BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0104.0001.p (539 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768142.1| hypothetical protein bll1502 [Bradyrhizobium ja... 1034 0.0 ref|YP_571465.1| GGDEF domain-containing protein [Rhodopseudomon... 1025 0.0 ref|YP_530679.1| diguanylate cyclase/phosphodiesterase [Rhodopse... 1025 0.0 ref|YP_488089.1| diguanylate cyclase/phosphodiesterase [Rhodopse... 1022 0.0 ref|YP_001203251.1| diguanylate cyclase/phosphodiesterase [Brady... 1016 0.0 >ref|NP_768142.1| hypothetical protein bll1502 [Bradyrhizobium japonicum USDA 110] dbj|BAC46767.1| bll1502 [Bradyrhizobium japonicum USDA 110] Length = 944 Score = 1034 bits (2673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/539 (93%), Positives = 527/539 (97%) Query: 1 VFTSPETEALLGLKRGTLEGPAAKWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLRT 60 VFTSPETEALLGLKRGTLEGPAA WLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLRT Sbjct: 406 VFTSPETEALLGLKRGTLEGPAASWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLRT 465 Query: 61 PDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTEFKNSEERMLHDSVHDNLTGLPNRRLF 120 PDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTE +N+EER+LHDSVHDNLTGLPNR+LF Sbjct: 466 PDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTELRNAEERLLHDSVHDNLTGLPNRKLF 525 Query: 121 MDRLGAVANLAKTMPNLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQD 180 MDRLGAVA+ AKTMP LRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQD Sbjct: 526 MDRLGAVAHFAKTMPTLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQD 585 Query: 181 TLARMAGDQFGLILLSEQDPARITNFAETIRKTIRAPIAFNDREIFLTASIGLALSDPAA 240 TLAR+AGDQFGLILLSEQDPARIT FAETIRKTIRAPIAFN+REIFLTASIGLALSDP Sbjct: 586 TLARLAGDQFGLILLSEQDPARITAFAETIRKTIRAPIAFNEREIFLTASIGLALSDPQT 645 Query: 241 PLTDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKTDRLTLESDLRRAIERQEITILYQ 300 LTDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKTDRLTLES+LRRAIERQE+TILYQ Sbjct: 646 QLTDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKTDRLTLESELRRAIERQELTILYQ 705 Query: 301 PIVRLEDRAIAGFEALARWDHPKLGRMSPSEFINVAEETGLIVDLGMFVMDQTARQLAVW 360 PIVRLEDR++AGFEALARWDHPKLGRM+PSEFI +AEETGLIVDLGMFV+DQTA+QL++W Sbjct: 706 PIVRLEDRSVAGFEALARWDHPKLGRMAPSEFITIAEETGLIVDLGMFVLDQTAKQLSIW 765 Query: 361 QRAMRSREPIFASVNVSSRQLLRHDLIHDIRTVLSRSSVARGTLKLELTESLVMENPEHA 420 QRAMRSREPIFASVNVSSRQLLRHDLIHDIRTVLSRSSVARGTLKLELTESLVMENPEHA Sbjct: 766 QRAMRSREPIFASVNVSSRQLLRHDLIHDIRTVLSRSSVARGTLKLELTESLVMENPEHA 825 Query: 421 AQMLARIRELGTGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSII 480 AQML RIRELGTGLSLDDFGTGHSSL+YLQRFPFDTIKIDQSFVRTT+RGTRPVILKSII Sbjct: 826 AQMLTRIRELGTGLSLDDFGTGHSSLAYLQRFPFDTIKIDQSFVRTTNRGTRPVILKSII 885 Query: 481 ALAHDLGMEVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAATRLLTEERLEAAS 539 ALAHDLGM+VVAEGAETDSDAVELYQ+GCEYAQGFAFGEPMDADAA RLLTE RLEAAS Sbjct: 886 ALAHDLGMDVVAEGAETDSDAVELYQMGCEYAQGFAFGEPMDADAAMRLLTEVRLEAAS 944 >ref|YP_571465.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gb|ABE41564.1| GGDEF domain [Rhodopseudomonas palustris BisB5] Length = 958 Score = 1025 bits (2651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/539 (92%), Positives = 524/539 (97%) Query: 1 VFTSPETEALLGLKRGTLEGPAAKWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLRT 60 VFTSPETEALLGLKRG LEG AA WLEVLHPLDQDRFRAALDSVLDQRRGRL Q FRLRT Sbjct: 420 VFTSPETEALLGLKRGALEGSAATWLEVLHPLDQDRFRAALDSVLDQRRGRLTQHFRLRT 479 Query: 61 PDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTEFKNSEERMLHDSVHDNLTGLPNRRLF 120 PDGHFMWFALKARPVVG+DGEV+RVVGTLTDVTE KN+EERMLHD+VHDNLTGLPNR+LF Sbjct: 480 PDGHFMWFALKARPVVGADGEVTRVVGTLTDVTEAKNAEERMLHDAVHDNLTGLPNRKLF 539 Query: 121 MDRLGAVANLAKTMPNLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQD 180 MDRLGAVAN AKTMPNLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQD Sbjct: 540 MDRLGAVANFAKTMPNLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQD 599 Query: 181 TLARMAGDQFGLILLSEQDPARITNFAETIRKTIRAPIAFNDREIFLTASIGLALSDPAA 240 TLAR+AGDQFGLILLSEQDPA+IT FAETIRKTI+APIAFNDREIFLTASIGLALSDP Sbjct: 600 TLARIAGDQFGLILLSEQDPAKITAFAETIRKTIKAPIAFNDREIFLTASIGLALSDPQT 659 Query: 241 PLTDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKTDRLTLESDLRRAIERQEITILYQ 300 L+DEIIKDAELAMYHSKRIGGDRIDVYKPAMRARK+DRLTLES+LRRAIERQEITILYQ Sbjct: 660 QLSDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKSDRLTLESELRRAIERQEITILYQ 719 Query: 301 PIVRLEDRAIAGFEALARWDHPKLGRMSPSEFINVAEETGLIVDLGMFVMDQTARQLAVW 360 PIVRLEDR++AGFEALARWDHPKLGRM+P EFI++AEE GLIV+LGMFVMDQTA+QLA+W Sbjct: 720 PIVRLEDRSVAGFEALARWDHPKLGRMAPGEFISIAEEIGLIVELGMFVMDQTAKQLAIW 779 Query: 361 QRAMRSREPIFASVNVSSRQLLRHDLIHDIRTVLSRSSVARGTLKLELTESLVMENPEHA 420 QRAMRSREPIFASVN+SSRQLLRHDLIHD+RTVLSRSS+ARGTLKLELTESLVMENPEHA Sbjct: 780 QRAMRSREPIFASVNISSRQLLRHDLIHDVRTVLSRSSIARGTLKLELTESLVMENPEHA 839 Query: 421 AQMLARIRELGTGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSII 480 AQML RIRELGTGLSLDDFGTGHSSL+YLQRFPFDTIKIDQSFVRTTSRGTRPVILKSII Sbjct: 840 AQMLTRIRELGTGLSLDDFGTGHSSLAYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSII 899 Query: 481 ALAHDLGMEVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAATRLLTEERLEAAS 539 ALAHDLGM+VVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAA RLLTEERLEAAS Sbjct: 900 ALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAAMRLLTEERLEAAS 958 >ref|YP_530679.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] gb|ABD86360.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisB18] Length = 958 Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/539 (93%), Positives = 521/539 (96%) Query: 1 VFTSPETEALLGLKRGTLEGPAAKWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLRT 60 VFTSPETE LLGLKRGTLEG AAKWLEVLHPLDQDRFRAALDSVLDQRRGRL QDFRLRT Sbjct: 420 VFTSPETETLLGLKRGTLEGSAAKWLEVLHPLDQDRFRAALDSVLDQRRGRLTQDFRLRT 479 Query: 61 PDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTEFKNSEERMLHDSVHDNLTGLPNRRLF 120 PDG FMWFALKARPVVGSDGEVSRVVGTLTDVTE KN+EERMLHDSVHDNLTGLPNR+LF Sbjct: 480 PDGRFMWFALKARPVVGSDGEVSRVVGTLTDVTEIKNAEERMLHDSVHDNLTGLPNRKLF 539 Query: 121 MDRLGAVANLAKTMPNLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQD 180 +DRL AVAN AK MPNLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQD Sbjct: 540 IDRLNAVANFAKAMPNLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQD 599 Query: 181 TLARMAGDQFGLILLSEQDPARITNFAETIRKTIRAPIAFNDREIFLTASIGLALSDPAA 240 TLAR+AGDQFGLIL+SEQDPA+IT FAETIRKTIRAPIAFNDREIFLTASIGLALSDP Sbjct: 600 TLARLAGDQFGLILMSEQDPAKITAFAETIRKTIRAPIAFNDREIFLTASIGLALSDPQT 659 Query: 241 PLTDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKTDRLTLESDLRRAIERQEITILYQ 300 LTDEIIKDAELAMYHSKRIGGDRIDVYKP MRARKTDRLTLES+LRRAIERQEITILYQ Sbjct: 660 QLTDEIIKDAELAMYHSKRIGGDRIDVYKPVMRARKTDRLTLESELRRAIERQEITILYQ 719 Query: 301 PIVRLEDRAIAGFEALARWDHPKLGRMSPSEFINVAEETGLIVDLGMFVMDQTARQLAVW 360 PIVRLEDR+IAGFEALARWDHPKLGRMSPSEFI++AEE GLIVDLGMFVMDQTA+QLA+W Sbjct: 720 PIVRLEDRSIAGFEALARWDHPKLGRMSPSEFISIAEEIGLIVDLGMFVMDQTAKQLAIW 779 Query: 361 QRAMRSREPIFASVNVSSRQLLRHDLIHDIRTVLSRSSVARGTLKLELTESLVMENPEHA 420 QRAMRSREPIFASVNVSSRQLLRHDL+HDIRTVLSRS+VARGTLKLELTESLVMENPEHA Sbjct: 780 QRAMRSREPIFASVNVSSRQLLRHDLLHDIRTVLSRSTVARGTLKLELTESLVMENPEHA 839 Query: 421 AQMLARIRELGTGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSII 480 AQML RIRELGTGLSLDDFGTGHSSL+YLQRFPFDTIKIDQSFVRTTSRGTRPVILKSII Sbjct: 840 AQMLHRIRELGTGLSLDDFGTGHSSLAYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSII 899 Query: 481 ALAHDLGMEVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAATRLLTEERLEAAS 539 ALAHDLGM+VVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAA +LLTEERL AS Sbjct: 900 ALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAAMKLLTEERLAEAS 958 >ref|YP_488089.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] gb|ABD09178.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] Length = 958 Score = 1022 bits (2643), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/539 (92%), Positives = 523/539 (97%) Query: 1 VFTSPETEALLGLKRGTLEGPAAKWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLRT 60 VFTSPETEALLGLKRG LEG AA WLEVLHPLDQDRFRAALDSVLDQRRGRL Q FRLRT Sbjct: 420 VFTSPETEALLGLKRGALEGSAASWLEVLHPLDQDRFRAALDSVLDQRRGRLTQHFRLRT 479 Query: 61 PDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTEFKNSEERMLHDSVHDNLTGLPNRRLF 120 PDGHFMWFALKARPVVG+DGEV+RVVGTLTDVTE KN+EERMLHDSVHDNLTGLPNR+LF Sbjct: 480 PDGHFMWFALKARPVVGADGEVTRVVGTLTDVTEAKNAEERMLHDSVHDNLTGLPNRKLF 539 Query: 121 MDRLGAVANLAKTMPNLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQD 180 MDRLGAVAN AKTMP LRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQD Sbjct: 540 MDRLGAVANFAKTMPTLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQD 599 Query: 181 TLARMAGDQFGLILLSEQDPARITNFAETIRKTIRAPIAFNDREIFLTASIGLALSDPAA 240 TLAR+AGDQFGLILLSEQDPA+IT FAETIRKTI+APIAFNDREIFLTASIGLALSDP Sbjct: 600 TLARIAGDQFGLILLSEQDPAKITAFAETIRKTIKAPIAFNDREIFLTASIGLALSDPQT 659 Query: 241 PLTDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKTDRLTLESDLRRAIERQEITILYQ 300 L+DEIIKDAELAMYHSKRIGGDRIDVYKPAMRARK+DRLTLES+LRRAIERQEITILYQ Sbjct: 660 QLSDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKSDRLTLESELRRAIERQEITILYQ 719 Query: 301 PIVRLEDRAIAGFEALARWDHPKLGRMSPSEFINVAEETGLIVDLGMFVMDQTARQLAVW 360 PIVRLEDR++AGFEALARWDHPKLGRM+PSEFI +AEE GLIV+LG+FVMDQTA+QLA+W Sbjct: 720 PIVRLEDRSVAGFEALARWDHPKLGRMAPSEFIAIAEEIGLIVELGLFVMDQTAKQLAIW 779 Query: 361 QRAMRSREPIFASVNVSSRQLLRHDLIHDIRTVLSRSSVARGTLKLELTESLVMENPEHA 420 QRAMR+REPIFASVNVSSRQLLRHDL+HDIRTVLSRSS+ARGTLKLELTESLVMENPEHA Sbjct: 780 QRAMRAREPIFASVNVSSRQLLRHDLLHDIRTVLSRSSIARGTLKLELTESLVMENPEHA 839 Query: 421 AQMLARIRELGTGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSII 480 AQML RIRELGTGLSLDDFGTGHSSL+YLQRFPFDTIKIDQSFVRTTSRGTRPVILKSII Sbjct: 840 AQMLTRIRELGTGLSLDDFGTGHSSLAYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSII 899 Query: 481 ALAHDLGMEVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAATRLLTEERLEAAS 539 ALAHDLGM+VVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAA RLLTEERLEAAS Sbjct: 900 ALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAAMRLLTEERLEAAS 958 >ref|YP_001203251.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. ORS 278] emb|CAL75014.1| Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain [Bradyrhizobium sp. ORS 278] Length = 968 Score = 1016 bits (2626), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/539 (92%), Positives = 523/539 (97%) Query: 1 VFTSPETEALLGLKRGTLEGPAAKWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLRT 60 VFTSPETE+LLGLKRGTLEGPAAKWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLRT Sbjct: 430 VFTSPETESLLGLKRGTLEGPAAKWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLRT 489 Query: 61 PDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTEFKNSEERMLHDSVHDNLTGLPNRRLF 120 PDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTEFKN+EER+LHDSVHDNLTGLPNR+LF Sbjct: 490 PDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTEFKNAEERLLHDSVHDNLTGLPNRKLF 549 Query: 121 MDRLGAVANLAKTMPNLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQD 180 +DRL AVAN AKTMP LRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRL+RILKP D Sbjct: 550 IDRLAAVANFAKTMPALRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLSRILKPHD 609 Query: 181 TLARMAGDQFGLILLSEQDPARITNFAETIRKTIRAPIAFNDREIFLTASIGLALSDPAA 240 TLAR+AGDQFGLILLSEQDPARIT FAETIRKTIRAPIAFN+REIFLTASIGLALSDP Sbjct: 610 TLARLAGDQFGLILLSEQDPARITAFAETIRKTIRAPIAFNEREIFLTASIGLALSDPQT 669 Query: 241 PLTDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKTDRLTLESDLRRAIERQEITILYQ 300 L+++IIKDAELAMYHSKRIGGDRIDVYKPAMRARK DRLTLES+LRR+IERQEITILYQ Sbjct: 670 QLSEDIIKDAELAMYHSKRIGGDRIDVYKPAMRARKNDRLTLESELRRSIERQEITILYQ 729 Query: 301 PIVRLEDRAIAGFEALARWDHPKLGRMSPSEFINVAEETGLIVDLGMFVMDQTARQLAVW 360 PIVRLEDR+IAGFEALARWDHPKLGRMSPSEFI +AEE GLIVDLG FV+DQTARQL+VW Sbjct: 730 PIVRLEDRSIAGFEALARWDHPKLGRMSPSEFITIAEEIGLIVDLGTFVLDQTARQLSVW 789 Query: 361 QRAMRSREPIFASVNVSSRQLLRHDLIHDIRTVLSRSSVARGTLKLELTESLVMENPEHA 420 QRA R REPIFASVNVSSRQLLRHDLIHDIR+VL+RSSVARG+LK+ELTESLVMENPEHA Sbjct: 790 QRATRLREPIFASVNVSSRQLLRHDLIHDIRSVLARSSVARGSLKIELTESLVMENPEHA 849 Query: 421 AQMLARIRELGTGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSII 480 AQMLARIRELG GLS+DDFGTGHSSL+YLQRFPFDT+KIDQSFVRTT+RGTRPVILKSII Sbjct: 850 AQMLARIRELGVGLSIDDFGTGHSSLAYLQRFPFDTLKIDQSFVRTTARGTRPVILKSII 909 Query: 481 ALAHDLGMEVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAATRLLTEERLEAAS 539 ALAHDLGM+VVAEGAETDSDAVELYQLGCEYAQG+AFGEPMDADAA RLLTEERLEAAS Sbjct: 910 ALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGYAFGEPMDADAAMRLLTEERLEAAS 968