BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0103.0019.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAQ57558.1| NrdA protein [Bradyrhizobium elkanii]                 291   2e-77
ref|NP_766647.1| ribonucleotide-diphosphate reductase subunit al...   267   3e-70
ref|YP_426532.1| ribonucleotide-diphosphate reductase subunit al...   213   7e-54
ref|YP_004086136.1| ribonucleoside-diphosphate reductase subunit...   207   5e-52
ref|ZP_08778233.1| ribonucleotide-diphosphate reductase subunit ...   200   5e-50

>emb|CAQ57558.1| NrdA protein [Bradyrhizobium elkanii]
          Length = 645

 Score =  291 bits (745), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/142 (95%), Positives = 140/142 (98%)

Query: 1   VRNPHLAKVLAAKGADTSATWESIIAHDGSVAHLDVLSEHEKAIFRTAFEIDQRWIVELA 60
           VRNPHLAK+LAAKGADTSATW+SIIAH+GSVAHLD LSEHEKA+FRTAFEIDQRWIVELA
Sbjct: 504 VRNPHLAKLLAAKGADTSATWQSIIAHEGSVAHLDTLSEHEKAVFRTAFEIDQRWIVELA 563

Query: 61  ADRAALICQSQSINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRAAFAGNIAD 120
           ADRAA ICQSQSINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRAAFAGNIAD
Sbjct: 564 ADRAAFICQSQSINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRAAFAGNIAD 623

Query: 121 GDNAAPPQPQRHTDYEECLACQ 142
           GDNAAPPQPQRHTDYEECLACQ
Sbjct: 624 GDNAAPPQPQRHTDYEECLACQ 645


>ref|NP_766647.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium
           japonicum USDA 110]
 dbj|BAC45272.1| bll0007 [Bradyrhizobium japonicum USDA 110]
          Length = 723

 Score =  267 bits (683), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 133/143 (93%), Positives = 133/143 (93%), Gaps = 2/143 (1%)

Query: 1   VRNPHLAKVLAAKGADTSATWESIIAHDGSVAHLDVLSEHEKAIFRTAFEIDQRWIVELA 60
           VRNPHLAKVLAAKGADTSATWESIIAHDGSVAHLDVLSEHEKAIFRTAFEIDQRWIVELA
Sbjct: 582 VRNPHLAKVLAAKGADTSATWESIIAHDGSVAHLDVLSEHEKAIFRTAFEIDQRWIVELA 641

Query: 61  ADRAALICQSQSINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRAAFAGNIAD 120
           ADRAALICQSQSINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRAAFAG IA 
Sbjct: 642 ADRAALICQSQSINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRAAFAGKIA- 700

Query: 121 GDNAAPPQPQRH-TDYEECLACQ 142
           GD     QP R  TDYEECLACQ
Sbjct: 701 GDATPTQQPARQRTDYEECLACQ 723


>ref|YP_426532.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           rubrum ATCC 11170]
 gb|ABC22245.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC
           11170]
 gb|AEO47962.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           rubrum F11]
          Length = 629

 Score =  213 bits (542), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 100/143 (69%), Positives = 117/143 (81%), Gaps = 5/143 (3%)

Query: 1   VRNPHLAKVLAAKGADTSATWESIIAHDGSVAHLDVLSEHEKAIFRTAFEIDQRWIVELA 60
           VRNPHLA+ LA KG DT+ TW+SII H+GSV HL+ LS+ EK +FRTAFEIDQRWI++LA
Sbjct: 491 VRNPHLARRLADKGLDTAETWQSIIEHEGSVQHLEGLSDDEKLVFRTAFEIDQRWIIDLA 550

Query: 61  ADRAALICQSQSINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRAAFAG-NIA 119
           ADRA  ICQSQSINLYLPAD DKWDLHMLHWTAW+RG+KSLYYCRSKS+ RAAF G    
Sbjct: 551 ADRAPFICQSQSINLYLPADADKWDLHMLHWTAWRRGLKSLYYCRSKSVQRAAFVGREKP 610

Query: 120 DGDNAAPPQPQRHTDYEECLACQ 142
            G+ ++ P+     DY+ECLACQ
Sbjct: 611 SGETSSAPR----ADYDECLACQ 629


>ref|YP_004086136.1| ribonucleoside-diphosphate reductase subunit alpha [Asticcacaulis
           excentricus CB 48]
 gb|ADU11985.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis
           excentricus CB 48]
          Length = 625

 Score =  207 bits (526), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 99/143 (69%), Positives = 115/143 (80%), Gaps = 3/143 (2%)

Query: 1   VRNPHLAKVLAAKGADTSATWESIIAHDGSVAHLDVLSEHEKAIFRTAFEIDQRWIVELA 60
           V+NP L  +LA KG DT  TW+SI+ H+GSV H+D LSE EKAIF+TAFEIDQRW+VELA
Sbjct: 485 VKNPFLRALLAEKGIDTPETWDSIVEHEGSVQHIDALSEDEKAIFKTAFEIDQRWVVELA 544

Query: 61  ADRAALICQSQSINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRAAFAGNIAD 120
           ADRA  ICQSQS+N++LP DVDKWDLHMLHWTAW++GVKSLYY RSKS+ RAAFAG  ++
Sbjct: 545 ADRAPEICQSQSLNIFLPGDVDKWDLHMLHWTAWEQGVKSLYYLRSKSVQRAAFAG--SE 602

Query: 121 GDNAAPPQ-PQRHTDYEECLACQ 142
           G  AA        TDYEECLACQ
Sbjct: 603 GKAAAVSMAASGKTDYEECLACQ 625


>ref|ZP_08778233.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Odyssella thessalonicensis L13]
          Length = 315

 Score =  200 bits (509), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 114/142 (80%), Gaps = 4/142 (2%)

Query: 1   VRNPHLAKVLAAKGADTSATWESIIAHDGSVAHLDVLSEHEKAIFRTAFEIDQRWIVELA 60
           V+N +L K+L  KG +T  TW+SII H+GSV HL+ LSE EK+IF+TAFEIDQRW++E A
Sbjct: 178 VKNKYLEKLLEKKGLNTDTTWQSIIEHEGSVQHLNGLSEEEKSIFKTAFEIDQRWLIEFA 237

Query: 61  ADRAALICQSQSINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRAAFAGNIAD 120
           ++RA+ ICQ QS+NL+LP+D++KWDL MLHWTAW++GVKSLYYCRSKS+ RA FAG+   
Sbjct: 238 SNRASYICQGQSLNLFLPSDINKWDLLMLHWTAWQKGVKSLYYCRSKSVQRAEFAGS--- 294

Query: 121 GDNAAPPQPQRHTDYEECLACQ 142
                PP  Q+ T+YEECL+CQ
Sbjct: 295 -KKKQPPLSQQTTNYEECLSCQ 315