BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0103.0018.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAQ57557.1| NrdB protein [Bradyrhizobium elkanii] 478 e-133 ref|NP_766646.1| ribonucleotide-diphosphate reductase subunit be... 455 e-126 ref|YP_426533.1| ribonucleotide-diphosphate reductase subunit be... 388 e-106 ref|ZP_08778234.1| ribonucleotide-diphosphate reductase subunit ... 379 e-103 ref|YP_002129187.1| ribonucleoside-diphosphate reductase, beta s... 318 5e-85 >emb|CAQ57557.1| NrdB protein [Bradyrhizobium elkanii] Length = 360 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/228 (100%), Positives = 228/228 (100%) Query: 1 MSVIDLSSVDPRTLIGKRCVGLLDSTGSYDVDRYAWAYEFWKRQQQTHWMGEEVPLGADL 60 MSVIDLSSVDPRTLIGKRCVGLLDSTGSYDVDRYAWAYEFWKRQQQTHWMGEEVPLGADL Sbjct: 4 MSVIDLSSVDPRTLIGKRCVGLLDSTGSYDVDRYAWAYEFWKRQQQTHWMGEEVPLGADL 63 Query: 61 KDWASDRVTDSERALLTQIFRFFTQSDIEVGDNYLKRYIPIFQPLTVQMMMAAFTNMETV 120 KDWASDRVTDSERALLTQIFRFFTQSDIEVGDNYLKRYIPIFQPLTVQMMMAAFTNMETV Sbjct: 64 KDWASDRVTDSERALLTQIFRFFTQSDIEVGDNYLKRYIPIFQPLTVQMMMAAFTNMETV 123 Query: 121 HIDAYALLLKTLGMPKTEFEAFRGYSEMRAKADYMHEFGVDTVADVARTLAMFGAFTEGM 180 HIDAYALLLKTLGMPKTEFEAFRGYSEMRAKADYMHEFGVDTVADVARTLAMFGAFTEGM Sbjct: 124 HIDAYALLLKTLGMPKTEFEAFRGYSEMRAKADYMHEFGVDTVADVARTLAMFGAFTEGM 183 Query: 181 ALFASFAMLLNFPRHNKMNGMGQIVSWSVRDESLHCEGIIKLFHEWNR 228 ALFASFAMLLNFPRHNKMNGMGQIVSWSVRDESLHCEGIIKLFHEWNR Sbjct: 184 ALFASFAMLLNFPRHNKMNGMGQIVSWSVRDESLHCEGIIKLFHEWNR 231 >ref|NP_766646.1| ribonucleotide-diphosphate reductase subunit beta [Bradyrhizobium japonicum USDA 110] dbj|BAC45271.1| ribonucleoside-diphosphate reductase beta subunit [Bradyrhizobium japonicum USDA 110] Length = 360 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/228 (95%), Positives = 221/228 (96%) Query: 1 MSVIDLSSVDPRTLIGKRCVGLLDSTGSYDVDRYAWAYEFWKRQQQTHWMGEEVPLGADL 60 MSVIDLS DPRTLIGK VGLLDSTGSYDVDRYAWAYEFWKRQQQTHWMGEEVPLGADL Sbjct: 4 MSVIDLSRADPRTLIGKGRVGLLDSTGSYDVDRYAWAYEFWKRQQQTHWMGEEVPLGADL 63 Query: 61 KDWASDRVTDSERALLTQIFRFFTQSDIEVGDNYLKRYIPIFQPLTVQMMMAAFTNMETV 120 DWAS RVTDSERALLTQIFRFFTQSDIEVGDNY KRYIPIFQPLTVQMMMAAFTNMETV Sbjct: 64 NDWASGRVTDSERALLTQIFRFFTQSDIEVGDNYFKRYIPIFQPLTVQMMMAAFTNMETV 123 Query: 121 HIDAYALLLKTLGMPKTEFEAFRGYSEMRAKADYMHEFGVDTVADVARTLAMFGAFTEGM 180 HIDAYALLLKTLGMPKTEFEAFRGY++MRAKADYMHEFGVD+VADVARTLAMFGAFTEGM Sbjct: 124 HIDAYALLLKTLGMPKTEFEAFRGYAQMRAKADYMHEFGVDSVADVARTLAMFGAFTEGM 183 Query: 181 ALFASFAMLLNFPRHNKMNGMGQIVSWSVRDESLHCEGIIKLFHEWNR 228 ALFASFAMLLNFPRHNKMNGMGQIVSWSVRDESLHCEGIIKLFHEW+R Sbjct: 184 ALFASFAMLLNFPRHNKMNGMGQIVSWSVRDESLHCEGIIKLFHEWHR 231 >ref|YP_426533.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum rubrum ATCC 11170] gb|ABC22246.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC 11170] gb|AEO47963.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum rubrum F11] Length = 358 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 176/223 (78%), Positives = 199/223 (89%) Query: 6 LSSVDPRTLIGKRCVGLLDSTGSYDVDRYAWAYEFWKRQQQTHWMGEEVPLGADLKDWAS 65 ++ ++P L+ +GLL +G+Y+V+RY WAYEFWK+QQQ HWMGEEVPLG DLKDWAS Sbjct: 3 IAQLNPLDLVNSGRIGLLQGSGAYNVERYPWAYEFWKKQQQVHWMGEEVPLGEDLKDWAS 62 Query: 66 DRVTDSERALLTQIFRFFTQSDIEVGDNYLKRYIPIFQPLTVQMMMAAFTNMETVHIDAY 125 DRV+D ER LLTQIFRFFTQSD+EV DNYLKRY+PIFQPL +QMMMAAFTNMET+HIDAY Sbjct: 63 DRVSDQERNLLTQIFRFFTQSDVEVSDNYLKRYMPIFQPLEIQMMMAAFTNMETIHIDAY 122 Query: 126 ALLLKTLGMPKTEFEAFRGYSEMRAKADYMHEFGVDTVADVARTLAMFGAFTEGMALFAS 185 ALLL TLGMP+TEF AFR Y+ MR KADYMH FGV T+ADV+RTLAMFGAFTEGMALFAS Sbjct: 123 ALLLTTLGMPRTEFSAFRDYAAMRDKADYMHTFGVGTMADVSRTLAMFGAFTEGMALFAS 182 Query: 186 FAMLLNFPRHNKMNGMGQIVSWSVRDESLHCEGIIKLFHEWNR 228 FAMLLNFPRHNKM GMGQIV+WSVRDESLHC+GII+LFHEWNR Sbjct: 183 FAMLLNFPRHNKMKGMGQIVTWSVRDESLHCQGIIRLFHEWNR 225 >ref|ZP_08778234.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Odyssella thessalonicensis L13] Length = 362 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 174/224 (77%), Positives = 194/224 (86%) Query: 5 DLSSVDPRTLIGKRCVGLLDSTGSYDVDRYAWAYEFWKRQQQTHWMGEEVPLGADLKDWA 64 + S DP LI +GLL+S+G+YD+DRYAWAY+ WK+QQQ HW+GEE+PLG DLKDWA Sbjct: 4 NYSDQDPINLINTGQIGLLESSGTYDIDRYAWAYQAWKKQQQVHWIGEEIPLGEDLKDWA 63 Query: 65 SDRVTDSERALLTQIFRFFTQSDIEVGDNYLKRYIPIFQPLTVQMMMAAFTNMETVHIDA 124 SDR+T+ ER LLTQIFRFFTQSDIEV DNY KRYIPIFQPL VQMMMAAFTNMETVHIDA Sbjct: 64 SDRLTEEERHLLTQIFRFFTQSDIEVSDNYFKRYIPIFQPLEVQMMMAAFTNMETVHIDA 123 Query: 125 YALLLKTLGMPKTEFEAFRGYSEMRAKADYMHEFGVDTVADVARTLAMFGAFTEGMALFA 184 YALLLKTLGMPKTEF AF+ Y+ M AKADYMH FG T ADV RTLAMFGAFTEG++LFA Sbjct: 124 YALLLKTLGMPKTEFSAFKDYTAMTAKADYMHTFGTRTCADVTRTLAMFGAFTEGLSLFA 183 Query: 185 SFAMLLNFPRHNKMNGMGQIVSWSVRDESLHCEGIIKLFHEWNR 228 SFAML+NFPR NKM GMGQIVSWSVRDESLHCE II+L+HEW + Sbjct: 184 SFAMLMNFPRFNKMKGMGQIVSWSVRDESLHCESIIRLYHEWTK 227 >ref|YP_002129187.1| ribonucleoside-diphosphate reductase, beta subunit [Phenylobacterium zucineum HLK1] gb|ACG76758.1| ribonucleoside-diphosphate reductase, beta subunit [Phenylobacterium zucineum HLK1] Length = 350 Score = 318 bits (814), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 147/212 (69%), Positives = 172/212 (81%), Gaps = 1/212 (0%) Query: 17 KRCVGLLDSTGSYDVDRYAWAYEFWKRQQQTHWMGEEVPLGADLKDWASDRVTDSERALL 76 K GLL + +Y RY WAY++WK+QQQ HWM EE+PLG DLKDWAS ++ D ER LL Sbjct: 10 KALPGLLTPSFAYKPFRYPWAYDYWKKQQQVHWMPEEIPLGEDLKDWAS-KLNDRERNLL 68 Query: 77 TQIFRFFTQSDIEVGDNYLKRYIPIFQPLTVQMMMAAFTNMETVHIDAYALLLKTLGMPK 136 TQIFRFFTQSD+EV DNY++RY +F+P V+MM+AAF+NMET+HI AYALLL+T+GMP Sbjct: 69 TQIFRFFTQSDVEVNDNYMERYARVFKPTEVKMMLAAFSNMETIHIAAYALLLETIGMPD 128 Query: 137 TEFEAFRGYSEMRAKADYMHEFGVDTVADVARTLAMFGAFTEGMALFASFAMLLNFPRHN 196 EF AF Y MR K DYM FGVDT AD+ RTLAMFG FTEG+ LFASFAML+NFPRHN Sbjct: 129 AEFTAFLDYQAMRDKHDYMQSFGVDTHADICRTLAMFGGFTEGLQLFASFAMLMNFPRHN 188 Query: 197 KMNGMGQIVSWSVRDESLHCEGIIKLFHEWNR 228 KM GMGQIVSWSVRDESLHCEGIIKL+H +N+ Sbjct: 189 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFNK 220