MRLIRCLALAALGFMMIAAGSPANALDAVSVRGDAPAIDLTAVLDHQRSEGDRIQVSTAP 60 Query: 61 GTDGIVRRIEVRAREGGQNWVVFALANNTDDQLDRLIVAPHYRIVSSGLLWPDLGLSRIA 120 GTDGIVRRIEVRAREGGQNWVVFALANNTDDQLDRLIVAPHYRIVSSGL WPDLGLSRIA Sbjct: 61 GTDGIVRRIEVRAREGGQNWVVFALANNTDDQLDRLIVAPHYRIVSSGLFWPDLGLSRIA 120 Query: 121 TITPSVGDRPERQESPTADVFRITLDPGAVVTYVAELRTDKLPQLYLWEPDAYKDKVNSF 180 T+TPS GDRPERQ+SPTADVFR+TLDPGAV+T+VAELRTDKLPQLYLWEP+AYKDKVNSF Sbjct: 121 TVTPSTGDRPERQDSPTADVFRVTLDPGAVITFVAELRTDKLPQLYLWEPEAYKDKVNSF 180 Query: 181 TLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMSNN 240 TLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMS+ Sbjct: 181 TLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMSSG 240 Query: 241 AERVWRAAGEAILAATLLVFLFAYLNLSRWHVRYSHITIGWLVFLGSLVALALFDPAVAS 300 AERVWRA+GEAILAATLLVFLFAYLNLSRWHVRYSHIT+GWL FLGSLVALALFDPAVAS Sbjct: 241 AERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDPAVAS 300 Query: 301 GIARMSLVMIAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVAAGMTVAGSVTNDIVG 360 GIARMSLV+IAFAGFALI+YLSTHGFDRAVLLIPTWFLLVVWV+AAGM VAGSVTNDIVG Sbjct: 301 GIARMSLVLIAFAGFALILYLSTHGFDRAVLLIPTWFLLVVWVIAAGMAVAGSVTNDIVG 360 Query: 361 PALLGGLVLIVMLIGFTVMQHAFAGGGATTGVVSDVERRA 400 PALLGGLVLIVMLIGFTVMQHAFAGG A TGVVSD+ERRA Sbjct: 361 PALLGGLVLIVMLIGFTVMQHAFAGGSAPTGVVSDIERRA 400 >ref|YP_779607.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] gb|ABJ04627.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] Length = 958 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/400 (94%), Positives = 390/400 (97%) Query: 1 LRLIRCLALLALGLMMFAAAPAAYAIDAVSVRSDAPAIDLTAVLDHQRSETDRIQVSTAP 60 +RLIRCLALLALGLMM AA A+A+DAVSVRSDAPAIDLTAVLDHQRSE DRIQVSTAP Sbjct: 1 MRLIRCLALLALGLMMVAAGSPAWAVDAVSVRSDAPAIDLTAVLDHQRSEADRIQVSTAP 60 Query: 61 GTDGIVRRIEVRAREGGQNWVVFALANNTDDQLDRLIVAPHYRIVSSGLLWPDLGLSRIA 120 GTDGIVRR+EVRAREGGQNWVVFALANNTDDQLDRLIVAPHYRIVSSGL WPDLGLSRIA Sbjct: 61 GTDGIVRRVEVRAREGGQNWVVFALANNTDDQLDRLIVAPHYRIVSSGLFWPDLGLSRIA 120 Query: 121 TITPSVGDRPERQESPTADVFRITLDPGAVVTYVAELRTDKLPQLYLWEPDAYKDKVNSF 180 T+TPS GDRPERQESPTAD+FR+TLDPGAV+T+VAELRTDKLPQLYLWEPDAYKDKVNSF Sbjct: 121 TLTPSTGDRPERQESPTADIFRVTLDPGAVITFVAELRTDKLPQLYLWEPDAYKDKVNSF 180 Query: 181 TLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMSNN 240 TLYQGIVIGISGLLALVLTILFVVKGS+MFPAAAALAWAVLVYIGVDFGFWGKVLDMS+ Sbjct: 181 TLYQGIVIGISGLLALVLTILFVVKGSVMFPAAAALAWAVLVYIGVDFGFWGKVLDMSSG 240 Query: 241 AERVWRAAGEAILAATLLVFLFAYLNLSRWHVRYSHITIGWLVFLGSLVALALFDPAVAS 300 AERVWRAAGEAILAATLLVFLFAYLNLSRWHVRYSHIT+GWL FLGSLVALALFDPAVAS Sbjct: 241 AERVWRAAGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDPAVAS 300 Query: 301 GIARMSLVMIAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVAAGMTVAGSVTNDIVG 360 GIARMSLV+IAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVAAGMTVAGSVTNDIVG Sbjct: 301 GIARMSLVLIAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVAAGMTVAGSVTNDIVG 360 Query: 361 PALLGGLVLIVMLIGFTVMQHAFAGGGATTGVVSDVERRA 400 PALLGGLVLIVMLIGFTVMQHAFAGGGA TGVVSDVERRA Sbjct: 361 PALLGGLVLIVMLIGFTVMQHAFAGGGAPTGVVSDVERRA 400 >ref|YP_004107438.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] gb|ADU42705.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Rhodopseudomonas palustris DX-1] Length = 959 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/400 (90%), Positives = 385/400 (96%) Query: 1 LRLIRCLALLALGLMMFAAAPAAYAIDAVSVRSDAPAIDLTAVLDHQRSETDRIQVSTAP 60 +RLIRCLALLALG+MM AAAP A+A+DAVSVRSDAPAIDLT VL+H S+ DRIQ+STAP Sbjct: 1 MRLIRCLALLALGVMMIAAAPQAHALDAVSVRSDAPAIDLTGVLEHLHSDNDRIQISTAP 60 Query: 61 GTDGIVRRIEVRAREGGQNWVVFALANNTDDQLDRLIVAPHYRIVSSGLLWPDLGLSRIA 120 G DGIVRR+EVRAREGGQNWVVFALANNTDDQLDRLIVAPHYR+V SGLLWPDLG+SRIA Sbjct: 61 GNDGIVRRVEVRAREGGQNWVVFALANNTDDQLDRLIVAPHYRMVGSGLLWPDLGMSRIA 120 Query: 121 TITPSVGDRPERQESPTADVFRITLDPGAVVTYVAELRTDKLPQLYLWEPDAYKDKVNSF 180 TITPS GDR ERQESPTAD FRITLDPG+V+T+VAELRTDKLPQLYLWEP+AYKDKVNSF Sbjct: 121 TITPSTGDRSERQESPTADTFRITLDPGSVITFVAELRTDKLPQLYLWEPEAYKDKVNSF 180 Query: 181 TLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMSNN 240 TLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIG+DFGFWGKVLDMS+ Sbjct: 181 TLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGIDFGFWGKVLDMSSG 240 Query: 241 AERVWRAAGEAILAATLLVFLFAYLNLSRWHVRYSHITIGWLVFLGSLVALALFDPAVAS 300 AERVWRA+GEAILAATLLVFLFAYLNLSRWHVRYSHIT+GWL FLGSLVALALFDPAVAS Sbjct: 241 AERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDPAVAS 300 Query: 301 GIARMSLVMIAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVAAGMTVAGSVTNDIVG 360 GIAR+SLV+IAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVA+GM VAG+VTNDIVG Sbjct: 301 GIARISLVLIAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVASGMAVAGAVTNDIVG 360 Query: 361 PALLGGLVLIVMLIGFTVMQHAFAGGGATTGVVSDVERRA 400 PALLGGLVLIVMLIGFTVMQHAF+GGGAT GV+SDVERRA Sbjct: 361 PALLGGLVLIVMLIGFTVMQHAFSGGGATGGVISDVERRA 400 >ref|NP_768142.1| hypothetical protein bll1502 [Bradyrhizobium japonicum USDA 110] dbj|BAC46767.1| bll1502 [Bradyrhizobium japonicum USDA 110] Length = 944 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/386 (94%), Positives = 376/386 (97%) Query: 15 MMFAAAPAAYAIDAVSVRSDAPAIDLTAVLDHQRSETDRIQVSTAPGTDGIVRRIEVRAR 74 M+ AA A A+DAVSVR DAPAIDLT VL+HQRS+ DRIQVSTAPGTDGIVRRIEVRAR Sbjct: 1 MILVAALPARALDAVSVRGDAPAIDLTGVLEHQRSDADRIQVSTAPGTDGIVRRIEVRAR 60 Query: 75 EGGQNWVVFALANNTDDQLDRLIVAPHYRIVSSGLLWPDLGLSRIATITPSVGDRPERQE 134 EGGQNWVVFALANNTDDQLDRLIVAPHYRIVSSGLLWPDLGLSRIATITPS GDRPERQE Sbjct: 61 EGGQNWVVFALANNTDDQLDRLIVAPHYRIVSSGLLWPDLGLSRIATITPSTGDRPERQE 120 Query: 135 SPTADVFRITLDPGAVVTYVAELRTDKLPQLYLWEPDAYKDKVNSFTLYQGIVIGISGLL 194 SPTADVFR+TLDPGAV+T+VAELRTDKLPQLYLWEP+AYKDKVNSFTLYQGIVIGISGLL Sbjct: 121 SPTADVFRVTLDPGAVITFVAELRTDKLPQLYLWEPEAYKDKVNSFTLYQGIVIGISGLL 180 Query: 195 ALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMSNNAERVWRAAGEAILA 254 ALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMSNNAER+WRAAGEAILA Sbjct: 181 ALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMSNNAERIWRAAGEAILA 240 Query: 255 ATLLVFLFAYLNLSRWHVRYSHITIGWLVFLGSLVALALFDPAVASGIARMSLVMIAFAG 314 ATLLVFLFAYLNLSRWHVRYSHIT+GWL FLGSLVALALFDPAVASGIAR+SLV+IAFAG Sbjct: 241 ATLLVFLFAYLNLSRWHVRYSHITVGWLAFLGSLVALALFDPAVASGIARISLVLIAFAG 300 Query: 315 FALIVYLSTHGFDRAVLLIPTWFLLVVWVVAAGMTVAGSVTNDIVGPALLGGLVLIVMLI 374 FALIVYLSTHGFDRAVLLIPTWFLLVVWVVAAGMTVAGSVTNDIVGPALLGGLVLIVMLI Sbjct: 301 FALIVYLSTHGFDRAVLLIPTWFLLVVWVVAAGMTVAGSVTNDIVGPALLGGLVLIVMLI 360 Query: 375 GFTVMQHAFAGGGATTGVVSDVERRA 400 GFTVMQHAFAGGGATTGVVSD+ERRA Sbjct: 361 GFTVMQHAFAGGGATTGVVSDIERRA 386 >ref|YP_001203251.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. ORS 278] emb|CAL75014.1| Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain [Bradyrhizobium sp. ORS 278] Length = 968 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/401 (90%), Positives = 383/401 (95%), Gaps = 1/401 (0%) Query: 1 LRLIRCLA-LLALGLMMFAAAPAAYAIDAVSVRSDAPAIDLTAVLDHQRSETDRIQVSTA 59 LRL+RCLA L+ALGL+M A A A+DAVSVRSDAPAIDLT +LDHQRSE DRIQVSTA Sbjct: 10 LRLVRCLASLVALGLVMCGAVAPAQAVDAVSVRSDAPAIDLTGILDHQRSENDRIQVSTA 69 Query: 60 PGTDGIVRRIEVRAREGGQNWVVFALANNTDDQLDRLIVAPHYRIVSSGLLWPDLGLSRI 119 PGTDGIVRRIEVRAREGGQNW+VFALANNTDDQLDRLIVAPHYR+V SG+LWPDLGLSRI Sbjct: 70 PGTDGIVRRIEVRAREGGQNWIVFALANNTDDQLDRLIVAPHYRVVGSGVLWPDLGLSRI 129 Query: 120 ATITPSVGDRPERQESPTADVFRITLDPGAVVTYVAELRTDKLPQLYLWEPDAYKDKVNS 179 ATITPS+GD PERQESPTADVFR+TLDPG+VVT+VAELRTDKLPQLYLWEP+AYKDKVNS Sbjct: 130 ATITPSIGDLPERQESPTADVFRVTLDPGSVVTFVAELRTDKLPQLYLWEPEAYKDKVNS 189 Query: 180 FTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMSN 239 FTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMSN Sbjct: 190 FTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMSN 249 Query: 240 NAERVWRAAGEAILAATLLVFLFAYLNLSRWHVRYSHITIGWLVFLGSLVALALFDPAVA 299 NAERVWRA+GEAILAATLLVFLFAYLNLSRWHVRYSHIT+GWL FLGSLVA+ALFDPAVA Sbjct: 250 NAERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLFFLGSLVAVALFDPAVA 309 Query: 300 SGIARMSLVMIAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVAAGMTVAGSVTNDIV 359 SGIAR+SL++IA GFALIVYLS+HGFDRAVLLIPTWFLL VWV AA MTVAG VTNDIV Sbjct: 310 SGIARISLLLIAVVGFALIVYLSSHGFDRAVLLIPTWFLLTVWVGAASMTVAGQVTNDIV 369 Query: 360 GPALLGGLVLIVMLIGFTVMQHAFAGGGATTGVVSDVERRA 400 GPALLGGLVLIVMLIGFTVMQHAFAGGGATTG+VSDVERRA Sbjct: 370 GPALLGGLVLIVMLIGFTVMQHAFAGGGATTGIVSDVERRA 410